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Structural analysis of SecA-SecYE complex from Thermus thermophilus

Research Project

Project/Area Number 19370085
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Cell biology
Research InstitutionKyoto University

Principal Investigator

MORI Hiroyuki  Kyoto University, ウイルス研究所, 准教授 (10243271)

Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥13,650,000 (Direct Cost: ¥10,500,000、Indirect Cost: ¥3,150,000)
Fiscal Year 2009: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2008: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2007: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Keywords生体膜 / SecA / SecYEG / トランスロコン / タンパク質膜透過膜 / ATPase / X線結晶構造解析 / バクテリア / 化学架橋 / SecYE / Fabフラグメント / タンパク質膜透過 / 膜タンパク質 / 膜タンパク質複合体 / モノクローナル抗体 / タンパク質膜透過装置 / Translocon / SecY / E / 好熱菌
Research Abstract

Evolutionarily conserved membrane protein complex, the Sec translocon, functions as a protein-conducting channel to facilitate secretory protein export and membrane protein integration. In this project, we determined the first atomic resolution crystal structure of the SecYE translocon from a SecA (bacterial translocation motor)-containing organism, Thermus thermophilus, in complex with an anti-SecY Fab fragment. The structure has revealed a significant conformational change from the previously determined archaeal SecYEβ structure, in that several SecY transmembrane helices are shifted to create a hydrophobic crevasse open to the cytoplasm. Disulfide mapping indicate that this "pre-open" state of the bacterial SecYE complex was induced by the Fab fragment and SecA, which in common bind to SecY residues at the tip of the cytoplasmic domain. Our disulfide crosslinking experiments revealed that some of these SecY residues contact specific residues of SecA that are otherwise buried and unavailable in the isolated SecA molecule. These results suggest that the motor components of the Sec machinery undergo cooperative conformational changes upon their interaction, presumably as important steps for the entrance of the preprotein-SecA complex and enhancement of the ATPase activity of SecA.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (28 results)

All 2010 2009 2008 2007 Other

All Journal Article (7 results) (of which Peer Reviewed: 2 results) Presentation (19 results) Book (1 results) Remarks (1 results)

  • [Journal Article] 細菌型Secトランスロコンの構造から明らかとなった蛋白質膜透過装置の構造変化2009

    • Author(s)
      塚崎智也、森博幸
    • Journal Title

      生物物理 49

      Pages: 288-289

    • Related Report
      2009 Final Research Report
  • [Journal Article] 立体構造解析からみえてきたSecAによる蛋白質膜透過の分子メカニズム2009

    • Author(s)
      森博幸、塚崎智也
    • Journal Title

      蛋白質核酸酵素 54

      Pages: 685-695

    • Related Report
      2009 Final Research Report
  • [Journal Article] 細菌型Secトランスロコンの構造から明らかとなった蛋白質膜透過装置の構造変化2009

    • Author(s)
      塚崎智也, 森博幸
    • Journal Title

      生物物理 49

      Pages: 288-289

    • Related Report
      2009 Annual Research Report
  • [Journal Article] 立体構造解析からみえてきたSecAによる蛋白質膜透過の分子メカニズム2009

    • Author(s)
      森博幸, 塚崎智也
    • Journal Title

      蛋白質核酸酵素 54

      Pages: 685-695

    • Related Report
      2009 Annual Research Report
  • [Journal Article]2009

    • Author(s)
      Ito K., Mori H.
    • Journal Title

      Bacterial Secreted Proteins in The Sec protein secretion system(Caister Academic Press, Norfolk, UK)

      Pages: 3-22

    • Related Report
      2009 Annual Research Report
  • [Journal Article] Conformational transition of Sec machinery inferred from bacterial SecYE structures.2008

    • Author(s)
      Tsukazaki, T. *, Mori, H. *, Fukai, S., Ishitani, R., Mori, T., Dohmae, N., Perederina, A., Sugita, Y., Vassylyev, D.G., Ito, K., Nureki O.
    • Journal Title

      Nature 455

      Pages: 988-991

    • NAID

      10025975982

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Conformational transition of Sec machinery inferred from bacterial SecYE structures.2008

