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Search for adaptive changes in genes affecting phenology of the Japanese oak

Research Project

Project/Area Number 19380089
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 林学・森林工学
Research InstitutionEhime University

Principal Investigator

HARADA Ko  Ehime University, 農学部, 教授 (40150396)

Co-Investigator(Kenkyū-buntansha) KOIKE Takayoshi  北海道大学, 大学院・農学研究院, 教授 (10270919)
Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥19,760,000 (Direct Cost: ¥15,200,000、Indirect Cost: ¥4,560,000)
Fiscal Year 2009: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2008: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2007: ¥10,270,000 (Direct Cost: ¥7,900,000、Indirect Cost: ¥2,370,000)
Keywordsミズナラ / フェノロジー / フィトクローム / 環境適応 / 遺伝子マーカー / trnQ-trnS spacer / 系統地理 / 産地試験 / 沿海州 / フィトクローム遺伝子 / 発芽 / 開葉 / メチオニンシンターゼ遺伝子
Research Abstract

It has been suggested that Japanese oak (Quercus mongolica var. crispula) in the northern and the southern part of Japan had experienced a different history of adaptation during the glacial age migrations and settlements. In order to detect adaptive changes in genes we cloned phytochrome genes in the oak as one of the candidates. We also collected seeds from the northern and the southern parts of Japan and planted in the experimental forest in Sapporo and Ehime to measure phonological traits. We found three phytochrome genes, and also that nucleotide diversity was high in the northern populations. In the field experiment, we observed that there are considerable difference in early death rates and secondary flash rates in the northern and the southern populations.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (34 results)

All 2009 2008 2007 Other

All Journal Article (18 results) (of which Peer Reviewed: 18 results) Presentation (10 results) Book (3 results) Remarks (3 results)

  • [Journal Article] Patterns of nucleotide diversity at the methionine synthase locus in fragmented and continuous populations of a wind-pollinated tree2009

    • Author(s)
      Quang, ND, Ikeda, S., Harada, K.
    • Journal Title

      Quercus mongolica var. crispula. Jour. Heredity 100(in press)

      Pages: 762-770

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The effects of cleared larch canopy and nitrogen supply on gas exchange and leaf traits in deciduous broad-leafed tree seedlings.2009

    • Author(s)
      Kitaoka, S., Watanabe, Y., Koike, T.
    • Journal Title

      Tree Physiology 29

      Pages: 1503-1511

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Patterns of nucleotide diversity at the methionine synthase locus in fragmented and continuouspopulatons of a wind-pollinated tree, Quercus mongolica var. crispula2009

    • Author(s)
      Quang ND, Ikeda S, Harada K
    • Journal Title

      Journal of Heredity 100

      Pages: 762-770

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The effects of cleared larch canopy and nitrogen supply on gas exchange and leaf traits in deciduous broad-leafed tree seedlings2009

    • Author(s)
      Kitaoka S, Watanabe Y, Koike T
    • Journal Title

      Tree Physiology 29

      Pages: 1503-1511

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Change in the CO_2 balance under a series of forestry activities in a coo 1-temperate mixed 2 forest with dense undergrowth2009

    • Author(s)
      Takagi K, Koike T, et al.
    • Journal Title

      Global Change Biology 14

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nucleotide variation in Quercus crispula Blume.2008

    • Author(s)
      Quang, ND, Ikeda, S., Harada, K.
    • Journal Title

      Heredity 101

      Pages: 166-174

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Changes in petiole hydraulic structure and leaf water flow in birch and oak saplings in an enhanced CO2 environment.2008

    • Author(s)
      Eguchi, N., Morii, N., Ueda, T., Funada, R., Takagi, K., Hiura, T., Sasa, K. Koike, T.
    • Journal Title

      Tree Physiology 28

      Pages: 287-295

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effects of elevated CO2 and nitrogen on wood structure related to water transport in seedlings of two deciduous broad-leaved tree species.2008

    • Author(s)
      Watanabe, Y, Tobita, H, Kitao, M, Maruyama, Y, Choi, D.S., Sasa, K, Funada, R., Koike, T.
    • Journal Title

