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Detecting neofunctionalized genes in a genome

Research Project

Project/Area Number 19681020
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field 基礎ゲノム科学
Research InstitutionThe Graduate University for Advanced Studies

Principal Investigator

INNAN Hideki  The Graduate University for Advanced Studies, 先導科学研究科, 准教授 (90444140)

Project Period (FY) 2007 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥20,670,000 (Direct Cost: ¥15,900,000、Indirect Cost: ¥4,770,000)
Fiscal Year 2010: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2009: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2008: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2007: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Keywordsゲノム / シロイヌナズナ / 分子進化 / 進化 / 遺伝子変換 / 遺伝子重複 / 酵母 / 集団遺伝学 / ゲノム進化 / 再編
Research Abstract

This project was aimed to theoretically understand the evolutionary mechanism by which a genome acquires novel functional genes through gene duplication. The theoretical result should contribute to the developing algorithms to detect new genes from genomes. In the first half of the funded period (H19 and H20), I successfully developed theories on the pattern of DNA polymorphism and divergence in duplicated genes. This directly resulted in a new algorithm to scan a genome for evidence of newly arisen functional genes. The algorithm is simple enough to apply to any genome, from yeast to human. In the second half (H21 and H22), by using this algorithm, we identified a number of such new genes in yeasts and fruit flies, which gave insights into what kind of genes contributed the recent genome evolution of these species.

Report

(6 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report   Self-evaluation Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (109 results)

All 2011 2010 2009 2008 2007 Other

All Journal Article (77 results) (of which Peer Reviewed: 52 results) Presentation (26 results) Remarks (6 results)

  • [Journal Article] Neutral and non-neutral evolution of duplicated genes with gene conversion.2011

    • Author(s)
      Fawcett, J.A., H.Innan
    • Journal Title

      Genes(belongs to the special issue "Gene Conversion in Duplicated Genes" edited by Innan H.) 2

      Pages: 191-209

    • Related Report
      2010 Final Research Report
  • [Journal Article] The rate and tract length of gene conversion between duplicated genes.2011

    • Author(s)
      Mansai, S.P., Kado, T., H.Innan
    • Journal Title

      Genes(belongs to the special issue "Gene Conversion in Duplicated Genes" edited by Innan H.) 2

      Pages: 313-331

    • Related Report
      2010 Final Research Report
  • [Journal Article] Selection fine tunes the expression of microRNA target genes in Arabidopsis.2011

    • Author(s)
      Takuno, S., H.Innan
    • Journal Title

      Mol. Biol. Evol. in press

    • Related Report
      2010 Final Research Report
  • [Journal Article] Natural selection on gene order in the genome re-organization process after whole genome duplication of yeast.2011

    • Author(s)
      Sugino, R.P., H.Innan
    • Journal Title

      Mol. Biol. Evol. in press

    • Related Report
      2010 Final Research Report
  • [Journal Article] The evolution of gene duplications : classifying and distinguishing between models.2011

    • Author(s)
      Innan, H., F.Kondrashov
    • Journal Title

      Nat.Rev.Genet.

      Volume: 11 Pages: 97-108

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Selection fine tunes the expression of microRNA target genes in Arabidopsis.2011

    • Author(s)
      Takuno, S., H.Innan
    • Journal Title

      Mol.Biol.Evol.

      Volume: 28(In press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Natural selection on gene order in the genome re-organization process after whole genome duplication of yeast.2011

    • Author(s)
      Sugino, R.P., H.Innan
    • Journal Title

      Mol.Biol.Evol.