    • Author(s)
      Tsukazaki, T., Mori, H., et al. (計11名)
    • Journal Title

      Nature 455

      Pages: 988-991

    • NAID

      10025975982

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] Structure and function of bacterial protein translocation machinery2010

    • Author(s)
      Mori H., Tsukazaki T., Echizen, Y., Nureki, O., Ito, K.
    • Organizer
      第83回日本細菌学会総会W5「細菌のタンパク質分泌系」
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2010-03-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] タンパク質膜透過補助因子SecDFの構造と機能.2010

    • Author(s)
      森博幸
    • Organizer
      2009年度国立遺伝学研究所共同研究会「ゲノム情報を活用した単細胞細胞増殖システムの研究」
    • Place of Presentation
      三島
    • Related Report
      2009 Final Research Report
  • [Presentation] Structure and function of bacterial protein translocation machinery2010

    • Author(s)
      Mori H., Tsukazaki T., Echizen, Y., Nureki, O., Ito, K.
    • Organizer
      第83回日本細菌学会総会W5「細菌のタンパク質分泌系」
    • Place of Presentation
      横浜
    • Related Report
      2009 Final Research Report
  • [Presentation] Molecular mechanisms of SecA mediated protein translocation2009

    • Author(s)
      森博幸, 塚崎智也, 濡木理, 伊藤維昭
    • Organizer
      第47回日本生物物理学会年会 シンポジウム「タンパク質の膜透過輸送の最前線」
    • Place of Presentation
      徳島文理大学
    • Year and Date
      2009-10-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] バクテリアのタンパク質膜透過装置の構造と機能2009

    • Author(s)
      森博幸, 塚崎智也, 越前友香, 濡木理, 伊藤維昭
    • Organizer
      第82回日本生化学会大会 シンポジウム「タンパク質膜透過装置の構造とダイナミックな機能」
    • Place of Presentation
      神戸ポートピアホテル
    • Year and Date
      2009-10-21
    • Related Report
      2009 Annual Research Report
  • [Presentation] Functional dissection of bacterial Sec translocation machinery2009

    • Author(s)
      Mori H., Tsukazaki T., Echizen, Y., Ishitani, R., Nureki, O., Ito, K.
    • Organizer
      International Symposium 'Innovative Nanoscience of Supermolecular Motor Proteins Working in Biomembranes'
    • Place of Presentation
      芝蘭会館 (京都)
    • Year and Date
      2009-09-08
    • Related Report
      2009 Annual Research Report
  • [Presentation] Molecular mechanisms of SecA mediated protein translocation.2009

    • Author(s)
      森博幸、塚崎智也、濡木理、伊藤維昭
    • Organizer
      第47回日本生物物理学会年会シンポジウム「タンパク質の膜透過輸送の最前線」
    • Place of Presentation
      徳島
    • Related Report
      2009 Final Research Report
  • [Presentation] バクテリアのタンパク質膜透過装置の構造と機能.2009

    • Author(s)
      森博幸、塚崎智也、越前友香、濡木理、伊藤維昭
    • Organizer
      第82回日本生化学会大会シンポジウム「タンパク質膜透過装置の構造とダイナミックな機能」
    • Place of Presentation
      神戸
    • Related Report
      2009 Final Research Report
  • [Presentation] Structural analysis of bacterial Sec translocation machinery.2009

    • Author(s)
      Tsukazaki T., Mori H., Echizen, Y., Fukai, S., Ishitani, R., Mori, T., Dohmae, N., Perederina, A., Sugita, Y., Vassylyev, D.G., Ito, K., Nureki, O.
    • Organizer
      International Symposium‘Innovative Nanoscience of Supermolecular Motor Proteins Working in Biomembranes'
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2009 Final Research Report
  • [Presentation] Functional dissection of bacterial Sec translocation machinery.2009

    • Author(s)
      Mori H., Tsukazaki T., Echizen, Y., Ishitani, R., Nureki, O., Ito, K.
    • Organizer
      International Symposium‘Innovative Nanoscience of Supermolecular Motor Proteins Working in Biomembranes'
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2009 Final Research Report
  • [Presentation] Crystal structure of T. thermophilus Sec translocon with an Fab fragment implies a translocation-initiating state of SecY.2008

