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Structural analysis of the quality control mechanism of glycol proteins by SCF Fbs ubiquitin ligase.

Research Project

Project/Area Number 19770080
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research InstitutionNagoya City University (2008-2009)
Nagoya University (2007)

Principal Investigator

MIZUSHIMA Tsunehiro  Nagoya City University, 大学院・薬学研究科, 准教授 (90362269)

Project Period (FY) 2007 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥3,870,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥570,000)
Fiscal Year 2009: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2008: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2007: ¥1,400,000 (Direct Cost: ¥1,400,000)
Keywords分子認識 / ユビキチン / 糖鎖 / SCFユビキチンリガーゼ / 蛋白質分解 / 品質管管理 / 品質管理
Research Abstract

The ubiquitin ligase complex SCF^<Fbs1>, which contributes to the ubiquitination of glycoproteins, is involved in the endoplasmic reticulum-associated degradation (ERAD) pathway. To elucidate the structural basis of SCF^<Fbs1> function, we determined the crystal structures of the Skp1-Fbs1 complex, the sugar binding domain (SBD) of the Fbs1-RNaseB complex and Skp1-Fbg3 complex at 2.4, 2.7 and 2.6 A resolutions, respectively. The structure of the Skp1-Fbs1 complex illustrated the SCF^<Fbs1> ubiquitin ligase model.

Report

(4 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (32 results)

All 2010 2009 2008 2007

All Journal Article (18 results) (of which Peer Reviewed: 17 results) Presentation (11 results) Book (3 results)

  • [Journal Article] Crystal Structure of Yeast Rpn14, a Chaperone of the 19S Regulatory Particle of the Proteasome.2010

    • Author(s)
      Kim S, Saeki Y, Fukunaga K, Suzuki A, Takagi K, Yamane T, Tanaka K, Mizushima T, Kato
    • Journal Title

      J. Biol. Chem. (印刷中)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for the cooperative interplay between the two causative gene products of combined factor V and factor VIII deficiency2010

    • Author(s)
      Nishio M, Kamiya Y, Mizushima T, Wakatsuki S, Sasakawa H, Yamamoto K, Uchiyama S, Noda M, McKay AR, Fukui K, Hauri HP, Kato K
    • Journal Title

      Proc Natl Acad Sci U S A. 107

      Pages: 4034-4039

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray characterization of the Skp1-Fbg3 complex.2010

    • Author(s)
      Kumanomidou T, Nakagawa T, Mizushima T, Suzuki A, Tokunaga F, Iwai K, Yoshida Y, Tanaka K, Yamane T
    • Journal Title

      Acta Crystallographica Section F 66

      Pages: 95-98

    • Related Report
      2009 Annual Research Report 2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for the cooperative interplay between the two causative gene products of combined factor V and factor VIII deficiency2010

    • Author(s)
      Nishio M, Kamiya Y, Mizushima T, Wakatsuki S, Sasakawa H, Yamamoto K, Uchiyama S, Noda M, McKay AR, Fukui K, Hauri HP, Kato K
    • Journal Title

      Proc Natl Acad Sci USA. 107

      Pages: 4034-4039

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal Structure of Yeast Rpn14, a Chaperone of the 19S Regulatory Particle of the Proteasome.2010

    • Author(s)
      Kim S, Saeki Y, Fukunaga K, Suzuki A, Takagi K, Yamane T, Tanaka K, Mizushima T, Kato K
    • Journal Title

      J.Biol.Chem. (印刷中)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the deubiquitinating enzyme UCH37 (human UCH-L5) catalytic domain.2009

    • Author(s)
      Nishio K, Kim SW, Kawai K, Mizushima T, Yamane T, Hamazaki J, Murata S, Tanaka K, Morimoto
    • Journal Title

      Biochem Biophys Res Commun. 390

      Pages: 855-860

    • Related Report
      2009 Annual Research Report 2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] 出芽酵母20Sプロテアソーム形成に関わるシャペロン複合体Dmp1/Dmp2の立体構造解析2008

    • Author(s)
      八代田英樹、水島恒裕
    • Journal Title

      細胞工学 27

      Pages: 474-475

    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Journal Article] The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsiloncaprolactam racemase from Achromobacter obae.2008

    • Author(s)
      Okazaki S, Suzuki A, Mizushima T, Kawano T, Komeda H, Asano Y, Yamane T
    • Journal Title

