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Exploration of target proteins for ubiquitination using fluorescence anisotropy measurement

Research Project

Project/Area Number 19380056
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionAoyama Gakuin University (2010)
Japan Agency for Marine-Earth Science and Technology (2007-2009)

Principal Investigator

ABE Fumiyoshi  Aoyama Gakuin University, 理工学部, 准教授 (30360746)

Project Period (FY) 2007 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥19,500,000 (Direct Cost: ¥15,000,000、Indirect Cost: ¥4,500,000)
Fiscal Year 2010: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2009: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2008: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2007: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Keywords蛍光偏光解消法 / 時間分解測定 / 細胞膜物性 / 蛍光寿命 / 出芽酵母 / ユビキチン機構 / 回転ブラウン運動 / 分子間相互作用
Research Abstract

This study approaches the finding of novel factors that interact with ubiquitination-related proteins by monitoring the rotational motion of proteins. First, I established the experimental procedure to quantify the rotational motion of membrane lipids in yeast. The defect in ergosterol biosynthesis resulted in a decrease in membrane rigidity and an increase in the rotational lipid motion. The measurement of fluorescein-labeled model proteins suggests that this technique is valid for proteins of less than 10 kDa. Sna3 was identified as a factor that potentially interacted with Rsp5 ubiquitin ligase. In the future study, I investigate the molecular interaction between Rsp5 and Sna3 using the system employed in this study.

Report

(5 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report   Self-evaluation Report ( PDF )
  • 2008 Annual Research Report
  • Research Products

    (48 results)

All 2011 2010 2009 2008 2007 Other

All Journal Article (28 results) (of which Peer Reviewed: 28 results) Presentation (18 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Different pressure resistance of lactate dehydrogenases from hagfish is dependent on habitat depth and caused by tetrameric structure dissociation.2011

    • Author(s)
      Nishiguchi, Y., Abe, F., Okada, M.
    • Journal Title

      Marine Biotechnology

      Volume: (In press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Overexpression of EAR1 and SSH4 that encode PPxY proteins in the multivesicular body provides stability of tryptophan permease Tat2 allowing yeast cells to grow under high hydrostatic pressure2010

    • Author(s)
      Hiraki, T., Usui, K., Abe, F.
    • Journal Title

      High Pressure Research 30

      Pages: 514-518

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Overexpression of SNA3 stabilizes tryptophan permease Tat2, potentially competing for the WW domain of Rsp5 ubiquitin ligase with its binding protein Bul12010

    • Author(s)
      Hiraki, T., Abe, F
    • Journal Title

      FEBS Lett 584

      Pages: 55-60

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fluconazole modulates membrane rigidity, heterogeneity and water penetration into the plasma membrane in Saccharomyces cerevisiae2010

    • Author(s)
      Abe, F., Usui, K., Hiraki, T.
    • Journal Title

      Biochemistry 48

      Pages: 8494-8504

    • Related Report
      2010 Final Research Report 2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Overexpression of EAR1 and SSH4 that encode PPxY proteins in the multivesicular body provides stability of tryptophan permease Tat2 allowing yeast cells to grow under high hydrostatic pressure2010

    • Author(s)
      Hiraki, T., Usui, K., Abe, F
    • Journal Title

      High Pressure Research

      Volume: 30 Pages: 514-518

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Overexpression of SNA3 stabilizes tryptophan permease Tat2, potentially competing for the WW domain of Rsp5 ubiquitin ligase with its binding protein Bull.2010

    • Author(s)
      Hiraki, T., Abe, F.
    • Journal Title

      FEBS Lett.

