• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Rapid pattern recognition of OncomiR by DNA computation

Research Project

Project/Area Number 19H00901
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Review Section Medium-sized Section 34:Inorganic/coordination chemistry, analytical chemistry, and related fields
Research InstitutionTokyo University of Agriculture and Technology

Principal Investigator

Kawano Ryuji  東京農工大学, 工学(系)研究科(研究院), 教授 (90401702)

Co-Investigator(Kenkyū-buntansha) 鈴木 宏明  中央大学, 理工学部, 教授 (20372427)
Project Period (FY) 2019-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥45,630,000 (Direct Cost: ¥35,100,000、Indirect Cost: ¥10,530,000)
Fiscal Year 2022: ¥9,230,000 (Direct Cost: ¥7,100,000、Indirect Cost: ¥2,130,000)
Fiscal Year 2021: ¥8,840,000 (Direct Cost: ¥6,800,000、Indirect Cost: ¥2,040,000)
Fiscal Year 2020: ¥11,050,000 (Direct Cost: ¥8,500,000、Indirect Cost: ¥2,550,000)
Fiscal Year 2019: ¥16,510,000 (Direct Cost: ¥12,700,000、Indirect Cost: ¥3,810,000)
KeywordsDNAコンピューティング / microRNA / ナノポア / リキッドバイオプシー / ナノポア計測 / マイクロ流体技術 / リポソーム / コアセルベート / マイクロRNA / マイクロデバイス / がん診断 / 一分子計測 / マイクロ流体 / エクソソーム
Outline of Research at the Start

本研究ではDNAコンピューティング技術とナノポア計測によるラベルフリーDNA分子検出法を組み合わせることにより、早期がん診断マーカーとして期待されるmicroRNA(miRNA)群のがんパターン診断法の構築をめざす。

Outline of Final Research Achievements

In this project, we aimed to construct a cancer pattern diagnostic method for microRNAs (miRNAs), which are expected to be used as early-stage cancer diagnostic markers, by combining DNA computing technology and a label-free DNA molecule detection method using nanopore measurement. In this study, we found that the five miRNA pattern recognition method, which is up-regulated in cholangiocarcinoma, can be applied to blood samples from actual cancer patients, and we were able to detect miRNAs in the ultra-low concentration range (~fM), which had been impossible to measure using nanopore measurement. We also developed an extraction technique using liquid-liquid phase separation. These results have been published in peer-reviewed journals including JACS Au, and at several domestic and international conferences.

Academic Significance and Societal Importance of the Research Achievements

本研究では、DNAコンピューティングの並列情報処理を利用し、ナノポア計測と組合すことで、腫瘍由来miRNAのパターン診断法を開発した。実際に患者からの実検体からの識別にも成功し、現在病院、動物病院と共同研究で、ヒトの胃癌、口腔扁平上皮癌、イヌの各種簡易・安価なリキッドバイオプシー法として実用化を進めている。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Comments on the Screening Results   Annual Research Report
  • Research Products

    (55 results)

All 2023 2022 2021 2020 2019 Other

All Int'l Joint Research (3 results) Journal Article (21 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 21 results,  Open Access: 4 results) Presentation (23 results) (of which Int'l Joint Research: 17 results,  Invited: 11 results) Book (4 results) Remarks (2 results) Patent(Industrial Property Rights) (2 results)

  • [Int'l Joint Research] Radboud University(オランダ)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] University of Rome Tor Vergata(イタリア)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] University of Cincinati(米国)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Ultra-low concentration detection of DNA without its amplification using a biological nanopore2023

    • Author(s)
      Takeuchi Nanami、Kawano Ryuji
    • Journal Title

      Biophysical Journal

      Volume: 122 Issue: 3 Pages: 287a-287a

    • DOI

      10.1016/j.bpj.2022.11.1631

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MicroRNA Detection at Femtomolar Concentrations with Isothermal Amplification and a Biological Nanopore2023

    • Author(s)
      Takiguchi Sotaro、Kawano Ryuji
    • Journal Title

      Methods in Molecular Biology

      Volume: 1 Pages: 67-74

    • DOI

      10.1007/978-1-0716-2982-6_5

    • ISBN
      9781071629819, 9781071629826
    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] New Sensing Technologies: Microtas/NEMS/MEMS2023

    • Author(s)
      Yasuga Hiroki、Shoji Kan、Koiwai Keiichiro、Kawano Ryuji
    • Journal Title

      Encyclopedia of Sensors and Biosensors

      Volume: 1 Pages: 526-540

    • DOI

      10.1016/b978-0-12-822548-6.00046-7

    • ISBN
      9780128225493
    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pattern Recognition of microRNA Expression in Body Fluids Using Nanopore Decoding at Subfemtomolar Concentrations2022