      Biochemistry 48

      Pages: 941-950

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for sorting mechanism of p62 in selective autophagy2008

    • Author(s)
      Ichimura Y, Kumanomidou T, Sou Y, Mizushima T, Ezaki, J, Ueno T, Kominami E, Yamane T, Tanaka K, Komatsu M
    • Journal Title

      J. Biol. Chem 283

      Pages: 22847-22857

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structure of D-amino-acid amidase complexed with L-phenylalanine with L-phenylalanine amide: insight into D-stereospecificity of D-amino-acid amidase from Ochrobacterum anthropi SV32008

    • Author(s)
      Okazaki S, Suzuki A, Mizushima T, Komeda H, Asano Y, Yamane T
    • Journal Title

      Acta Cryst. D 64

      Pages: 331-334

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes2008

    • Author(s)
      Yashiroda H, Mizushima T, Okamoto K, Kameyama T, Hayashi H, Kishimoto T, Niwa S, Kasahara M, Kurimoto E, Sakata E, Takagi K, Suzuki A, Hirano Y, Murata S, Kato K, Yamane T, Tanaka K
    • Journal Title

      Nat Struct Mol Biol. 15

      Pages: 228-236

    • Related Report
      2009 Final Research Report 2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of Damino-acid amidase complexed with Lphenylalanine with Lphenylalanine amide : insight into Dstereospecificity of D-amino-acid amidase from Ochrobacterum anthropi SV32008

    • Author(s)
      Okazaki S, Suzuki A, Mizushima T, Komeda H, Asano Y, Yamane T
    • Journal Title

      Acta Cryst. D 64

      Pages: 331-334

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for sorting mechanism of p62 in selective autophagy2008

    • Author(s)
      Ichimura Y, Kumanomidou T, Sou Y, Mizushima, T, Ezaki, J, Ueno T, Kominami E, Yamane T, Tanaka K, Komatsu M
    • Journal Title

      J. Biol. Chem 283

      Pages: 22847-22857

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The novel structure of a pyridoxal 5'phosphatedependent fold-type Iracemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae2008

    • Author(s)
      Okazaki S, Suzuki A, Mizushima T, Kawano T, Komeda H, Asano Y, Yamane T
    • Journal Title

      Biochemistry 48

      Pages: 941-950

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of Ufc1, the Ufm1-conjugating enzyme2007

    • Author(s)
      Mizushima T, Tatsumi K, Ozakai Y, Kawakami T, Suzuki A, Ogasahara K, Komatsu M, Kominami E, Tanaka K, Yamane T
    • Journal Title

      Biochem Biophys Res Commun 362

      Pages: 1079-1084

    • Related Report
      2009 Final Research Report 2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase.2007

    • Author(s)
      Mizushima T, Yoshida Y, Kumanomidou T, Hasegawa Y, Suzuki A, Yamane T, Tanaka K
    • Journal Title

      Proc Natl Acad Sci U S A. 104

      Pages: 5777-5781

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structures and physiological roles of 13 integral lipids of bovine heart cytochrome c oxidase.2007

    • Author(s)
      Shinzawa-Itoh K, Aoyama H, Muramoto K, Terada H, Kurauchi T, Tadehara Y, Yamasaki A, Sugimura T, Kurono S, Tsujimoto K, Mizushima T, Yamashita E, Tsukihara T, Yoshikawa S
    • Journal Title

      EMBO Journal 26

      Pages: 17131-1725

    • NAID

      120000861649

    • Related Report
      2009 Final Research Report 2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for the selection of glycosylated substrates by SCF^<Fbsl> ubiquitin ligase.2007

    • Author(s)
      Mizushima T, Yoshida Y, Kumanomidou T, Hasegawa Y, Suzuki A, Yamane T, Tanaka K
    • Journal Title

      Proc Natl Acad Sci U S A. 104

      Pages: 5777-5781

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] ユビキチンリガーゼによる糖タンパク質品質管理における糖鎖認識機構の解析2009

    • Author(s)
      水島恒裕、熊埜御堂太一、鈴木淳巨、山根隆、加藤晃一
    • Organizer
      糖鎖科学名古屋拠点第7回「若手の力」フォーラムおよび拠点共同研究報告会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-09-30
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] 鎖認識ユビキチンリガーゼFbsファミリーの構造と反応機構2009