      Volume: 584 Pages: 55-60

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Overexpression of SNA3 stabilizes tryptophan permease Tat2, potentially competing for the WW domain of Rsp5 ubiquitin ligase with its binding protein2010

    • Author(s)
      Hiraki, T., Abe, F.
    • Journal Title

      Bull.FEBS Lett. 584

      Pages: 55-60

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Overexpression of SNA3 stabilizes tryptophan permease Tat2, potentially competing for the WW domain of Rsp5 ubiquitin ligase with its binding protein Bull2010

    • Author(s)
      Toshiki Hiraki
    • Journal Title

      FEBS Lett. 584

      Pages: 55-60

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sorting defects of the tryptophan permease Tat2 in an erg2 yeast mutant2009

    • Author(s)
      Daicho, K., Makino, N. Hiraki, T., Ueno, M., Uritani, M., Abe, F., Ushimaru, T.
    • Journal Title

      FEMS Microbiol. Lett 298

      Pages: 218-227

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Interaction of Bap31 and class I MHC molecules and their traffic out of the endoplasmic reticulum. J2009

    • Author(s)
      Abe, F., Van Prooyen, N., Ladasky, J. J., Edidin, M.
    • Journal Title

      Immunol 182

      Pages: 4776-4783

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mechanistic role of ergosterol in membrane rigidity and cycloheximide resistance in Saccharomyces cerevisiae2009

    • Author(s)
      Abe, F., Hiraki, T.
    • Journal Title

      Biochim. Biophys. Acta 1788

      Pages: 743-752

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Control of Protein and Sterol Trafficking by Antagonistic Activities of a P4-ATPase and Oxysterol Binding Protein Homologue2009

    • Author(s)
      Muthusamy, B-P, Raychaudhuri, S., Natarajan, P., Abe, F., Liu, K., Prinz, W. A. Graham, T. R.
    • Journal Title

      Mol. Biol. Cell 20

      Pages: 2920-2931

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Functional interactions between sphingolipids and sterols in biological membranes regulating cell physiology2009

    • Author(s)
      Guan, X., Souza, C., Pichler, H., Dewhurst, G., Schaad, O., Kajiwara, K., Wakabayashi, H., Ivanova, T., Castillon, G., Piccolis, M., Abe, F., Loewith, R., Funato, K., Wenk, M., Riezman, H.
    • Journal Title

      Mol. Biol. Cell 20

      Pages: 2083-2095

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification and characterization of two alternative σ factors of RNA polymerase in the deep-sea piezophilic bacterium, Shewanella violacea strain DSS122009

    • Author(s)
      Kawano, H., Takahashi, H., Abe, F., Kato, C., Horikoshi, K.
    • Journal Title

      Biochem. Biosci. Biotechnol. 73

      Pages: 200-202

    • NAID

      10027536548

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Sorting defects of the tryptophan permease Tat2 in an erg2 yeast mutant2009

    • Author(s)
      Daicho, K., Makino, N. Hiraki, T., Ueno, M., Uritani, M., Abe, F., Ushimaru, T.
    • Journal Title

      FEMS Microbiol.Lett. 298

      Pages: 218-227

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Mechanistic role of ergosterol in membrane rigidity and cycloheximide resistance in Saccharomyces cerevisiae2009

    • Author(s)
      Abe, F., Hiraki, T.
    • Journal Title

      Biochim.Biophys.Acta 1788

      Pages: 743-752

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Fluconazole modulates membrane rigidity, heterogeneity and water penetration into the plasma membrane in Saccharomyces cerevisiae2009

    • Author(s)
      Fumiyoshi Abe
    • Journal Title

      Biochemistry 48

      Pages: 8494-8504

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanistic role of ergosterol in membrane rigidity and cycloheximide resistance in Saccharomyces cerevisiae2009

    • Author(s)
      Fumiyoshi Abe
    • Journal Title

      Biochim.Biophys.Acta 1788

      Pages: 743-752

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Control of Protein and Sterol Trafficking by Antagonistic Activities of a P4-ATPase and Oxysterol Binding Protein Homologue2009

    • Author(s)
      B-P, Muthusamy
    • Journal Title

      Mol.Biol.Cell 20

      Pages: 2920-2931

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional interactions between sphingolipids and sterols in biological membranes regulating cell physiology2009

    • Author(s)
      X, Guan
    • Journal Title

      Mol.Biol.Cell 20

      Pages: 2083-2095

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sorting defects of the tryptophan permease Tat2 in an erg2 yeast mutant2009