      Volume: 28(In press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] On the estimation of the insertion time of LTR retrotransposable elements.2010

    • Author(s)
      Kijima, T.E., H.Innan
    • Journal Title

      Mol. Biol. Evol. 27

      Pages: 896-904

    • Related Report
      2010 Final Research Report
  • [Journal Article] The evolution of gene duplications: classifying and distinguishing between models.2010

    • Author(s)
      Innan, H., F.Kondrashov
    • Journal Title

      Nat. Rev. Genet. 11

      Pages: 97-108

    • Related Report
      2010 Final Research Report
  • [Journal Article] An explicit signature of balancing selection for color vision variation in New World Monkeys.2010

    • Author(s)
      Hiwatashi, T., Okabe, H.Tsutsui, T., Hiramatsu, C., Melin, A.D., Oota, H., Schaffner, C.M., Aureli, F., Fedigan, L.M., Innan, H., S.Kawamura
    • Journal Title

      Mol. Biol. Evol. 27

      Pages: 453-464

    • Related Report
      2010 Final Research Report
  • [Journal Article] The power of the methods for detecting interlocus gene conversion.2010

    • Author(s)
      Mansai, S.P., H.Innan
    • Journal Title

      Genetics 184

      Pages: 517-527

    • Related Report
      2010 Final Research Report
  • [Journal Article] Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome.2010

    • Author(s)
      Arguello, J.R., Zhang, Y., Kado, T., Fan, C., Zhao, R., Innan, H., Wang, W., Long, M.
    • Journal Title

      Mol. Biol. Evol. 27

      Pages: 848-861

    • Related Report
      2010 Final Research Report
  • [Journal Article] The power of the methods for detecting interlocus gene conversion.2010

    • Author(s)
      Mansai, S.P., H.Innan
    • Journal Title

      Genetics

      Volume: 184 Pages: 517-527

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] On the estimation of the insertion time of LTR retrotransposable elements2010

    • Author(s)
      Kijima, T.E., H.Innan
    • Journal Title

      Mol.Biol.Evol.

      Volume: 27 Pages: 896-904

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The evolution of gene duplications: classifying and distinguishing between models.2010

    • Author(s)
      Innan, H., F. kondrashov
    • Journal Title

      Nat. Rev. Genet. 11

      Pages: 97-108

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] An explicit signature of balancing selection for color vision variation in New World Monkeys.2010

    • Author(s)
      Hiwatashi, T., Okabe, H. Tsutsui, T., Hiramatsu, C., Melin, A.D., Oota, H., Schaffner, C.M., Aureli, F., Fedigan, L.M., Innan, H., S. Kawamura
    • Journal Title

      Mol. Biol. Evol. 27

      Pages: 453-464

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] The power of the methods for detecting interlocus gene conversion.2010

    • Author(s)
      Mansai, S.P., H. Innan
    • Journal Title

      Genetics 184

      Pages: 517-527

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome.2010

    • Author(s)
      Arguello, J.R., Zhang, Y., Kado, T., Fan, C., Zhao, R., Innan, H., Wang, W., Long. M.
    • Journal Title

      Mol. Biol. Evol. 27

      Pages: 848-861

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] On the estimation of the insertion time of LTR retrotransposable elements.2010

    • Author(s)
      Kijima. T.E., H. Innan
    • Journal Title

      Mol. Bio. Evol. 27

      Pages: 896-904

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] The evolution of gene duplications : classifying and distinguishing between models2010

    • Author(s)
      Innan, H.
    • Journal Title

      Nat.Rev.Genet. 11

      Pages: 97-108

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An explicit signature of balancing selection for color vision variation in New World Monkeys2010

    • Author(s)
      Hiwatashi, T.
    • Journal Title

      Mol.Biol.Evol 27

      Pages: 453-464

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The power of the methods for detecting interlocus gene conversion2010

    • Author(s)
      Mansai, S.P.
    • Journal Title

      Genetics 184

      Pages: 517-527

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Recombination yet inefficient selection along the Drosophila melanogaster subgrouv's fourth chromosome2010

    • Author(s)
      Arguello, J.R.
    • Journal Title

      Mol.Biol.Evol. 27

      Pages: 848-904

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] On the estimation of the insertion time of LTR retrotransposable elements2010

