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Molecular phylogeographic studies on ranoid frogs: Correlation between Gondwana braking-up and anuran divergence

Research Project

Project/Area Number 19770064
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Biodiversity/Systematics
Research InstitutionHiroshima University

Principal Investigator

KURABAYASHI Atsushi  Hiroshima University, 大学院・理学研究科, 助教 (00327701)

Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥600,000)
Fiscal Year 2009: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2008: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2007: ¥1,300,000 (Direct Cost: ¥1,300,000)
Keywordsゴンドワナ大陸 / 分子系統地理 / 分岐年代解析 / アカガエル科 / ヒメアマガエル科 / ミトゲノム / 遺伝子配置 / 分子進化 / 無尾両生類 / 系統地理 / アカガエル上科 / マダガスカルガエル科 / ミトコンドリアゲノム / 協調進化 / 相同組換え / 大陸移動
Research Abstract

To assess possible correlations between Gondowana braking-up and anuran divergence, mitochondrial (mt) genomes and nuclear genes were analyzed. The main results are the followings. 1) PCR primers that can amplify the whole mt genome of wide frog taxa were designed. 2) It was suggested that the amino acid data of mt genes should be used in divergence analyses for frog taxa. 3) An Asian microhylid shows close relationship with the Australian group, suggesting that the branching pattern of this taxon could not match the continent vicariance process.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (19 results)

All 2010 2009 2008 2007 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results) Presentation (9 results) Remarks (2 results)

  • [Journal Article] Complete mitochondrial DNA sequence of the endangered frog Odorrana ishikawae (family Ranidae) and unexpected diversity of mt gene arrangement in ranids2010

    • Author(s)
      倉林敦、吉川夏彦、佐藤直樹、林陽子、大海昌平、藤井保、住田正幸
    • Journal Title

      Mol. Phylogenet. Evol 56巻

      Pages: 543-553

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Complete mitochondrial DNA sequence of the endangered frog Odorrana ishikawae (family Ranidae) and unexpected diversity of mt gene arrangements in ranids2010

    • Author(s)
      倉林敦, (他6名)
    • Journal Title

      Molecular Phylogenetics and Evolution (印刷中)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] PCR Primers for the neobatrachian mitochondrial genome2009

    • Author(s)
      倉林敦、住田正幸
    • Journal Title

      Current Herpetology 28巻

      Pages: 1-11

    • NAID

      130000122967

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] PCR Primers for the Neobatrachian Mitochondrial Genome2009

    • Author(s)
      倉林敦, (他1名)
    • Journal Title

      Current Herpetology 28

      Pages: 1-11

    • NAID

      130000122967

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phylogeny, recombination, and mechanisms of stepwise mitochondrial genome reorganization in mantellid frogs from Madagascar2008

    • Author(s)
      倉林敦、住田正幸、米川博道、Frank Glaw、Miguel Vences、長谷川政美
    • Journal Title

      Mol. Biol Evol 25巻

      Pages: 847-891

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] anurans: A case study of divergence time estimation using different data and calibration settings2008

    • Author(s)
      井川武、倉林敦、臼杵知佐子、藤井保、住田正幸
    • Journal Title

      Gene 407巻

      Pages: 116-129

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phylogeny, recombination, and mechanisms of stepwise mitochondrial genome reorganization in mantellid frogs from Madagascar2008

    • Author(s)
      倉林敦
    • Journal Title

      Molecular Biology and Evolution 25

      Pages: 874-891

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete mitochondrial genomes of three neobatrachian anurans:A case study of divergence time estimation using different data and calibration settings2008

    • Author(s)
      井川 武
    • Journal Title

      Gene 407

      Pages: 116-129

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] 無尾両生類の系統学の現在:高次系統・系統地理・DNAバーコーディング・ミトゲノムの進化2009

    • Author(s)
      倉林敦
    • Organizer
      第11回日本進化学会大会(ワークショップ・脊椎動物の高次系統と分子進化)
    • Place of Presentation
      札幌市
    • Year and Date
      2009-09-03
    • Related Report
      2009 Annual Research Report
  • [Presentation] 動物ミトコンドリアゲノムの分子進化メカニズム:マダガスカルガエル科で観察された大規模なゲノム再編成に基づく新たなモデルの提唱2009

    • Author(s)
      倉林敦, (他5名)
    • Organizer
      第11回日本進化学会大会(一般発表)
    • Place of Presentation
      札幌市
    • Year and Date
      2009-09-03
    • Related Report
      2009 Annual Research Report
  • [Presentation] 無尾両生類の系統学の現在:高次系統・系統地理・DNAバーコーディング・ミトゲノムの進化2009

    • Author(s)
      倉林敦
    • Organizer
      第11回日本進化学会(ワークショップ・脊椎動物の高次系統と分子進化)
    • Place of Presentation
      札幌市
    • Related Report
      2009 Final Research Report
  • [Presentation] 動物ミトゲノムの分子進化メカニズム:マダガスカルガエル科で観察された大規模なゲノム再編成に基づく新たなモデルの提唱2009

    • Author(s)
      倉林敦, (他5名)
    • Organizer
      第11回日本進化学会
    • Place of Presentation
      札幌市(一般発表)
    • Related Report
      2009 Final Research Report
  • [Presentation] Primers for neobatrachian mtDNAs, mt genomic structures in afrobatrachians, and ranoid phylogeny2008

    • Author(s)
      倉林敦、住田正幸
    • Organizer
      6th World Congress of Herpetology
    • Place of Presentation
      マナウス、ブラジル
    • Related Report
      2009 Final Research Report
  • [Presentation] Primers for Neobatrachian mtDNAs, mt Genomic Structures in Afrobarachians, and Ranoid Phylogeny2008

    • Author(s)
      倉林敦
    • Organizer
      6^<th> World Congress of Herpetology
    • Place of Presentation
      ブラジル・マナウス
    • Related Report
      2008 Annual Research Report
  • [Presentation] Primers for neobatrachian frog mtDNA and unique mt genomic structures found in arthroleptoid families2007

    • Author(s)
      倉林敦、住田正幸
    • Organizer
      Asia-Africa Evolutionary Meeting
    • Place of Presentation
      千葉
    • Related Report
      2009 Final Research Report
  • [Presentation] Complete mitochondrial genomes of three neobatrachian anurans: A case study of divergence time estimation using different data and calibration settings2007

    • Author(s)
      井川武、倉林敦、臼杵知佐子、藤井保、住田正幸
    • Organizer
      Asia-Africa Evolutionary Meeting
    • Place of Presentation
      千葉
    • Related Report
      2009 Final Research Report
  • [Presentation] Primers for neobatrachian frog mtDNAs and unique mt genomic structures found in arthroleptoid families2007

    • Author(s)
      倉林 敦
    • Organizer
      Asia-Africa Evolution Meeting
    • Place of Presentation
      生命の森リゾート千葉県
    • Related Report
      2007 Annual Research Report
  • [Remarks] ホームページ等

    • URL

      http://home.hiroshima-u.ac.jp/~amphibia/sumida/

    • Related Report
      2009 Final Research Report
  • [Remarks]

    • URL

      http://home.hiroshima-u.ac.jp/~amphibia/sumida/sb.cgi?cid=4

    • Related Report
      2009 Annual Research Report

URL: 

Published: 2007-04-01   Modified: 2016-04-21  

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