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Mechanism of Nucleotide Binding Domain engine in ABC transporters

Research Project

Project/Area Number 19590215
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field General physiology
Research InstitutionKeio University (2008-2009)
Osaka Medical College (2007)

Principal Investigator

SOHMA Yoshiro  Keio University, 医学部, 准教授 (60268183)

Co-Investigator(Kenkyū-buntansha) KUBOTA Takahiro  大阪医科大学, 医学部, 教授 (10084906)
SOHMIYA Koichi  大阪医科大学, 医学部, 助教 (20319544)
YAMAMOTO Daisuke  大阪医科大学, 医学部, 准教授 (50240106)
Research Collaborator HWANG T.-c  米ミズーリ大学, 医学部, 教授
Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2009: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2008: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2007: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
KeywordsABCトランスポータ / CFTR / チャネル / Nucleotide Binding Domain / ATP加水分解 / ゲーティング / アニオン / 二量体化 / Nucleotide Bindin Domain / ATP 加水分解 / ゲーテイング
Research Abstract

Physiologically important ABC transporters share Nucleotide Binding Domain (NBD) to make a driving force for displaying their functions. From a series of functional data, we proposed a putative structure of the NBD engine of CFTR in one of the transitional states during its gating cycle. We also suggested a possibility that NBD engine utilized thermal motion energy of water molecules as well as ATP-hydrolysis energy. In addition, we obtained a reconstituted three dimensional structure of CFTR using a single particle analysis, which leads us to an upcoming direct observations of conformational changes of NBD engine.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (23 results)

All 2010 2009 2008

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (17 results)

  • [Journal Article] State-dependent modulation of CFTR gating by pyrophosphate.2009

    • Author(s)
      Tsai MF, Shimizu H, Sohma Y, Li M, Hwang TC
    • Journal Title

      J. Gen. Physiol. 133

      Pages: 405-419

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] State-dependent modulation of CFTR gating by pyrophosphate.2009

    • Author(s)
      Tsai MF, Shimizu H, Sohma Y, Li M Hwang TC
    • Journal Title

      Journal of General Physiology 133

      Pages: 405-419

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Threedimensional reconstruction of human cystic fibrosis transmembrane conductance regulator chloride channel revealed an ellipsoidal structure with orifices beneath the putative transmembrane domain.2008

    • Author(s)
      Mio K, Ogura T, Mio M, Shimizu H, Hwang TC, Sato C, Sohma Y
    • Journal Title

      J. Biol. Chem. 283

      Pages: 30300-30310

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Potentiation of BK channels by α5β1 integrin activation in arteriolar smooth muscle.2008

    • Author(s)
      Wu X, Yang Y, Gui P, Sohma Y, Meininger GA, Davis GE, Braun AP, Davis MJ
    • Journal Title

      J Physiol 586(6)

      Pages: 1699-1713

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Three-dimensional reconstruction of human cystic fibrosis trans membrane conductance regulator chloride channel revealed an ellipsoidal structure with orifices beneath the putative transme mbrane domain.2008

    • Author(s)
      Mio K, Ogura T, Mio M, Shimizu H, Hwang TC, Sato C, Sohma Y
    • Journal Title

      Journal of Biological Chemistry 283

      Pages: 30300-30310

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Potentiation of BK channels by α5β1 integrin activation in arteriolar smooth muscle2008

    • Author(s)
      Wu X, Yang Y, Gui P, Sohma Y, et. al.
    • Journal Title

      Journal of Physiology 586

      Pages: 1699-1713

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] olecular mechanism of a multi-functional Cl- channel CFTR. Symposium "Regulation of various physiological functions by chloridetransporting proteins"2010

    • Author(s)
      Sohma Y
    • Organizer
      87th Annual Meeting, The Physiological Society of Japan
    • Place of Presentation
      Morioka, Japan
    • Related Report
      2009 Final Research Report
  • [Presentation] Functional Probing of an ABC Transpoter, Cystic Fibrosis Transmembraneconduc tance Regulator (CFTR) Channel by Small Aromatic Carboxylic Acids.2010

    • Author(s)
      Sohma Y, Nakamura Y, Yu YC, Furukawa T, Matsuzaki Y, Abe Y, Yasui M
    • Organizer
      83rd Annual Meeting of The Japanese Pharmacological Society
    • Place of Presentation
      Osaka, Japan
    • Related Report
      2009 Final Research Report
  • [Presentation] 芳香族カルボン酸をプローブとして用いたABCトランスポータ・CFTRチャネルの構造機能解析2010

    • Author(s)
      相馬義郎, 他(8名中1番目)
    • Organizer
      第83回日本薬理学会年会
    • Place of Presentation
      大阪国際会議場(大阪)
    • Related Report
      2009 Annual Research Report
  • [Presentation] Effects of aromatic carboxylic acids on genistein-and curcumin-potentiated G551D-CFTR2010

    • Author(s)
      Nakamura Y, Sohma Y, et al(10名中10番目)
    • Organizer
      54^<th> Biophysical Society Annual Meeting
    • Place of Presentation
      San Francisco, USA
    • Related Report
      2009 Annual Research Report
  • [Presentation] Blocking kinetics of CFTR channel by aromatic carboxylic acid positional isomers characterised using a novel amplitude distribution analysis method2010