    • Author(s)
      Kijima, T.E.
    • Journal Title

      Mol.Biol.Evol. 27

      Pages: 896-904

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice.2009

    • Author(s)
      Takahashi, Y., K.M.Teshima, S.Yokoi, H.Innan, K.Shimamoto
    • Journal Title

      Proc. Natl. Acad. Sci. USA. 106

      Pages: 4555-4560

    • Related Report
      2010 Final Research Report
  • [Journal Article] Potential of fish opsin gene duplications to evolve new adaptive functions.2009

    • Author(s)
      Gojobori, J., H.Innan
    • Journal Title

      Trends Genet. 25

      Pages: 198-202

    • Related Report
      2010 Final Research Report
  • [Journal Article] mbs: modifying Hudson's ms software to generate samples of DNA sequences with a biallelic site under selection.2009

    • Author(s)
      Teshima, K.M., H.Innan
    • Journal Title

      BMC Bioinformatics 10

      Pages: 166-166

    • Related Report
      2010 Final Research Report
  • [Journal Article] Population genetic models of duplicated genes.2009

    • Author(s)
      Innan, H.
    • Journal Title

      Genetica 137

      Pages: 19-37

    • Related Report
      2010 Final Research Report 2009 Self-evaluation Report
  • [Journal Article] Gene trees, species trees, and species networks.2009

    • Author(s)
      Nakhleh, L., D.Ruths, H.Innan
    • Journal Title

      In "Meta-analysis and Combining Information in Genetics", edited by R.Guerra and D.Allison. Chapman & Hall

      Pages: 275-303

    • Related Report
      2010 Final Research Report
  • [Journal Article] Selection to maintain paralogous amino acid differences under the pressure of gene conversion in the heat shock protein genes in yeast.2009

    • Author(s)
      Takuno, S., H.Innan
    • Journal Title

      Mol. Biol. Evol. 26

      Pages: 2655-2659

    • Related Report
      2010 Final Research Report
  • [Journal Article] Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice.2009

    • Author(s)
      Takahashi, Y., K.M. Teshima, S. Yokoi, H. Innan, K. Shimamoto
    • Journal Title

      Proc. Natl. Acad. Sci. USA. 106

      Pages: 4555-4560

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Potential of fish opsin gene duplications to evolve new adaptive functions.2009

    • Author(s)
      Gojobori, J., H. Innan
    • Journal Title

      Trends Genet 25

      Pages: 198-202

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] mbs: modifying Hudson's ms software to generate samples of DNA sequences with a biallelic site under selection.2009

    • Author(s)
      Teshima, K.M., H. Innan
    • Journal Title

      BMC Bioinformatics 10

      Pages: 166-166

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Meta-analysis and Combining Information in Genetics2009

    • Author(s)
      Nakhleh, L., D. Ruths, H. Innan, D. Allison.
    • Journal Title

      Chapman & Hall

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Selection to maintain paralogous amino acid differences under the pressure of gene conversion in the heat shock protein genes in yeast.2009

    • Author(s)
      Takuno, S., H. Innan
    • Journal Title

      Mol. Biol. Evol. 26

      Pages: 2655-2659

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Potential of fish opsin gene duplications to evolve new adaptive functions2009

    • Author(s)
      Gojobori, J.
    • Journal Title

      Trends Genet. 25

      Pages: 198-202

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice2009

    • Author(s)
      Takahashi, Y.
    • Journal Title

      PNAS 106

      Pages: 4555-4560

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] mbs : modifying Hudson's ms software to generate samples of DNA sequences with a biallelic site under selection2009

    • Author(s)
      Teshima, K.M.
    • Journal Title

      BMC Bioinformatics 10

      Pages: 166-166

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Population genetic models of duplicated genes2009

    • Author(s)
      Innan, H.
    • Journal Title

      Genetica 137

      Pages: 19-37

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gene trees, species trees, and species networks2009

    • Author(s)
      Nakhleh, L.,D.
    • Journal Title

      "Meta-analysis and Combining Information in Genetics", edited by R.Guerra and D.Allison. Chapman & Hall.