    • Author(s)
      Takeuchi Nanami、Hiratani Moe、Kawano Ryuji
    • Journal Title

      JACS Au

      Volume: 2 Issue: 8 Pages: 1829-1838

    • DOI

      10.1021/jacsau.2c00117

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Endocytosis of Coacervates into Liposomes2022

    • Author(s)
      Lu Tiemei、Liese Susanne、Schoenmakers Ludo、Weber Christoph A.、Suzuki Hiroaki、Huck Wilhelm T. S.、Spruijt Evan
    • Journal Title

      Journal of the American Chemical Society

      Volume: 144 Issue: 30 Pages: 13451-13455

    • DOI

      10.1021/jacs.2c04096

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ナノポア計測によるDNA演算情報の復号化2022

    • Author(s)
      滝口創太郎、川野竜司
    • Journal Title

      高分子学会誌

      Volume: 71 Pages: 534-535

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 生体ナノポアを用いた核酸検出とDNA演算技術との融合による診断応用2022

    • Author(s)
      滝口創太郎、竹内七海、川野竜司
    • Journal Title

      応用物理学会M&BE分科会誌

      Volume: 33

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] De novo design of a nanopore for single-molecule detection that incorporates a β-hairpin peptide2021

    • Author(s)
      Shimizu Keisuke、Mijiddorj Batsaikhan、Usami Masataka、Mizoguchi Ikuro、Yoshida Shuhei、Akayama Shiori、Hamada Yoshio、Ohyama Akifumi、Usui Kenji、Kawamura Izuru、Kawano Ryuji
    • Journal Title

      Nature Nanotechnology

      Volume: - Issue: 1 Pages: 67-75

    • DOI

      10.1038/s41565-021-01008-w

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Single polypeptide detection using a translocon EXP2 nanopore2021

    • Author(s)
      Miyagi Mitsuki、Takiguchi Sotaro、Hakamada Kazuaki、Yohda Masafumi、Kawano Ryuji
    • Journal Title

      PROTEOMICS

      Volume: 22 Issue: 5-6 Pages: 2100070-2100070

    • DOI

      10.1002/pmic.202100070

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] “Plug-and-Play Microfluidic Production of Monodisperse Giant Unilamellar Vesicles Using Droplet Transfer across Water-Oil Interface”2021

    • Author(s)
      R. Ushiyama, K. Koiwai, H. Suzuki
    • Journal Title

      Sens. Act. B: Chemical

      Volume: 355 Pages: 131281-131281

    • DOI

      10.1016/j.snb.2021.131281

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] “Sizing of Giant Unilamellar Vesicles Using a Metal Mesh with a High Opening Ratio”2021

    • Author(s)
      K. Shinohara, T. Okita, M. Tsugane, T. Kondo, H. Suzuki
    • Journal Title

      Chem. Phys. Lipids

      Volume: 241 Pages: 105148-105148

    • DOI

      10.1016/j.chemphyslip.2021.105148

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Recognition of Single‐Point Mutation Using a Biological Nanopore2020

    • Author(s)
      Liu Ping、Kawano Ryuji
    • Journal Title

      Small Methods

      Volume: 4 Issue: 11 Pages: 2000101-2000101

    • DOI

      10.1002/smtd.202000101

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Recent Advances in Liposome-Based Molecular Robots2020

    • Author(s)
      Shoji Kan、Kawano Ryuji
    • Journal Title

      Micromachines

      Volume: 11 Issue: 9 Pages: 788-788

    • DOI

      10.3390/mi11090788

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analytical Model for Particle Capture in Nanopores Elucidates Competition among Electrophoresis, Electroosmosis, and Dielectrophoresis2020

    • Author(s)
      Chinappi Mauro、Yamaji Misa、Kawano Ryuji、Cecconi Fabio
    • Journal Title

      ACS Nano

      Volume: 14 Issue: 11 Pages: 15816-15828

    • DOI

      10.1021/acsnano.0c06981

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Elucidating the Membrane Dynamics and Encapsulation Mechanism of Large DNA Molecules Under Molecular Crowding Conditions Using Giant Unilamellar Vesicles2020

    • Author(s)
      Tsugane Mamiko、Suzuki Hiroaki
    • Journal Title

      ACS Synthetic Biology

      Volume: 9 Issue: 10 Pages: 2819-2827

    • DOI

      10.1021/acssynbio.0c00360

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deformation Dynamics of Giant Unilamellar Vesicles in the Large Surface-to-Volume Ratio Regime: The Emergence of Neuron-like Morphology2020