    • Author(s)
      Katsue Daicho
    • Journal Title

      FEMS Microbiol.Lett 298

      Pages: 218-227

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interaction of Bap31 and class I MHC molecules and their traffic out of the endoplasmic reticulum2009

    • Author(s)
      Fumiyoshi Abe
    • Journal Title

      J.Immunol 182

      Pages: 4776-4783

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification and characterization of two alternative σ factors of RNA polymerase in the deep-sea piezophilic bacterium, Shewanella violacea strain DSS122009

    • Author(s)
      Hiroaki Kawano
    • Journal Title

      Biochem.Biosci.Biotechnol 73

      Pages: 200-202

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effects of pressure on enzyme function of Escherichia coli dihydrofolate reductase2008

    • Author(s)
      Ohmae, E., Tatsuta, M., Abe, F., Kato, C., Tanaka, N., Kunugi, S., Gekko, K.
    • Journal Title

      Biochim. Biophys. Acta 1784

      Pages: 1115-1121

    • NAID

      120001092485

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Global screening of genes essential for growth in high-pressure and cold environments: searching for basic adaptive strategies using a yeast deletion library2008

    • Author(s)
      Abe, F., Minegishi, H.
    • Journal Title

      Genetics 178

      Pages: 851-872

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Pressure-adaptive differences in lactate dehydrogenases of three hagfishes: Eptatretus burgeri, Paramyxine atami, and Eptatretus okinoseanus2008

    • Author(s)
      Nishiguchi, Y., Miwa, T., Abe, F.
    • Journal Title

      Extremophiles 12

      Pages: 477-480

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Global screening of genes essential for growth in high-pressure and cold environments : searching for basic adaptive strategies using a yeast deletion library2008

    • Author(s)
      Abe, F., Minegishi, H.
    • Journal Title

      Genetics 178

      Pages: 851-872

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Induction of DAN/TIR yeast cell wall mannoprotein genes in response to high hydrostatic pressure and low temperature2007

    • Author(s)
      Abe, F.
    • Journal Title

      FEBS Lett 581

      Pages: 4993-4998

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Presentation] 圧力とゲノムの摂動で測る細胞内のすき間2010

    • Author(s)
      阿部文快
    • Organizer
      日本生化学会
    • Place of Presentation
      神戸
    • Year and Date
      2010-10-21
    • Related Report
      2010 Final Research Report
  • [Presentation] Spotlight lecture: Dynamics of microbial membranes under high pressure: a study using time-resolved fluorescence anisotropy measurement2010

    • Author(s)
      阿部文快
    • Organizer
      6th International Conference on High Pressure Bioscience and Biotechnology (HPBB2010) 2010
    • Place of Presentation
      Freising, Germany
    • Year and Date
      2010-08-29
    • Related Report
      2010 Final Research Report
  • [Presentation] Dynamics of microbial membranes under high pressure : a study using time-resolved fluorescence anisotropy measurement.2010

    • Author(s)
      Abe, F.
    • Organizer
      6th International Conference on High Pressure Bioscience and Biotechnology (HPBB2010)
    • Place of Presentation
      Freising, Germany
    • Year and Date
      2010-08-29
    • Related Report
      2010 Annual Research Report
  • [Presentation] 圧力とゲノムの摂動で測る細胞内のすき間2009

    • Author(s)
      阿部文快
    • Organizer
      日本生化学会
    • Place of Presentation
      ポートピアホテル、神戸
    • Year and Date
      2009-10-21
    • Related Report
      2009 Self-evaluation Report 2008 Annual Research Report
  • [Presentation] 圧力と蛍光偏光解消法を用いた. 生体膜ダイナミクスの解析(招待講演)2009

    • Author(s)
      阿部文快
    • Organizer
      グローバルCOE「統合物質科学」セミナー
    • Place of Presentation
      京都大学化学研究所、宇治
    • Year and Date
      2009-10-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] 高圧蛍光偏光解消法の開発と微生物細胞膜への圧力効果2009