      Pages: 275-303

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Selection to maintain paralogous amino acid differences under the pressure of gene conversion in the heat shock protein genes in yeast2009

    • Author(s)
      Takuno, S.
    • Journal Title

      Mol.Biol.Evol. 26

      Pages: 2655-2659

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Variations in Hdl proteins, Hd3a promoters, and Ehdl expression levels contribute to diversity of flowering time in cultivated rice2009

    • Author(s)
      Takahashi, Y., K. M. Teshima, S. Yokoi, H. Innan and K Shimamoto
    • Journal Title

      PNAS 106

      Pages: 4555-4560

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Potential of fish opsin gene duplications to evolve new adaptive functions2009

    • Author(s)
      Gojobori, J. and H. Innan
    • Journal Title

      Trends in Genetics (in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Population genetic models of duplicated genes2009

    • Author(s)
      Innan, H.
    • Journal Title

      Genetica (in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of complexity in miRNA mediated gene regulation systems.2008

    • Author(s)
      Takuno, S., H.Innan
    • Journal Title

      Trends in Genet. 24

      Pages: 57-59

    • Related Report
      2010 Final Research Report
  • [Journal Article] Inferring the process of human-chimpanzee speciation.2008

    • Author(s)
      Takahasi, K., H.Innan
    • Journal Title

      Encyclopedia of Life Sciences.

    • Related Report
      2010 Final Research Report
  • [Journal Article] Neofunctionalization of duplicated genes under the pressure of gene conversion.2008

    • Author(s)
      Teshima, KM., H.Innan
    • Journal Title

      Genetics 178

      Pages: 1385-1398

    • Related Report
      2010 Final Research Report
  • [Journal Article] Non-independent domestication of the two rice subspecies Oryza sativa subsp. indica and subsp. japonica, demonstrated by multilocus microsatellites.2008

    • Author(s)
      Gao, L.-z., H.Innan
    • Journal Title

      Genetics 179

      Pages: 965-976

    • Related Report
      2010 Final Research Report
  • [Journal Article] Efficient inference of bacterial strain tree from genome-scale multi-locus data.2008

    • Author(s)
      Than, C., R.Sugino, H.Innan, L.Nakhleh
    • Journal Title

      Bioinformatics 24

    • Related Report
      2010 Final Research Report
  • [Journal Article] The direction of linkage disequilibrium : a new measure based on ancestral-derived status of segregating alleles.2008

    • Author(s)
      Takahasi, K.R., H.Innan
    • Journal Title

      Genetics 179

      Pages: 1705-1712

    • Related Report
      2010 Final Research Report
  • [Journal Article] Detecting local adaptation using the joint sampling of polymorphism data in the parental and derived populations.2008

    • Author(s)
      Innan, H., Y.Kim
    • Journal Title

      Genetics 179

      Pages: 1713-1720

    • Related Report
      2010 Final Research Report
  • [Journal Article] The Evolutionary Rate of Duplicated Genes under Concerted Evolution.2008

    • Author(s)
      Mano, S., H.Innan
    • Journal Title

      Genetics 180

      Pages: 493-505

    • Related Report
      2010 Final Research Report
  • [Journal Article] Preservation of a pseudogene by gene conversion and diversifying selection.2008

    • Author(s)
      Takuno, S., T.Nishio, Y.Satta, H.Innan
    • Journal Title

      Genetics 180

      Pages: 517-531

    • Related Report
      2010 Final Research Report
  • [Journal Article] Duplication and gene conversion in the Drosophila melanogaster genome.2008

