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Molecular phylogeny and gene evolution in Eurasian small mammals during the late Tertiary to the present

Research Project

Project/Area Number 19405010
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section海外学術
Research Field Biodiversity/Systematics
Research InstitutionHokkaido University

Principal Investigator

SUZUKI Hitoshi  Hokkaido University, 大学院・地球環境科学研究院, 准教授 (40179239)

Co-Investigator(Kenkyū-buntansha) SATO Jun  福山大学, 生命工学部, 講師 (80399162)
篠原 明男  宮崎大学, フロンティア科学実験総合センター・実験支援部門, 助教 (50336294)
甲能 直樹  独立行政法人国立科学博物館, 地学研究部, 主任研究官 (20250136)
Co-Investigator(Renkei-kenkyūsha) SHINOHARA Akio  宮崎大学, フロンティア科学実験総合センター, 助教 (50336294)
KOHNO Naoki  独立行政法人国立科学博物, 地学研究部, 主任研究官 (20250136)
Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2009: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2008: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2007: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords第三紀 / 哺乳類 / 遺伝子 / 進化 / 分子系統 / 環境適応 / 系統地理 / 適応放散 / 日本列島 / ユーラシア
Research Abstract

The present molecular phylogenetic analyses revealed that lineages of rabbits, moles, mustelids, and lepolids have diverged at 500-600 and 200-300 million years ago and extended their lineages to Southeast Asia, India, Myanmar, and East Asia, including the Japanese Islands. In a analysis on a coat color related gene, Mc1r, a high proportion of nonsynonymous to synonymous substitutions was found on the ancestral stem of the subgenus Mus, perhaps because of its rapid habitat change during the course of its evolution.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (60 results)

All 2010 2009 2008 2007

All Journal Article (24 results) (of which Peer Reviewed: 20 results) Presentation (34 results) Book (2 results)

  • [Journal Article] Detection of recombinant haplotypes in wild mice (Mus musculus) provides new insights into the origin of Japanese mice2010

    • Author(s)
      Nunome, M, Ishimori, C, Aplin, K, Tsuchiya, K, Yonekawa, H, Moriwaki, K, Suzuki, H.
    • Journal Title

      Molecular Ecology (in press)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The influence of Pleistocene refugia on the evolutionary history of the Japanese hare, Lepus brachyurus2010

    • Author(s)
      Nunome, M, Torii, H, Matsuki, R, Kinoshita, G, Suzuki, H.
    • Journal Title

      Zoological Science

    • NAID

      40017358638

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial phylogeo- graphy and population his tory of the large Japanese wood mouse (Apodemus speciosus) on Sado Island, Japan2010

    • Author(s)
      Tomozawa, M, Tomida, H, Suzuki, H, Tsuchiya, K.
    • Journal Title

      Mammal Study 35

      Pages: 93-97

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Muslepidoides (Muridae, Rodentia) of Central Burma is a Distinct Species of Potentially Great Evolutionary and Biogeographic Significance2010

    • Author(s)
      Shimada, T, Aplin, KP, Suzuki, H.
    • Journal Title

      Zoological Science 27(5)

      Pages: 449-459

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Detection of recombinant haplotypes in wild mice(Mus musculus)provides new insights into the origin of Japanese mice.2010

    • Author(s)
      Nunome Mitsuo
    • Journal Title

      Molecular Ecology (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deciphering and dating the red panda's ancestry and early adaptive radiation of Musteloidea2009

    • Author(s)
      Sato, JJ, Wolsan, M, Minami, S, Hosoda, T, Sinaga, MH, Hiyama, K, Yamaguchi, Y, Suzuki, H.
    • Journal Title

      Molecular Phylogenetics and Evolution 53

      Pages: 907-922

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comparative analysis of evolutionary modes in Mc1r coat color gene in wild mice and mustelids2009

    • Author(s)
      Shimada T, Sato JJ, Aplin KP, Suzuki H
    • Journal Title

      Genes & Genet Systems 84

      Pages: 225-231

    • NAID

      10026091041

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] オキナワトゲネズミ再発見と, トゲネズミ研究の最近2009

    • Author(s)
      山田文雄, 黒岩麻里, 鈴木仁, 村田智慧
    • Journal Title

      哺乳類科学 49

    • NAID

      10030471878

    • Related Report
      2009 Final Research Report
  • [Journal Article] A molecular phylogenetic view of mammals in the "three-story museum" of Hokkaido, Honshu, and Ryukyu Islands2009

    • Author(s)
      Suzuki, H.
    • Journal Title

      The Wild Mammals of Japan.(Eds., Ohdachi SD, Ishibashi Y, Iwasa MA, Saitoh T, Shoukadoh)

