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Distribution and importance of extracellular DNA in the subsurface sediments

Research Project

Project/Area Number 19740315
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Geology
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

TAKEUCHI Mio  National Institute of Advanced Industrial Science and Technology, 地圏資源環境研究部門, 主任研究員 (20357403)

Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥3,270,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥570,000)
Fiscal Year 2009: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2008: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2007: ¥800,000 (Direct Cost: ¥800,000)
Keywords細胞外DNA / 地下圏微生物 / RNA / 古細菌 / 微生物相 / 陸域地下圏 / 微生物相解析 / 嫌気的メタン酸化 / 粘土層 / 炭素循環 / 地球化学 / 大深度地下 / 核酸 / 微生物 / 堆積物
Research Abstract

Extracellular DNA was quantified with terrestrial subsurface sediments. Extracellular DNA was detected at 2.9-28.3 ng/g dry weight sediment and decreased with depth. Microbial community analysis using the extracellular DNA yielded significantly low number of OTUs, suggesting that the extracellular DNA was fragmented or damaged in the environment. RNA based community analysis revealed variety of active microbes (Proteobacteria, Chloroflexi, Acidobacteria, Miscellaneous Crenarchaeotic Group (MCG), ANME) in the terrestrial subsurface environment.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (13 results)

All 2009 2008 2007 Other

All Journal Article (6 results) (of which Peer Reviewed: 5 results) Presentation (7 results)

  • [Journal Article] Bacterial and Archaeal 16S rRNA Genes in Late Pleistocene to Holocene Muddy Sediments from the Kanto Plain of Japan2009

    • Author(s)
      Takeuchi, M., Komai, T., Hanada, S., Tamaki, H., Tanabe, S., Miyachi, Y., Uchiyama, M., Nakazawa, T., Kimura, K., Kamagata, Y.
    • Journal Title

      Geomicrobiology Journal 26:2

      Pages: 104-118

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Bacterial and archaeal 16S rRNA genes in Holocene marine sediments from the Kanto Plain2009

    • Author(s)
      Mio Takeuchi, et al
    • Journal Title

      Geomicrobiology Journal 26

      Pages: 104-118

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 地下圏微生物活動に対する難透水層の役割2007

    • Author(s)
      竹内美緒
    • Journal Title

      地学雑誌 vol.116,no.6

      Pages: 915-921

    • NAID

      10025677643

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] 地下微生物研究の地圏環境修復への応用2007

    • Author(s)
      竹内 美緒
    • Journal Title

      Green Report 2007(地圏資源環境研究部門成果報告)

      Pages: 17-19

    • Related Report
      2007 Annual Research Report
  • [Journal Article] 地下圏微生物活動に対する難透水層の役割2007

    • Author(s)
      竹内 美緒
    • Journal Title

      地学雑誌 116

      Pages: 915-921

    • NAID

      10025677643

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Bacterial and archaeal 16S rRNA genes in Holocene marine sediments from the Kanto Plain

    • Author(s)
      Mio Takeuchi
    • Journal Title

      Geomicrobiology Journal (投稿中)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] Microbial World in the Subsurface of Tokyo2009

    • Author(s)
      竹内美緒
    • Organizer
      The 1st Korea-Japan Symposium on Microbial Ecology
    • Place of Presentation
      済州島,韓国
    • Year and Date
      2009-05-28
    • Related Report
      2009 Annual Research Report
  • [Presentation] Microbial world in subsurface of Tokyo2009

    • Author(s)
      Mio Takeuchi
    • Organizer
      1^<st> Korea-Japan Symposium on microbial ecology
    • Place of Presentation
      済州島
    • Year and Date
      2009-05-28
    • Related Report
      2008 Annual Research Report
  • [Presentation] Microbial world in the subsurface of Tokyo2009

    • Author(s)
      Takeuchi M.
    • Organizer
      1st Korea-Japan symposium
    • Place of Presentation
      Cheju island, Korea
    • Related Report
      2009 Final Research Report
  • [Presentation] Living microbial community (methanogens) in ancient marine sediments of Holocene in the Kanto Plain, Japan2008

    • Author(s)
      Mio Takeuchi, Hideyuki Tamaki, Susumu Tanabe, Mieko Uchiyama, Maki Sugihara, Manabu Takahashi, Hideyoshi Yoshioka
    • Organizer
      International Symposium on Subsurface Microbiology
    • Place of Presentation
      静岡
    • Year and Date
      2008-11-18
    • Related Report
      2008 Annual Research Report
  • [Presentation] 関東平野の沖積粘土層中におけるメタン生成2008

    • Author(s)
      竹内美緒, 玉木秀幸, 田邉晋, 内山美 恵子, 高橋学, 吉岡秀佳
    • Organizer
      アーキア研究会
    • Place of Presentation
      那覇, 沖縄
    • Related Report
      2009 Final Research Report
  • [Presentation] Living microbial community (methanogens) in ancient marine sediments of Holocene in the Kanto Plain2008

    • Author(s)
      M. Takeuchi, H. Tamaki, S. Tanabe, M. Uchiyama, M. Sugihara, M. Takahashi, H. Yoshioka
    • Organizer
      Japan, ISSM
    • Place of Presentation
      Shizuoka
    • Related Report
      2009 Final Research Report
  • [Presentation] Living methanogens in the Holocene mud2007

    • Author(s)
      M. Takeuchi, H, Tamaki, S, Tanabe, M, Uchiyama, M, Takahashi, H, Yoshioka
    • Organizer
      ISME-Asia. Matsuyama
    • Place of Presentation
      Ehime
    • Related Report
      2009 Final Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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