    • Author(s)
      Osada, N., H.Innan
    • Journal Title

      PLoS Genet. 4

    • Related Report
      2010 Final Research Report
  • [Journal Article] Evolution of complexity in miRNA mediated gene regulation systems.2008

    • Author(s)
      Takuno, S., H. Innan
    • Journal Title

      Trends in Genet 24

      Pages: 57-59

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Inferring the process of human-chimpanzee speciation.2008

    • Author(s)
      Takahasi, K., H. Innan
    • Journal Title

      Encyclopedia of Life Sciences

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Neofunctionalization of duplicated genes under the pressure of gene conversion.2008

    • Author(s)
      Teshima, KM., H. Innan
    • Journal Title

      Genetics 178

      Pages: 1385-1398

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Non-independent domestication of the two rice subspecies, Oryza sativa subsp.2008

    • Author(s)
      Gao, L.-z., H. Innan
    • Journal Title

      indica and subsp. japonica, demonstrated by multilocus microsatellites. Genetics 179

      Pages: 965-976

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Efficient inference of bacterial strain tree from genome-scale multi-locus data.2008

    • Author(s)
      Than, C., R. Sugino, H. Innan, L. Nakhleh
    • Journal Title

      Bioinfomatics 24

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] The direction of linkage disequilibrium: a new measure based on ancestral-derived status of segregating alleles.2008

    • Author(s)
      Takahasi, K.R., H. Innan
    • Journal Title

      Genetics 179

      Pages: 1705-1712

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Detecting local adaptation using the joint sampling of polymorphism data in the parental and derived populations.2008

    • Author(s)
      Innan, H., Y. Kim
    • Journal Title

      Genetics 179

      Pages: 1713-1720

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] The Evolutionary Rate of Duplicated Genes under Concerted Evolution.2008

    • Author(s)
      Mano, S., H. Innan
    • Journal Title

      Genetics 180

      Pages: 493-505

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Preservation of a pseudogene by gene conversion and diversifying selection.2008

    • Author(s)
      Takuno, S., T. Nishio, Y. Satta, H. Innan
    • Journal Title

      Genetics 180

      Pages: 517-531

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Duplication and gene conversion in the Drosophila melanogaster genome.2008

    • Author(s)
      Osada, N., H. Innan
    • Journal Title

      PLoS Genet 4

      Pages: 1000305-1000305

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Inferring the process of human-chimpanzee speciation2008

    • Author(s)
      Takahasi, K., and H. Innan
    • Journal Title

      Encyclopedia of Life Sciences (online book)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Non-independent domestication of the two rice subspecies, Oryza sativa subsp. indica and subsp. japonica, demonstrated by multilocus microsatellites2008

    • Author(s)
      Gao, L.-z., and H. Innan
    • Journal Title

      Genetics 179

      Pages: 965-976

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The direction of linkage disequilibrium : a new measure based on ancestral-derived status of segregating alleles2008

    • Author(s)
      Takahasi, K. R., and H. Innan
    • Journal Title

      Genetics 179

      Pages: 1705-1712

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Detecting local adaptation using the joint sampling of polymorphism data in the parental and derived populations2008

    • Author(s)
      Innan, H., and Y. Kim
    • Journal Title

      Genetics 179

      Pages: 1713-1720

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The evolutionary rate of duplicated genes under concerted evolution2008

    • Author(s)
      Mano, S. and H. Innan, H.
    • Journal Title

      Genetics 180

      Pages: 493-505

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preservation of a pseudogene by gene conversion and diversifying selection2008

    • Author(s)
      Takuno, S., T. Nishio, Y. Satto and H. Innan
    • Journal Title

      Genetics 180

      Pages: 517-531

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Duplication and gene conversion in the Drosophila melanogaster genome2008

    • Author(s)
      Osada N. and H. Innan
    • Journal Title

      PLoS Genetics 4

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of complexity in miRNA mediated gene regulation systems2008