      Pages: 261-263

    • Related Report
      2009 Final Research Report
  • [Journal Article] Mozaic genome structure of multiple subspecies in the Japanese wild mouse Mus musculus2009

    • Author(s)
      Nunome., M., Suzuki H., Moriwaki K.
    • Journal Title

      The Wild Mammals of Japan.(Eds., Ohdachi SD, Ishibashi Y, Iwasa MA, Saitoh T, Shoukadoh)

      Pages: 180-181

    • Related Report
      2009 Final Research Report
  • [Journal Article] Comparative analysis of evolutionary modes in Mc1r coat color gene in wild mice and mustelids.2009

    • Author(s)
      Tomofumi Shimada
    • Journal Title

      Genes & Genetic Systems 84

      Pages: 225-231

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deciphering and dating the red panda's ancestry.2009

    • Author(s)
      Jun J.Sato
    • Journal Title

      Mol Phylogenet Evol 53

      Pages: 907-922

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A biogeographic view of Apodemus in Asia and Europe inferred from nuclear and mitochondrial gene sequences2008

    • Author(s)
      Suzuki, H., Filippucci, MG., Chelomina, GN., Sato, JJ., Serizawa, K, Nevo, E.
    • Journal Title

      Biochemical Genetics 46

      Pages: 329-346

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A trend of central versus peripheral structuring in mitochondrial and nuclear gene sequences of the Japanese wood mouse, Apodemus speciosus2008

    • Author(s)
      Tomozawa, M, Suzuki, H.
    • Journal Title

      Zoological Science 25

      Pages: 273-285

    • NAID

      40016029301

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic relationships of the short-faced mole, Scaptochirus moschatus (Mammalia : Eulipotyphla), among Eurasian fossorial moles, as inferred from mitochondrial and nuclear gene sequences2008

    • Author(s)
      Shinohara, A, Kawada, S, Harada, M, Koyasu, K, Oda, S, Suzuki, H.
    • Journal Title

      Mammal Study 33

      Pages: 77-82

    • NAID

      10027006818

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and development of microsatellite markers for the Japanese dormouse, Glirulus japonicus2008

    • Author(s)
      Yasuda, SP, Nakayama, A, Iwabuchi, M, Minato, S, Tsuchiya, K, Suzuki, H.
    • Journal Title

      Molecular Ecology Resources 9

      Pages: 569-571

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] 日本の野生哺乳類にみる毛色の進化2008

    • Author(s)
      鈴木仁
    • Journal Title

      生物の科学遺伝 62(6)

      Pages: 60-61

    • Related Report
      2009 Final Research Report
  • [Journal Article] A biogeographic view of Apodemus in Asia and Europe inferred from nuclear and mitochondrial gene sequences2008

    • Author(s)
      Hitoshi Suzuki
    • Journal Title

      Biochemical Genetics 46

      Pages: 329-334

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Trend of Central versus Peripheral Structuring Appeared in Mitochondrial and Nuclear Gene Sequences of the Japanese Wood Mouse Apodemus speciosus2008

    • Author(s)
      Morihiko Tomozawa
    • Journal Title

      Zoologicl Science 25

      Pages: 273-285

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic relationships of the short-faced mole, Scaptochirus moschatus (Mammalia : Eulipotyphla), among Eurasian fossorial moles, as inferred from mitochondrial and nuclear gene sequences2008

    • Author(s)
      Akio Shinohara
    • Journal Title

      Mammal Study 33

      Pages: 77-82

    • NAID

      10027006818

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic relationships and divergence times among dormice (Rodentia, Gliridae) based on three nuclear genes2007

    • Author(s)
      Nunome, M., Yasuda, SP., Sato, JJ., Vogel, P., Suzuki, H.
    • Journal Title

      Zoological Scripta 36

      Pages: 537-546

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Complex phylogeographic structuring in a continental small mammal from East Asia, the rice field mouse, Mus caroli(Rodentia, Muridae).2007

    • Author(s)
      Tomofumi Shimada
    • Journal Title

      Mammal Study 32

      Pages: 49-62

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rediscovery of Mus nitidulus Blyth, 1859(Rodentia, Muridae), an endemic murine rodent of the central basin of Myanmar.2007

    • Author(s)
      Tomofumi Shimada
    • Journal Title

      Zootaxa 1498

      Pages: 45-68

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic relationships and divergence times among dormice(Rodentia,Gliridae)based on three nuclear genes.2007

    • Author(s)
      Mitsuo Nunome
    • Journal Title

      Zoologica Scripta 36

      Pages: 537-546

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] ユーラシア産野生ハツカネズミの系統地理学的解析2009

    • Author(s)
      臼田大輝
    • Organizer
      日本遺伝学会第81回大会
    • Place of Presentation
      松本
    • Year and Date
      2009-09-17
    • Related Report
      2009 Final Research Report
  • [Presentation] 日本産小型哺乳類の系統地理学的概観と進化遺伝学への活用2009