    • Author(s)
      阿部文快
    • Organizer
      第16回生物関連高圧研究会シンポジウム
    • Place of Presentation
      産業技術総合研究所 臨海副都心センター、東京
    • Year and Date
      2009-07-30
    • Related Report
      2009 Annual Research Report 2009 Self-evaluation Report
  • [Presentation] フルコナゾールによる細胞膜の動的構造変化と erg3 株の耐性2009

    • Author(s)
      阿部文快
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      ノバホール、つくば
    • Year and Date
      2009-07-29
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] フルコナゾールによる細胞膜の動的構造変化とerg3株の耐性2009

    • Author(s)
      阿部文快
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      ノバホール、つくば
    • Year and Date
      2009-07-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] 圧力を用いて細胞内のすき間を測る2008

    • Author(s)
      阿部文快
    • Organizer
      日本分子生物学会
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-11
    • Related Report
      2010 Final Research Report
  • [Presentation] 圧力を用いて細胞内のすき間を測る2008

    • Author(s)
      阿部文快
    • Organizer
      日本分子生物学会
    • Place of Presentation
      ポートピアホテル、神戸
    • Year and Date
      2008-12-11
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] ナノ秒計測で探る細胞膜の動態と薬剤感受性2008

    • Author(s)
      阿部文快
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      北海道大学、札幌
    • Year and Date
      2008-09-11
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] 圧力生理学の挑戦?細胞機能の新たな理解をめざして2008

    • Author(s)
      阿部文快
    • Organizer
      酵母合同シンポジウム
    • Place of Presentation
      神戸
    • Year and Date
      2008-06-05
    • Related Report
      2010 Final Research Report
  • [Presentation] 圧力生理学の挑戦 ~細胞機能の新たな理解をめざして2008

    • Author(s)
      阿部文快
    • Organizer
      酵母合同シンポジウム
    • Place of Presentation
      甲南大学、神戸
    • Year and Date
      2008-06-05
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] ユビキチン化による酵母トリプトファン輸送体の制御と動態-圧力生理学からのアプローチ2007

    • Author(s)
      阿部文快
    • Organizer
      日本トリプトファン研究会第29回学術集会
    • Place of Presentation
      東京
    • Year and Date
      2007-12-08
    • Related Report
      2010 Final Research Report
  • [Presentation] 酵母をモデルとした微生物に対する圧力効果の網羅的解析2007

    • Author(s)
      阿部文快
    • Organizer
      日本高圧力討論会
    • Place of Presentation
      鳥取
    • Year and Date
      2007-11-20
    • Related Report
      2010 Final Research Report
  • [Presentation] 圧力で探る生体膜と膜タンパク質のダイナミクス研究2007

    • Author(s)
      阿部文快
    • Organizer
      2007堀場雅夫賞受賞講演
    • Place of Presentation
      京都
    • Year and Date
      2007-10-17
    • Related Report
      2010 Final Research Report
  • [Presentation] 高圧下におけるユビキチンシステムの生理機能解析とその応用2007

    • Author(s)
      阿部文快
    • Organizer
      日本農芸化学会年会シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2007-03-25
    • Related Report
      2010 Final Research Report
  • [Presentation] 定量的蛍光イメージングからアプローチする酵母研究-蛍光異方性と蛍光共鳴エネルギー移動(FRET)の解析で何がわかるのか2007

    • Author(s)
      阿部文快
    • Organizer
      酵母研究会
    • Place of Presentation
      西宮
    • Year and Date
      2007-03-08
    • Related Report
      2010 Final Research Report
  • [Remarks] ホームページ

    • URL

      http://www.chem.aoyama.ac.jp/Chem/ChemHP/abeflab/

    • Related Report
      2010 Final Research Report
  • [Patent(Industrial Property Rights)] 抗菌剤に対する微生物のMICを予測する方法2008

    • Inventor(s)
      阿部文快
    • Industrial Property Rights Holder
      独立行政法人海洋研究開発機構
    • Industrial Property Number
      2008-231666
    • Filing Date
      2008-09-10
    • Related Report
      2010 Final Research Report 2009 Self-evaluation Report

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Published: 2007-04-01   Modified: 2016-04-21  

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