    • Author(s)
      水島恒裕
    • Organizer
      第4回プロテオミクス・構造生物学講演会
    • Place of Presentation
      岡崎
    • Year and Date
      2009-01-30
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] プロテアソーム制御因子複合体形成シャペロンのX線結晶構造解析2009

    • Author(s)
      水島恒裕、金相佑、佐伯泰、田中啓二、加藤晃一
    • Organizer
      特定領域研究 超分子構造第6回公開シンポジウム
    • Place of Presentation
      大阪
    • Related Report
      2009 Final Research Report
  • [Presentation] プロテアソーム制御因子複合体形成シャペロンのX線結晶構造解析2009

    • Author(s)
      水島恒裕、金相佑、佐伯泰、田中啓二、加藤晃一
    • Organizer
      特定領域研究 超分子構造 第6回公開シンポジウム
    • Place of Presentation
      大阪
    • Related Report
      2009 Annual Research Report
  • [Presentation] STRUCTURE BASIS FOR RECOGNITION OF GLYCOSYLATED SUBSTRATES BY SCFFbs1 UBIQUITIN LIGASE2008

    • Author(s)
      Mizushima T., Yoshida Y., Kumanomidou T., Yamaguchi Y., Yamane T., Tanaka K., Kato K.
    • Organizer
      ZOMES V
    • Place of Presentation
      Yokohama, Japan
    • Year and Date
      2008-11-13
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] X-ray Structure of the Skp1-Fbs1 glycoprotein complex2008

    • Author(s)
      Mizushima T., Yoshida Y., Kumanomidou T., Hasegawa Y., Suzuki A., Yamane T., Tanaka K.
    • Organizer
      FEBS Congress & IUBMB Conference
    • Place of Presentation
      Athens, Greece
    • Year and Date
      2008-06-30
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] プロテアソームシャペロンDmp1-Dmp2複合体による20Sプロテアソーム分子集合機構2008

    • Author(s)
      水島恒裕、八代田英樹、田中啓二
    • Organizer
      日本蛋白質科学会
    • Place of Presentation
      東京
    • Year and Date
      2008-06-12
    • Related Report
      2009 Final Research Report
  • [Presentation] プロテアソームシャペロンDmp1-Dmp2複合体による20Sプロテァソーム分子集合機構2008

    • Author(s)
      水島恒裕、八代田英樹、田中啓二
    • Organizer
      日本蛋白質科学会
    • Place of Presentation
      東京
    • Year and Date
      2008-06-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] SCFFbs1ユビキチンリガーゼによる糖蛋白の選択的認識機構2007

    • Author(s)
      水島恒裕、吉田雪子、熊埜御堂太一、田中啓二、山根隆
    • Organizer
      日本蛋白質科学会
    • Place of Presentation
      仙台
    • Year and Date
      2007-05-26
    • Related Report
      2009 Final Research Report
  • [Presentation] SCF^<Fbs1>ユビキチンリガーゼによる糖蛋白の選択的認識機構2007

    • Author(s)
      水島恒裕、吉田雪子、熊埜御堂太一、田中啓二、山根隆
    • Organizer
      日本蛋白質科学会
    • Place of Presentation
      仙台
    • Year and Date
      2007-05-26
    • Related Report
      2007 Annual Research Report
  • [Presentation] X-ray Structure of the Skp1-Fbs1 glycoprotein complex2007

    • Author(s)
      Mizushima T, Yoshida Y, Kumanomidou T, Hasegawa Y, Suzuki A, Yamane T, Tanaka K
    • Organizer
      ASCA2007
    • Place of Presentation
      Taipei, Taiwan
    • Related Report
      2009 Final Research Report 2007 Annual Research Report
  • [Book] 蛋白質核酸酵素融合発展する構造生物学とケミカルバイオロジーの最前線2009

    • Author(s)
      水島恒裕、田中啓二
    • Total Pages
      1716
    • Publisher
      共立出版
    • Related Report
      2009 Final Research Report
  • [Book] 実験医学増刊号タンパク質の分解機構(SCFFbs1の構造と機能分担執筆)2008

    • Author(s)
      水島恒裕、吉田雪子
    • Total Pages
      233
    • Publisher
      羊土社
    • Related Report
      2009 Final Research Report
  • [Book] 実験医学増刊号 タンパク質の分解機構(SCF^<Fbs1>の構造と機能 分担執筆)2008

    • Author(s)
      水島恒裕、吉田雪子
    • Publisher
      羊土社
    • Related Report
      2007 Annual Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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