    • Author(s)
      Koseki Kaoru、Suzuki Hiroaki
    • Journal Title

      Langmuir

      Volume: 36 Issue: 22 Pages: 6238-6244

    • DOI

      10.1021/acs.langmuir.0c00872

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biological Nanopore Probe: Probing of Viscous Solutions in a Confined Nanospace2020

    • Author(s)
      Masaki Matsushita, Kan Shoji, Natsumi Takai, Ryuji Kawano
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 124 Issue: 12 Pages: 2410-2416

    • DOI

      10.1021/acs.jpcb.9b11096

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A System on Artificial Cell Membrane: from Information Science to Biomedical Applications2019

    • Author(s)
      Takeuchi Nanami、Izumi Kayano、Shoji Kan、Kawano Ryuji
    • Journal Title

      MEMBRANE

      Volume: 44 Issue: 5 Pages: 239-246

    • DOI

      10.5360/membrane.44.239

    • NAID

      130007724560

    • ISSN
      0385-1036, 1884-6440
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Osmotic-engine-driven liposomes in microfluidic channels2019

    • Author(s)
      Kan Shoji, Ryuji Kawano
    • Journal Title

      Lab on a Chip

      Volume: 19 Issue: 20 Pages: 3472-3480

    • DOI

      10.1039/c9lc00788a

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] NANOPORE DECODING FOR MICRORNA PATTERN OF CANCER WITH DNA COMPUTATION2019

    • Author(s)
      Nanami Takeuchi, Moe Hiratani, Asuka Tada, and Ryuji Kawano
    • Journal Title

      Proceedings of MicroTAS

      Volume: 1 Pages: 186-187

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] SPECIFIC DETECTION OF POINT-MUTATION-POSITION USING BIOLOGICAL NANOPORE2019

    • Author(s)
      Ping Liu, Keisuke Shimizu, and Ryuji Kawano
    • Journal Title

      Proceedings of MicroTAS

      Volume: 1 Pages: 1692-1693

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Presentation] Ultra-low concentration detection of DNA without its amplification using a biological nanopore2023

    • Author(s)
      Takeuchi Nanami, Kawano Ryuji
    • Organizer
      BPS2023
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ナノポアリキッドバイオプシー:血中由来短鎖核酸の一分子計測2023

    • Author(s)
      川野竜司
    • Organizer
      第7回 Liquid Biopsy 研究会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Pattern Recognition of microRNA Expression in Body Fluids Using Nanopore Decoding at Subfemtomolar2023

    • Author(s)
      Takeuchi Nanami
    • Organizer
      Nanopore Weekly Meeting
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 分子演算システムによる複数miRNAのパターン認識2022

    • Author(s)
      川野竜司
    • Organizer
      第42回キャピラリー電気泳動シンポジウム
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Femtomolar MicroRNA Detection by Diagnostic DNA System and Biological Nanopore2022

    • Author(s)
      Takeuchi Nanami, Kawano Ryuji
    • Organizer
      uTAS2022
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Direct Detection of DNA Methylation and Determination Intermediates using Biological Nanopore2022

    • Author(s)
      Liu Ping and Ryuji Kawano
    • Organizer
      uTAS2022
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Optimization of the cell-free protein synthesis in monodisperse liposomes produced by microfluidics2022

    • Author(s)
      Ryota Ushiyama, Reiko Sato, Mamiko Tsugane, Tomoaki Matsuura, Hiroaki Suzuki
    • Organizer
      uTAS2022
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Artificial cell studies in microfluidics2022

    • Author(s)
      Hiroaki Suzuki
    • Organizer
      The 10th Asia-Pacific Conference of Transducers and Micro-Nano Technology 2022 (APCOT 2022)
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Microfluidic technologies for artificial cell studies2022

    • Author(s)
      Hiroaki Suzuki
    • Organizer
      35th International Microprocesses and Nanotechnology Conference (MNC 2022)
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 分析化学へアプローチする人工細胞膜研究2021

    • Author(s)
      川野竜司
    • Organizer
      生物工学フォーラム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Femtomolar MicroRNA Detection by Diagnostic DNA System and Biological Nanopore2021

    • Author(s)
      Nanami Takeuchi and Ryuji Kawano
    • Organizer
      MicroTAS2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A plug-and-play microfluidic device for efficient generation of monodisperse giant unilamellar vesicles2021

    • Author(s)
      H. Suzuki, R. Ushiyama, K. Koiwai,
    • Organizer
      20th IUPAB Congress
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Monodispersion of Giant Unilamellar Vesicles Using a Metal Mesh Filter2021

