Development of docking scoring functions for in silico screening

• Project/Area Number: 19710173
• Research Category: Grant-in-Aid for Young Scientists (B)
• Allocation Type: Single-year Grants
• Research Field: Applied genomics
• Research Institution: The University of Tokyo
• Principal Investigator: ONODERA Kenji The University of Tokyo, 生産技術研究所, 助教 (30391907)
• Project Period (FY): 2007 – 2008
• Project Status: Completed (Fiscal Year 2008)
• Budget Amount: ¥3,360,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥360,000); Fiscal Year 2008: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000); Fiscal Year 2007: ¥1,800,000 (Direct Cost: ¥1,800,000)
• Keywords: 創薬 / ドッキング / データベース

Research Abstract

This research is committed to develop docking scoring function for in silico screening. The docking scoring function show twice better percentage to find the correct ligands compared to their default scoring functions.

Research Products

• [Journal Article] Universal Optimizations of Scoring Functions for Virtual Screening (2010)
  • Author(s): Onodera K, Kamijo S
  • Journal Title: CBI Journal
  • NAID: 130004138115
  • Peer Reviewed
• [Journal Article] Analyses of conditions for KMSSS loop in tyrosyl-tRNA synthetase by building a mutant library. (2009)
  • Author(s): Kamijo S, Fujii A, Onodera K, Wakabayashi K
  • Journal Title: J Biochem. 146 Pages: 241-50
  • NAID: 130000102320
  • Peer Reviewed
• [Journal Article] タンパク質への非天然アミノ酸の導入に用いられるアンバーサプレッサーtRNAの改良 (2009)
  • Author(s): 藤井、小野寺、上條
  • Journal Title: 生産研究 61 Pages: 111-115
  • NAID: 130000102286
• [Journal Article] Analyses of conditions for KMSSS loop in tyrosyl-tRNA synthe tase by building a mutant library. (2009)
  • Author(s): Shunsuke Kamijo
  • Journal Title: Journal of Biochemistry 146 Pages: 241-250
  • Peer Reviewed
• [Journal Article] タンパク質への非天然アミノ酸の導入に用いられるアンバーサプレッサーtRNAの改良 (2009)
  • Author(s): 藤井秋彦
  • Journal Title: 生産研究 61 Pages: 111-115