    • Author(s)
      鈴木仁
    • Organizer
      日本遺伝学会ワークショップ : 遺伝学の素材としての日本の野生生物 (オーガナイザー)
    • Place of Presentation
      松本
    • Year and Date
      2009-09-16
    • Related Report
      2009 Final Research Report
  • [Presentation] A role of Pleistocene refugia in shaping genetic diversity of the Japanese hare, Lepus brachyurus.2009

    • Author(s)
      Mitsuo Nunome
    • Organizer
      第10回国際哺乳類学会議
    • Place of Presentation
      アルゼンチン・メンドーサ
    • Year and Date
      2009-08-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] 野生ネズミ類の多様性の歴史とゲノム学への活用2009

    • Author(s)
      鈴木仁
    • Organizer
      第89回理研バイオリソースセンターセミナー
    • Place of Presentation
      つくば
    • Year and Date
      2009-08-04
    • Related Report
      2009 Final Research Report
  • [Presentation] Mus 属のユーラシア亜熱帯域での展開とモロシヌスの来た道2009

    • Author(s)
      鈴木仁
    • Organizer
      第23回モロシヌス研究会
    • Place of Presentation
      大津市
    • Year and Date
      2009-07-11
    • Related Report
      2009 Final Research Report
  • [Presentation] 日本産モグラ類の分子系統と系統地理2009

    • Author(s)
      桐原崇
    • Organizer
      研究交流会「哺乳類の多様性研究」
    • Place of Presentation
      札幌
    • Year and Date
      2009-06-23
    • Related Report
      2009 Final Research Report
  • [Presentation] ミトコンドリアDNAから見た台湾産イタチ類相の形成史2009

    • Author(s)
      細田徹治
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      台北大会
    • Related Report
      2009 Final Research Report
  • [Presentation] 複数遺伝子座を用いたニホンノウサギ4亜種の遺伝的背景の解析2009

    • Author(s)
      布目三夫
    • Organizer
      日本哺乳類学会2009年度大会
    • Place of Presentation
      (口頭発表)
    • Related Report
      2009 Final Research Report
  • [Presentation] A role of Pleistocene refugia in shaping genetic diversity of the Japanese hare, Lepus brachyurus2009

    • Author(s)
      Nunome, M.
    • Organizer
      第10回国際哺乳類学会議
    • Place of Presentation
      アルゼンチン ポスター発表
    • Related Report
      2009 Final Research Report
  • [Presentation] Multilocus phylogeny of Mustelidae and the ancestroy of the South American species2009

    • Author(s)
      Wolsan, M.
    • Organizer
      第10回国際哺乳類学会議
    • Place of Presentation
      アルゼンチン
    • Related Report
      2009 Final Research Report
  • [Presentation] トゲネズミの進化的位置づけ2008

    • Author(s)
      鈴木仁
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      山口
    • Year and Date
      2008-09-13
    • Related Report
      2009 Final Research Report
  • [Presentation] ミトコンドリアDNAおよび核遺伝子配列からみたコウベモグラ Mogera2008

    • Author(s)
      桐原崇
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      山口
    • Year and Date
      2008-09-13
    • Related Report
      2009 Final Research Report
  • [Presentation] 複数の遺伝子配列の変異に基づく日本産野生ハツカネズミの起源2008

    • Author(s)
      鈴木仁
    • Organizer
      日本動物学会第79回大会
    • Place of Presentation
      福岡
    • Year and Date
      2008-09-06
    • Related Report
      2009 Final Research Report
  • [Presentation] 日本産野生ハツカネズミのが持つことなる亜種に由来する4つの遺伝的要素の特定2008

    • Author(s)
      鈴木仁
    • Organizer
      日本遺伝学会第80回大会
    • Place of Presentation
      名古屋
    • Year and Date
      2008-09-03
    • Related Report
      2009 Final Research Report
  • [Presentation] 第三紀後期以降の哺乳類の断続的放散と日本産小型哺乳類の起源~韓国から日本への系統移入の多様な物語~2008

    • Author(s)
      鈴木仁
    • Organizer
      韓国国立バイオリソースセンター (National Institute of Biological Resources(NIBR))
    • Place of Presentation
      仁川
    • Year and Date
      2008-05-21
    • Related Report
      2009 Final Research Report
  • [Presentation] 第三紀後期以降の哺乳類の断続的放散と日本産小型哺乳類の起源-韓国から日本への系統移入の多様な物語2008