      Trees-Structure and Function 22

      Pages: 403-411

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Nucleotide variation in Quercus rispula Blume2008

    • Author(s)
      N. D. Quang
    • Journal Title

      Heredity 101

      Pages: 166-174

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Changes in petiole hydraulic structure and leaf water flow in birch and oaksaplings in an enhanced CO_2 environment.2008

    • Author(s)
      Eguchi, N.
    • Journal Title

      Tree Physiology 28

      Pages: 287-295

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Leaf morphological and functional adaptation of Siebold beech (Fagus crenata)seedlings grown at tow water regimes. (2008)103-105.2008

    • Author(s)
      Koike, T.
    • Journal Title

      Proc. The 8th IUFRO International Beech Symposium

      Pages: 103-105

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 落葉広葉樹個葉における被食防衛物質の局在と変動環境に対する応答2008

    • Author(s)
      渡邊陽子
    • Journal Title

      樹木医学研究 12

      Pages: 137-138

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Changes in petiole hydraulic structure and leaf water flow in birch and oak saplings in an enhanced CO_2 environment2008

    • Author(s)
      Eguchi, N., Morii, N., Ueda, T., Funada, R., Takagi, K., Hiura, T. and Sasa, K. and Koike, T.
    • Journal Title

      Tree Physiology 28

      Pages: 287-295

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phylogeographic structure and late Quaternary population history of the Japanese oak Quercus mongolica var.2007

    • Author(s)
      Okaura, T., Quang, N.D., Ubukata, M., Harada, K.
    • Journal Title

      crispula and related species revealed by chloroplast DNA variation. Genes Genetic Systems 82

      Pages: 465-477

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Nitrogen dynamics in leaves of deciduous broad-leaved tree seedlings grown in a unmanaged larch plantation in northern Japan.2007

    • Author(s)
      Koike, T., Kitaoka, S., Masyagina, O.V., Watanabe, Y., Ji, D.H., Maruyama, Y., Sasa, K.
    • Journal Title

      Eurasian Journal of Forest Research 10

      Pages: 115-119

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Methane emission from leaves of larch, birch and oak saplings grown under elevated CO2 in northern Japan -A preliminary study-2007

    • Author(s)
      Kitaoka, S., Sakata, T., Koike, T., Tobita, H., Uemura, A., Kitao, M., Maruyama, Y., Sasa, K., Utsugi, H.
    • Journal Title

      Journal of Agriculture Meteorology 63

      Pages: 201-206

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phylogeographic structure and late Quaternary population history of the Japanese oak Quercus mongolia var.crispula and related species revealed by chloroplast DNA variation2007

    • Author(s)
      Okaura, T. Quang, N.D., Ubukata, M., Harada, K.
    • Journal Title

      Genes and Genetic Systems 82

      Pages: 465-477

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Methane emission from leaves of larch, birch and oak saplings grown under elevated CO_2 in northem Japan -A preliminary study2007

    • Author(s)
      Kitaoka, S., Sakata, T., Koike, T., Tobita, H., Uemura, A., Kitao, M., Maruyama, Y., Sasa, K.and Utsugi, H.
    • Journal Title

      Journal of Agricultural Meteology 63

      Pages: 201-206

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] 四国におけるブナ集団の遺伝的多様性2009

    • Author(s)
      原田光・甲斐央浩
    • Organizer
      生物系三学会中国四国支部会大会
    • Place of Presentation
      高知大学
    • Year and Date
      2009-05-17
    • Related Report
      2009 Annual Research Report
  • [Presentation] 四国におけるブナ集団の遺伝的多様性2009

    • Author(s)
      甲斐央浩・原田光
    • Organizer
      生物系三学会大会中国四国支部大会一般講演
    • Place of Presentation
      高知
    • Related Report
      2009 Final Research Report
  • [Presentation] 開放系大気CO_2増加(FACE)施設で育成した冷温帯主要落葉樹萌芽の光および窒素利用特性2008