    • Author(s)
      Yu YC, Sohma Y, et al(8名中5番目)
    • Organizer
      54^<th> Biophysical Society Annual Meeting
    • Place of Presentation
      San Francisco, USA
    • Related Report
      2009 Annual Research Report
  • [Presentation] Three dimensional reconstruction of CFTR chloride channel using single particle analysis.2009

    • Author(s)
      Mio K, Ogura T, Mio M, Shimizu H, Hwang TC, Sato C, Sohma Y
    • Organizer
      53^<th> Biophysical Society Annual Meeting
    • Place of Presentation
      Boston, Massachusetts, USA
    • Year and Date
      2009-03-03
    • Related Report
      2008 Annual Research Report
  • [Presentation] Two distinct gating cycles of CFTR chloride channels.2009

    • Author(s)
      Tsai MF, Shimizu H, Sohma Y, Li M, Hwang TC.
    • Organizer
      53^<th> Biophysical Society Annual Meeting
    • Place of Presentation
      Boston, Massachusetts, USA
    • Year and Date
      2009-03-03
    • Related Report
      2008 Annual Research Report
  • [Presentation] 3D STRUCTURE OF HUMNAN CFTR CHLORIDE CHANNEL REVEALED AN ELLIPSOIDAL FORM WITH ORIFICES BENEATH THE PUTATIVE TRANSMEMBRANE DOMAIN.2009

    • Author(s)
      Sohma Y, Mio K, Ogura T, Mio M, Shimizu H, Hwang TC, Sato C.
    • Organizer
      XXXVI International Congress of Physiological Sciences (IUPS2009) Function of Life: Elements and Integration
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2009 Final Research Report
  • [Presentation] Three dimensional reconstruction of CFTR chloride channel using single particle analysis.2009

    • Author(s)
      Mio K, Ogura T, Mio M, Shimizu H, Hwang TC, Sato C, Sohma Y
    • Organizer
      53th Biophysical Society Annual Meeting
    • Place of Presentation
      Boston, Massachusetts, USA
    • Related Report
      2009 Final Research Report
  • [Presentation] Two distinct gating cycles of CFTR chloride channels.2009

    • Author(s)
      sai MF, Shimizu H, Sohma Y, Li M, Hwang TC.
    • Organizer
      53th Biophysical Society Annual Meeting
    • Place of Presentation
      Boston, Massachusetts, USA
    • Related Report
      2009 Final Research Report
  • [Presentation] Two different binding sites for small aromatic carboxylic acids in CFTR2009

    • Author(s)
      Yu YC, Sohma Y, et al(7名中4番目)
    • Organizer
      The 40th NIPS International Symposium PAT-CVR2009
    • Place of Presentation
      Okazaki, Japan
    • Related Report
      2009 Annual Research Report
  • [Presentation] 3D structure of humnan CFTR chloride channel revealed an ellipsoidal form with orifices beneath the putative transmembrane domain2009

    • Author(s)
      相馬義郎, 他(7名中1番目)
    • Organizer
      XXXVI International Congress of Physiological Sciences(IUPS2009)
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2009 Annual Research Report
  • [Presentation] CFTRチャネルにおけるATP加水分解ゲーティングェンジンの動作機構2008

    • Author(s)
      相馬義郎
    • Organizer
      日本生物物理学会第46回年会(シンポジウム
    • Place of Presentation
      福岡国際会議場 (福岡)
    • Year and Date
      2008-12-03
    • Related Report
      2008 Annual Research Report
  • [Presentation] Mechanism of ATP hydrolysisdriven NBD gating engine in CFTR channel. Symposium "Dynamic Picture of Ion Channel upon Gating"2008

    • Author(s)
      Sohma Y
    • Organizer
      46th Annual Meeting, The Biophysical Society of Japan
    • Place of Presentation
      Fukuoka, Japan
    • Related Report
      2009 Final Research Report
  • [Presentation] Kiss-and-run gating of CFTR chloride channels2008

    • Author(s)
      Shimizu H, Sohma Y, Li M, Hwang TC
    • Organizer
      Joint Meeting of the Biophysical Society 52th Annual Meeting & 16th International Biophysics Congress(IUPAB)
    • Place of Presentation
      Long Beach,Califbrnia,USA
    • Related Report
      2007 Annual Research Report
  • [Presentation] Effects of W401 mutations on the stability of the open state in CFTR gating2008

    • Author(s)
      Tsai MF, Shimizu H, Sohma Y, Li M, Hwang TC
    • Organizer
      Joint Meeting of the Biophysical Society 52th Annual Meeting & 16th International Biophysics Congress(IUPAB)
    • Place of Presentation
      Long Beach,California,USA
    • Related Report
      2007 Annual Research Report
  • [Presentation] Missfiring mechanism in NBD gating engine of CFTR chloride channel2008

    • Author(s)
      Shimizu H, Sohma Y, Li M, Kubota T, Kono K, Hwang TC
    • Organizer
      85th Annual Meeting of Physiological Society of Japan
    • Place of Presentation
      Shinjyuku,Tokyo,Japan
    • Related Report
      2007 Annual Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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