    • Author(s)
      Tsukazaki, T., Mori, H., et al. (計11名)
    • Organizer
      第31回日本分子生物学会年会、第81回日本生化学会大会 合同大会
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2008-12-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] How does SecA ATPase interact with translocon and drive protein translocation?2008

    • Author(s)
      Mori, H., Tsukazaki, T., Nureki, O. and Ito, K.
    • Organizer
      G-COE International Symposium Frontier of Organelle Dynamics and Protein Functions
    • Place of Presentation
      名古屋(メルパルク名古屋)
    • Year and Date
      2008-03-13
    • Related Report
      2007 Annual Research Report
  • [Presentation] Crystal structure of T. thermophilus Sec translocon with an anti-SecY Fab fragment implies a translocation-initiating state of SecY2008

    • Author(s)
      Tsukazaki T., Mori H., Fukai, S., Ishitani, R., Mori, T., Dohmae, N., Perederina, A., Sugita, Y., Vassylyev, D.G., Ito, K., Nureki, O.
    • Organizer
      第31回日本分子生物学会年会、第81回日本生化学会大会合同大会シンポジウム「タンパク質機能発現システム-シャペロンからトランスロケーターまで」
    • Place of Presentation
      神戸
    • Related Report
      2009 Final Research Report
  • [Presentation] 細菌型Secトランスロコン複合体の結晶構造解析2008

    • Author(s)
      Tsukazaki T., Mori H., Fukai, S., Ishitani, R., Perederina, A., Vassylyev, D.G., Ito, K., Nureki, O.
    • Organizer
      第46回日本生物物理学会シンポジウム「膜を介した物質輸送・シグナル変換の構造基盤」
    • Place of Presentation
      福岡
    • Related Report
      2009 Final Research Report
  • [Presentation] タンパク質膜透過装置の構造と駆動メカニズム2008

    • Author(s)
      森博幸
    • Organizer
      国立遺伝学研究所研究会「細胞周期制御をめぐる単細胞システム分子生物学」
    • Place of Presentation
      三島
    • Related Report
      2009 Final Research Report
  • [Presentation] How does SecA ATPase interact with translocon and drive protein translocation?2008

    • Author(s)
      Mori H.
    • Organizer
      G-COE in Chemistry "Frontier of Organelle Dynamics and Protein Functions""
    • Place of Presentation
      Nagoya, Japan
    • Related Report
      2009 Final Research Report
  • [Presentation] SecA ATPaseはどのようにtransloconと相互作用し、タンパク質膜透過を駆動しているのか?2008

    • Author(s)
      森博幸
    • Organizer
      大阪大学蛋白質研究所セミナー「蛋白質の膜透過と膜挿入の分子メカニズム-その核心に迫る」
    • Place of Presentation
      大阪
    • Related Report
      2009 Final Research Report
  • [Presentation] How does SecA ATPase drive protein translocation?2007

    • Author(s)
      Mori H., Ito K.
    • Organizer
      The 14th East Asia Joint Symposium on Biomedical Research
    • Place of Presentation
      Tokyo
    • Year and Date
      2007-11-14
    • Related Report
      2009 Final Research Report
  • [Presentation] How does SecA ATPase drive protein translocation?2007

    • Author(s)
      森博幸
    • Organizer
      第40回日本発生生物学会・第59回日本細胞生物学会合同大会
    • Place of Presentation
      福岡
    • Related Report
      2009 Final Research Report
  • [Book] The Sec protein secretion system. in Bacterial Secreted Proteins, Ed. K. Wooldridge2009

    • Author(s)
      Ito, K., Mori, H.
    • Publisher
      Academic Press
    • Related Report
      2009 Final Research Report
  • [Remarks]

    • URL

      http://www.virus.kyoto-u.ac.jp/Lab/akiyama/index.html

    • Related Report
      2009 Final Research Report

URL: 

Published: 2007-04-01   Modified: 2016-04-21  

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