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Analysis of water and molecules bound to a prototypical GPCR

Research Project

Project/Area Number 19370071
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionGakushuin University

Principal Investigator

TETSUJI Okada  Gakushuin University, 理学部, 教授 (10271545)

Research Collaborator ODA Shunichiro  学習院大学, 理学部, 科研費技術員
RILEY Charles K.  学習院大学, 理学部, 科研費技術員
Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥13,520,000 (Direct Cost: ¥10,400,000、Indirect Cost: ¥3,120,000)
Fiscal Year 2009: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2008: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2007: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Keywords生物物理 / シグナル伝達 / 膜タンパク質 / 結晶構造 / 活性制御 / 膜蛋白質
Research Abstract

Activity of a G protein-coupled receptor (GPCR) is evoked upon agonist binding via yet unknown dynamics of the protein moiety. We have crystallized prototypical GPCR rhodopsin, in the presence of some retinal derivatives that would bind to the surface of the protein and affect the activity. The binding of β-ionone, which is a truncated form of retinal and is supposed to have some allosteric effect, has been detected by X-ray diffraction analysis to 2.6 angstroms resolution. This is the first example demonstrating that the hydrophobic surface of a GPCR could be occupied by a specifically bound small molecule.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (18 results)

All 2010 2009 2008 2007

All Journal Article (11 results) (of which Peer Reviewed: 4 results) Presentation (7 results)

  • [Journal Article] Do vertebrate rhodopsins contain an allosteric binding site(s) for retinoids?2010

    • Author(s)
      T. Isayama, S. Miyazono, T. Okada, M. Kono, R.K. Crouch, A.L. Zimmerman, C.L. Makino
    • Journal Title

      FASEB JOURNAL 24

    • Related Report
      2009 Final Research Report
  • [Journal Article] ロドプシンの構造・機能における特殊性と一般性川元-2010

    • Author(s)
      尾崎洋子、岡田哲二
    • Journal Title

      医学のあゆみ 233

      Pages: 662-667

    • Related Report
      2009 Final Research Report
  • [Journal Article] Do vertebrate rhodopsins contain an allosteric binding site(s)for retinoids?2010

    • Author(s)
      T.Isayama
    • Journal Title

      FASEB Journal (In press)

    • Related Report
      2009 Annual Research Report
  • [Journal Article] ロドプシンの構造・機能における特殊性と一般性2010

    • Author(s)
      川元-尾崎洋子
    • Journal Title

      医学のあゆみ (印刷中)

    • Related Report
      2009 Annual Research Report
  • [Journal Article] An Additional Retinoid Binding Site in Rhodopsin2009

    • Author(s)
      T. Isayama, T. Okada, J.D. Looney, R.K. Crouch, A.L. Zimmerman, C.L.
    • Journal Title

      Makino Biophys. J. 96(3)

    • Related Report
      2009 Final Research Report
  • [Journal Article] An Additional Retinoid Binding Site in Rhodopsin2009

    • Author(s)
      Isayama T
    • Journal Title

      Biophysical Journal 96(3), Suppl. 1

    • Related Report
      2008 Annual Research Report
  • [Journal Article] ロドプシンおよび関連受容体結晶解析の進展2008

    • Author(s)
      岡田哲二
    • Journal Title

      日本結晶学会誌 50(6)

      Pages: 359-364

    • NAID

      10023987885

    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Journal Article] X-ray crystallographic analysis of 9-cis-rhodopsin, a model analogue visual pigment Nakamichi H2007

    • Author(s)
      Okada T
    • Journal Title

      Photochem Photobiol 83

      Pages: 232-235

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by X-ray crystallography.2007

    • Author(s)
      Nakamichi H, Buss V, Okada T.
    • Journal Title

      Biophys J 92

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by x-ray crystallography2007

    • Author(s)
      Nakamichi H
    • Journal Title

      Biophysical Journal 92

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] X-ray crystallographic analysis of 9-cis-rhodopsin, a model analogue visual pigment2007

    • Author(s)
      Nakamichi H
    • Journal Title

      Photochemistry and Photobiology 83

      Pages: 232-235

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] ロドプシン結晶構造解析の最近の進展2008

    • Author(s)
      岡田哲二
    • Organizer
      GPCR研究会
    • Place of Presentation
      東京
    • Year and Date
      2008-05-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] ウシロドプシンの結晶構造と光反応2008

    • Author(s)
      岡田哲二
    • Organizer
      蛋白質研究所セミナー 生物における光情報変換の一般性と多様性
    • Place of Presentation
      大阪
    • Year and Date
      2008-04-18
    • Related Report
      2008 Annual Research Report
  • [Presentation] SPring-8 GPCR symposium2008

    • Author(s)
      Harima
    • Organizer
      Structure and function of bovine rhodopsin
    • Place of Presentation
      Tetsuji Okada
    • Year and Date
      2008-02-26
    • Related Report
      2009 Final Research Report
  • [Presentation] Structure and function of bovine rhodopsin2008

    • Author(s)
      Okada T
    • Organizer
      SPring-8 GPCR symposium
    • Place of Presentation
      Harima, Japan
    • Year and Date
      2008-02-26
    • Related Report
      2007 Annual Research Report
  • [Presentation] ロドプシン結晶構造解析の最近の進展2008

    • Author(s)
      岡田哲二
    • Organizer
      第5回gpcr研究会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] ウシロドプシンの結晶構造と光反応2008

    • Author(s)
      岡田哲二
    • Organizer
      蛋白質研究所セミナー生物における光情報変換の一般性と多様性
    • Place of Presentation
      大阪
    • Related Report
      2009 Final Research Report
  • [Presentation] Structures of the chromophore in rhodopsin and bathorhodopsin2007

    • Author(s)
      Sugihara M, Okada T, Entel P, Buss V
    • Organizer
      International symposium on retinal proteins: experiments and theory
    • Place of Presentation
      Germany
    • Year and Date
      2007-09-24
    • Related Report
      2009 Final Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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