    • Author(s)
      北岡 哲
    • Organizer
      日本森林学会北海道支部会
    • Place of Presentation
      札幌
    • Year and Date
      2008-11-10
    • Related Report
      2008 Annual Research Report
  • [Presentation] 開放系大気CO_2増加(FACE)施設で育成した冷温帯主要落葉樹萌芽の光および窒素利用特性. 日本森林学会北海道支部論文集2008

    • Author(s)
      北岡 哲
    • Organizer
      日本森林学会北海道支部会
    • Place of Presentation
      札幌
    • Year and Date
      2008-11-10
    • Related Report
      2008 Annual Research Report
  • [Presentation] 愛媛県大野ヶ原におけるブナ林の遺伝的空間構造の解析2008

    • Author(s)
      甲斐 央浩・原田 光
    • Organizer
      日本森林学会
    • Place of Presentation
      東京農工大学農学部
    • Year and Date
      2008-03-28
    • Related Report
      2007 Annual Research Report
  • [Presentation] 開放系大気CO2増加(FACE)で生育した冷温帯落葉広葉樹の光合成特性2008

    • Author(s)
      北岡 哲ら、および 小池 孝良
    • Organizer
      日本森林学会
    • Place of Presentation
      東京農工大学農学部
    • Year and Date
      2008-03-28
    • Related Report
      2007 Annual Research Report
  • [Presentation] 変動環境に対するミズナラ稚樹の葉内被食防衛物質の局在の変化2008

    • Author(s)
      渡辺 陽子、大塚 優佳、日向 潔美、笹 賀一郎、小池 孝良
    • Organizer
      日本森林学会
    • Place of Presentation
      東京農工大学農学部
    • Year and Date
      2008-03-27
    • Related Report
      2007 Annual Research Report
  • [Presentation] 愛媛県大野ヶ原におけるブナ林の遺伝的空間構造の解析2008

    • Author(s)
      甲斐央浩・神岡新也・二宮生夫・原田光
    • Organizer
      第119回日本森林学会年次大会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] ミズナラのメチオニンシンターゼ遺伝子に見る最近の適応進化の証拠2007

    • Author(s)
      グエンドククアン・池田 創作・原田 光
    • Organizer
      日本森林学会
    • Place of Presentation
      九州大学理学部
    • Year and Date
      2007-04-03
    • Related Report
      2007 Annual Research Report
  • [Presentation] 遺伝子から見た東アジアのナラ類の変遷と環境適応2007

    • Author(s)
      原田光
    • Organizer
      生物系三学会中国四国支部大会シンポジウム講演
    • Place of Presentation
      鳥取
    • Related Report
      2009 Final Research Report
  • [Book] 北の森づくりQ&A2009

    • Author(s)
      小池孝良 編著
    • Total Pages
      201
    • Publisher
      北方林業会
    • Related Report
      2009 Annual Research Report
  • [Book] 林木の集団遺伝学入門2008

    • Author(s)
      原田 光
    • Total Pages
      117
    • Publisher
      (社)林木育種協会
    • Related Report
      2007 Annual Research Report
  • [Book] 林木の集団遺伝学入門

    • Author(s)
      原田光
    • Total Pages
      117
    • Publisher
      林木育種協会
    • Related Report
      2009 Final Research Report
  • [Remarks] 原田光(2009)四国のブナ林は生き残れるか?~遺伝子多様性の観点から~.愛媛大学農学部出張出前講座シリーズ第6回.愛媛の森林(3): 22-23.

    • Related Report
      2009 Final Research Report
  • [Remarks]

    • URL

      http://web.agr.ehime-u.ac.jp/~frb/frbtop.htm

    • Related Report
      2009 Final Research Report
  • [Remarks]

    • URL

      http://www.agr.hokudai.ac.jp/fres/silv/index.php?%BF%B9%CE%D3%C0%B8%CD%FD%C0%B8%C2%D6#content_1_4

    • Related Report
      2009 Annual Research Report

URL: 

Published: 2007-04-01   Modified: 2016-04-21  

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