    • Author(s)
      鈴木仁
    • Organizer
      韓国国立バイオリソースセンター(National Institute of Biological Resources)特別講演会
    • Place of Presentation
      韓国国立バイオリソースセンター(韓国仁川)
    • Year and Date
      2008-05-21
    • Related Report
      2008 Annual Research Report
  • [Presentation] マイクロサテライトを用いたニホンヤマネの配偶システムと巣箱共有個体の血縁関係解析2008

    • Author(s)
      安田俊平
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      山口
    • Related Report
      2009 Final Research Report
  • [Presentation] マイクロサテライトマーカーを用いたアカネズミ島嶼集団の遺伝解析2008

    • Author(s)
      友澤森彦
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      山口
    • Related Report
      2009 Final Research Report
  • [Presentation] 第四紀の複数のレフュージアがニホンノウサギの遺伝的多様性に与えた影響についての系統地理学的解析2008

    • Author(s)
      布目三夫
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      山口
    • Related Report
      2009 Final Research Report
  • [Presentation] 野生ハツカネズミの系統地理学的研究へのSNPsの活用2008

    • Author(s)
      臼田大輝
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      山口
    • Related Report
      2009 Final Research Report
  • [Presentation] Mc1r遺伝子の変異に基づく日本産クマネズミ Rattus rattus の遺伝的背景の解析2008

    • Author(s)
      神戸嘉一
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      山口
    • Related Report
      2009 Final Research Report
  • [Presentation] ESU策定のための汎用分子マーカー開発の試み -ニホンヤマネをモデルとして-2008

    • Author(s)
      安田俊平
    • Organizer
      日本進化学会第10回大会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] The role of Pleistocene refugia in shaping genetic diversity of the Japanese hare (Lepus brachyurus)2008

    • Author(s)
      布目三夫
    • Organizer
      Hokkaido University Sustainability Weeks G8 Summit Round
    • Place of Presentation
      札幌
    • Related Report
      2009 Final Research Report
  • [Presentation] 日本固有種ニホンテンの保全遺伝学的研究2008

    • Author(s)
      佐藤淳
    • Organizer
      第55回日本生態学会
    • Place of Presentation
      福岡
    • Related Report
      2009 Final Research Report
  • [Presentation] 日本産野生ハツカネズミにおける亜種間組換体探索と二次的接触の時空間動態把握2007

    • Author(s)
      鈴木仁
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      東京都・東京農工大学・農学部
    • Year and Date
      2007-09-17
    • Related Report
      2007 Annual Research Report
  • [Presentation] A thirty-year project of the genetic survey on the wild mice Modern Achievements in Population2007

    • Author(s)
      Suzuki, H
    • Organizer
      Evolutionary and Ecological Genetics
    • Place of Presentation
      ウラジオストック
    • Related Report
      2009 Final Research Report
  • [Presentation] 下顎骨形態およびBmp4遺伝子からみたコウベモグラ (Mogera wogura) の種内変異2007

    • Author(s)
      桐原崇
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] ニホンノウサギにみられる冬毛の白化が集団の遺伝的分化に与える影響の検証2007

    • Author(s)
      布目三夫
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] 多重遺伝子族5S rDNAの変異を利用した集団の遺伝的分化の検出2007

    • Author(s)
      安田俊平
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] 日本産野生ハツカネズミにおける亜種間組換体探索と二次的接触の時空間動態把握2007

    • Author(s)
      鈴本仁
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] 複数の核遺伝子から見たアカネズミの遺伝的多様性~伊豆諸島集団の遺伝的独自性~2007

    • Author(s)
      友澤森彦
    • Organizer
      日本哺乳類学会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] 複数の核遺伝子を用いたアカネズミ地域集団の歴史推定2007

    • Author(s)
      友澤森彦
    • Organizer
      日本動物学会
    • Place of Presentation
      弘前
    • Related Report
      2009 Final Research Report
  • [Presentation] ニホンヤマネは何種いるのか : 遺伝子の解析から見えてきたこと2007

    • Author(s)
      安田俊平
    • Organizer
      日本動物学会
    • Place of Presentation
      弘前
    • Related Report
      2009 Final Research Report
  • [Presentation] 連鎖遺伝子群のイントロン配列解析と日本産野生ハツカネズミの起源2007

    • Author(s)
      鈴木仁
    • Organizer
      日本遺伝学会第79回大会
    • Place of Presentation
      岡山
    • Related Report
      2009 Final Research Report
  • [Book] The Wild Mammals of Japan. 分担執筆 261~2632009

    • Author(s)
      Suzuki Hitoshi
    • Total Pages
      544
    • Publisher
      Shoukadoh, Kyoto
    • Related Report
      2009 Annual Research Report
  • [Book] 第3章レッドエコシステム ボルネオ (大崎満、岩熊編)2008

    • Author(s)
      甲山隆司, 鈴木仁
    • Publisher
      岩波出版
    • Related Report
      2009 Final Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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