    • Author(s)
      Takuno, S., and H. Innan
    • Journal Title

      Trends in Genetics 24

      Pages: 57-59

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Neofunctionalization of duplicated genes under the pressure of gene conversion2008

    • Author(s)
      Teshima, KM., and H. Innan
    • Journal Title

      Genetics 178

      Pages: 1385-1398

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Inferring the process of human-chimpanzee speciation2008

    • Author(s)
      Takahashi, K., and H. Innan
    • Journal Title

      Encyclopedia of Life Sciences

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Non-independent domestication of the two rice subspecies, Oryza sativa subsp. indica and subsp. japonica, demonstrated by multilocus microsatellites2008

    • Author(s)
      Gao, L.-z., and H. Innan
    • Journal Title

      Genetics (In press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The direction of linkage disequilibrium: a new measure based on ancestral-derived status of segregating alleles2008

    • Author(s)
      Takahasi, K.R., and H. Innan
    • Journal Title

      Genetics (In press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Detecting local adaptation using the joint sampling of polymorphism data in the parental and derived populations2008

    • Author(s)
      Innan, H., and Y. Kim
    • Journal Title

      Genetics (In press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] 交叉と遺伝子変換による組換え率の推定法, 伝子変換の検出方法の比較2009

    • Author(s)
      角友之、印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-18
    • Related Report
      2010 Final Research Report
  • [Presentation] 遺伝子変換の検出方法の比較2009

    • Author(s)
      萬歳明香、印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-18
    • Related Report
      2010 Final Research Report
  • [Presentation] 交叉と遺伝子変換による組換え率の推定法2009

    • Author(s)
      角友之、印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-18
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] 遺伝子変換の検出方法の比較2009

    • Author(s)
      萬歳明香、印南秀樹
    • Organizer
      遺伝学
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-18
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] 交叉と遺伝子変換による組換え率の推定法2009

    • Author(s)
      角友之
    • Organizer
      遺会学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-18
    • Related Report
      2009 Annual Research Report
  • [Presentation] 遺伝子変換の検出方法の比較2009

    • Author(s)
      萬歳明香
    • Organizer
      遺会学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-18
    • Related Report
      2009 Annual Research Report
  • [Presentation] 自然選択の影響をうけたDNA配列を生成するCoalescentシミュレーションプログラムの開発2009

    • Author(s)
      手島康介、印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-17
    • Related Report
      2010 Final Research Report 2009 Self-evaluation Report
  • [Presentation] 硬骨魚におけるオプシン遺伝子の重複とその適応的役割2009

    • Author(s)
      五條堀淳、印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-17
    • Related Report
      2010 Final Research Report 2009 Annual Research Report 2009 Self-evaluation Report
  • [Presentation] LTR レトロトランスポゾンの転移時期の推定に対する遺 伝子変換の影響2009

    • Author(s)
      木島隆之、印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-17
    • Related Report
      2010 Final Research Report
  • [Presentation] LTRレトロトランスポゾンの転移時期の推定に対する遺伝子変換の影響2009

    • Author(s)
      木島隆之、印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-17
    • Related Report
      2009 Annual Research Report 2009 Self-evaluation Report
  • [Presentation] 自然選択の影響をうけたDNA配列を生成するCoaiescentシミュレーションプログラムの開発2009

    • Author(s)
      手島康介
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-17
    • Related Report
      2009 Annual Research Report
  • [Presentation] Detecting gene conversion between duplicated genes2009

    • Author(s)
      Innan H.
    • Organizer
      PAG 2009
    • Year and Date
      2009-01-10
    • Related Report
      2010 Final Research Report 2008 Annual Research Report
  • [Presentation] Detecting gene conversion between duplicated genes.2009

    • Author(s)
      Innan, H.
    • Organizer
      PAG 2009
    • Place of Presentation
      San Diego
    • Year and Date
      2009-01-10
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] 相互作用のあるときの2遺伝子座モデルとその応用2008

    • Author(s)
      印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2008-09-04
    • Related Report
      2010 Final Research Report
  • [Presentation] 相互作用のあるときの2遺伝子座モデルとその応用2008

    • Author(s)
      印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2008-09-04
    • Related Report
      2009 Self-evaluation Report 2008 Annual Research Report
  • [Presentation] Coevolution of duplicated genes2008

    • Author(s)
      Innan H.
    • Organizer
      BGRS
    • Year and Date
      2008-06-25
    • Related Report
      2010 Final Research Report 2008 Annual Research Report
  • [Presentation] Coevolution of duplicated genes.2008

    • Author(s)
      Innan, H.
    • Organizer
      BGRS
    • Place of Presentation
      Novosivirsk, Russia
    • Year and Date
      2008-06-25
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] Signature of neofunctionalization of duplicated genes under the pressure of gene conversion2008

    • Author(s)
      Innan, H., K. Teshima, N. Osada
    • Organizer
      SMBE
    • Year and Date
      2008-06-06
    • Related Report
      2010 Final Research Report 2009 Self-evaluation Report 2008 Annual Research Report
  • [Presentation] No genetic evidence for complex speciation of humans and chimpanzees2008

    • Author(s)
      Yamamichi, M., Innan H.
    • Organizer
      SMBE
    • Year and Date
      2008-06-06
    • Related Report
      2010 Final Research Report
  • [Presentation] 重複遺伝子の共進化2007

    • Author(s)
      印南秀樹
    • Organizer
      染色体学会
    • Place of Presentation
      総合研究大学院大学
    • Year and Date
      2007-11-27
    • Related Report
      2010 Final Research Report 2007 Annual Research Report
  • [Presentation] 連鎖不平衡の方向性2007

    • Author(s)
      印南秀樹、高橋亮
    • Organizer
      遺伝学会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2007-09-20
    • Related Report
      2010 Final Research Report
  • [Presentation] 協調進化する多重遺伝子族の進化速度2007

    • Author(s)
      間野修平, 印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2007-09-20
    • Related Report
      2010 Final Research Report
  • [Presentation] 重複遺伝子における多様化選択と遺伝子変換の関係2007

    • Author(s)
      宅野将平, 西尾剛, 印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2007-09-20
    • Related Report
      2010 Final Research Report
  • [Presentation] 連鎖不平衡の方向性2007

    • Author(s)
      印南秀樹、高橋亮
    • Organizer
      遺伝学会
    • Place of Presentation
      岡山大学
    • Year and Date
      2007-09-20
    • Related Report
      2007 Annual Research Report
  • [Presentation] 協調進化する多重遺伝子族の進化速度2007

    • Author(s)
      間野修平, 印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      岡山大学
    • Year and Date
      2007-09-20
    • Related Report
      2007 Annual Research Report
  • [Presentation] 重複遺伝子における多様化選択と遺伝子変換の関係2007

    • Author(s)
      宅野将平, 西尾 剛, 印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      岡山大学
    • Year and Date
      2007-09-20
    • Related Report
      2007 Annual Research Report
  • [Remarks] ホームページ等

    • URL

      http://www.sendou.soken.ac.jp/esb/innan/InnanLab/

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://www.sendou.soken.ac.jp/esb/innan/InnanLab/

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.sendou.soken.ac.jp/esb/innan/InnanLab/

    • Related Report
      2009 Self-evaluation Report
  • [Remarks]

    • URL

      http://www.sendou.soken.ac.jp/esb/innan/InnanLab/

    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • URL

      http://www.sendou.soken.ac.jp/esb/innan/InnanLab/

    • Related Report
      2008 Annual Research Report
  • [Remarks]

    • URL

      http://www.sendou.soken.ac.jp/esb/innan/InnanLab/

    • Related Report
      2007 Annual Research Report

URL: 

Published: 2007-04-01   Modified: 2016-04-21  

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