    • Author(s)
      K. Shinohara, T. Okita, M. Tsugane, T. Kondo, H. Suzuki
    • Organizer
      MicroTAS2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Production of monodisperse giant unilamellar vesicles using a microfluidic channel2021

    • Author(s)
      R. Ushiyama, T. Matsuura, K. Koiwai, H. Suzuki
    • Organizer
      Pacifichem
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Size purification of giant unilamellar vesicles using the mesh filter with the high opening ratio2021

    • Author(s)
      K. Shinohara, T. Okita, M. Tsugane, H. Suzuki
    • Organizer
      Pacifichem
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nanopore decoding for DNA computing (Keynote lecture)2020

    • Author(s)
      Ryuji Kawano
    • Organizer
      Nanopore Electrochemistry Meeting (Online)
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Analysis of transmembrane peptides using a lipid bilayer system2020

    • Author(s)
      Ryuji Kawano
    • Organizer
      第58回 生物物理学会年会 (Online)
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] ボトムアップ配列設計ペプチドによるナノポアの構築2020

    • Author(s)
      川野竜司
    • Organizer
      第72回 日本生物工学会大会(Online)
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Nanopore decoding for microRNA pattern of cancer with DNA computation2019

    • Author(s)
      Nanami Takeuchi, Moe Hiratani, Asuka Tada, and Ryuji Kawano
    • Organizer
      The 23th International Conference on Miniaturized Systems for Chemistry and Life Sciences (uTAS 2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Specific detection of point-mutation-position using biological nanopore2019

    • Author(s)
      Ping Liu, Keisuke Shimizu, and Ryuji Kawano
    • Organizer
      The 23th International Conference on Miniaturized Systems for Chemistry and Life Sciences (uTAS 2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Construction of Artificial Cell-Membrane System Using Microfluidics2019

    • Author(s)
      Ryuji Kawano
    • Organizer
      Microfluidics & Organ-on-a-Chip Asia 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Ejection of large particulate materials from giant unilamellar vesicles2019

    • Author(s)
      S. Katsuta T. Okano, H. Suzuki
    • Organizer
      The 23th International Conference on Miniaturized Systems for Chemistry and Life Sciences (uTAS 2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Giant Liposome-based Dynamic Bioreactor2019

    • Author(s)
      H. Suzuki
    • Organizer
      Okinawa Colloids 2019
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Book] 疾患バイオマーカーとしてのマイクロRNAと診断応用2022

    • Author(s)
      落谷孝広、松﨑潤太郎
    • Total Pages
      276
    • Publisher
      シーエムシー出版
    • ISBN
      9784781316673
    • Related Report
      2022 Annual Research Report
  • [Book] Molecular Robotics An Introduction2022

    • Author(s)
      Satoshi Murata
    • Total Pages
      296
    • Publisher
      Springer Nature
    • ISBN
      9789811939877
    • Related Report
      2022 Annual Research Report
  • [Book] DNA‐ and RNA‐Based Computing Systems2021

    • Author(s)
      Hiroki Yasuga, Kan Shoji, Ryuji Kawano
    • Total Pages
      392
    • Publisher
      WILEY‐VCH GmbH
    • ISBN
      9783527347209
    • Related Report
      2021 Annual Research Report
  • [Book] Reference Module in Biomedical Sciences2021

    • Author(s)
      Hiroki Yasuga, Kan Shoji, Keiichiro Koiwai, Ryuji Kawano
    • Publisher
      Elsevier
    • Related Report
      2021 Annual Research Report
  • [Remarks] 東京農工大学 川野研究室

    • URL

      http://web.tuat.ac.jp/~rjkawano/index.html

    • Related Report
      2022 Annual Research Report 2019 Annual Research Report
  • [Remarks] 東京農工大学 川野研究室

    • URL

      http://web.tuat.ac.jp/~rjkawano/index.html

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
  • [Patent(Industrial Property Rights)] W/O/W液滴の製造方法,W/O/W液滴の製造装置及びW/O/W液滴2021

    • Inventor(s)
      鈴木宏明,牛山諒太
    • Industrial Property Rights Holder
      鈴木宏明,牛山諒太
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2021-075103
    • Filing Date
      2021
    • Related Report
      2021 Annual Research Report
  • [Patent(Industrial Property Rights)] 未定2020

    • Inventor(s)
      川野竜司、竹内七海
    • Industrial Property Rights Holder
      川野竜司、竹内七海
    • Industrial Property Rights Type
      特許
    • Filing Date
      2020
    • Related Report
      2019 Annual Research Report

URL: 

Published: 2019-04-18   Modified: 2024-01-30  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi