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Chemical biology on a bioactive substance regulating the hypoxia response signal

Research Project

Project/Area Number 19H02840
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 37020:Chemistry and chemical methodology of biomolecules-related
Research InstitutionKyoto University

Principal Investigator

Kakeya Hideaki  京都大学, 薬学研究科, 教授 (00270596)

Project Period (FY) 2019-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥17,290,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥3,990,000)
Fiscal Year 2021: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2020: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2019: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Keywordsケミカルバイオロジー / 低酸素誘導因子 / 抗がん剤 / 天然物化学 / 分子プローブ
Outline of Research at the Start

がん細胞の特徴として、細胞の不死化、浸潤・転移の活性化、増殖シグナルの持続、血管新生の誘導、細胞内エネルギー代謝異常などがあげられる。乳がん、腎がんなどの固形がん組織もこれらがん細胞特有の性質を有するものが多く、十分な酸素が供給されない低酸素状態に曝されている。低酸素ストレスに曝された細胞が適応応答するメカニズムの主役を担っているのが、転写因子の一つである低酸素誘導因子(hypoxia-inducible factors: HIFs)である。本研究課題では、研究代表者が見出した低酸素応答シグナルを制御する生物活性物質の構造活性相関研究や作用機序解析研究を中心に、ケミカルバイオロジー研究を行う。

Outline of Final Research Achievements

HIFs are promising molecular targets for cancer chemotherapy. Among HIFs family, HIF-2 promotes pVHL-deficient renal carcinoma. Thus, development of HIF-2 inhibitors is a promising therapeutic strategy for HIF-2α-driven tumors such as ccRCC (clear cell renal cell carcinoma). In this research, we found saccharothriolides (STLs), microbial metabolites produced by a rare actinomycete Saccharothrix sp., exhibited selective cytotoxic activity in VHL-deficient RCC4 cells via decrease of a protein level of HIF-2α. Next, to obtain further scarce derivatives of STLs, our original highly sensitive labeling probe was developed. The crude extract of the actinomycete was directly treated with the labeling reagent, enabling us to the detection of a new derivative preSTL-Z, whose chemical structure was confirmed by the first chemical synthesis of saccharothriolide-class macrolides. This total synthesis enabled us the structural elucidation and bioassay of STL-Z.

Academic Significance and Societal Importance of the Research Achievements

腫瘍血管に富んだ腎細胞がんにおいては、がん抑制遺伝子vhlに異常が認められ、VHLタンパク質の機能喪失によってHIF-2αが蓄積し、多くのがん関連標的遺伝子(血管内皮増殖因子VEGFなど)が活性化されている。したがって、見出したHIF-2の機能阻害物質は、腎細胞がんをはじめとして過剰なHIF-2シグナルに起因する各種疾病のメカニズム解析用ツール及び創薬シーズとして期待される。さらに、希少天然物を高感度に検出可能な検出プローブは、いままで存在量が極微量がゆえに見出されていない様々な天然資源における希少天然物の探索・同定に利用可能である。

Report

(4 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • Research Products

    (47 results)

All 2022 2021 2020 2019 Other

All Int'l Joint Research (8 results) Journal Article (16 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 16 results,  Open Access: 2 results) Presentation (16 results) (of which Int'l Joint Research: 7 results,  Invited: 11 results) Book (3 results) Remarks (3 results) Patent(Industrial Property Rights) (1 results)

  • [Int'l Joint Research] 浙江大学(中国)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] ジョンズホプキンス大学(カナダ)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] プリンストン大学(米国)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] 浙江大学(中国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] ジョンズホプキンス大学(米国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] トロント大学(カナダ)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] ジョンズホプキンス大学(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] トロント大学(カナダ)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Development and application of highly sensitive labeling reagents for amino acids2022

    • Author(s)
      Kuranaga, T., Kakeya, H.
    • Journal Title

      Methods in Enzymol.

      Volume: 665 Pages: 105-133

    • DOI

      10.1016/bs.mie.2021.11.004

    • ISBN
      9780323952675
    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Highly Sensitive Determination of Amino Acids by LC-MS under Neutral Conditions2021

    • Author(s)
      Morimoto, R., Matsumoto, T., Minote, M., Yanagisawa, M., Yamada, R., Kuranaga, T., Kakeya, H.
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 69 Issue: 3 Pages: 265-270

    • DOI

      10.1248/cpb.c20-00958

    • NAID

      130007993065

    • ISSN
      0009-2363, 1347-5223
    • Year and Date
      2021-03-01
    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design, synthesis, and target identification of new hypoxia-induced factor 1 (HIF-1) inhibitors containing 1-alkyl-1H-pyrazole-3-carboxamide moiety2021

    • Author(s)
      Sakai, M., Takahashi, N., Ikeda, H., Furutani, Y., Higuchi, S., Suzuki, T., Dohmae, N., Kobayashi, S., Harada, H., Kojima, S., Matsuura, T., Hattori, A., Kakeya, H.
    • Journal Title

      Bioorg. Med. Chem.

      Volume: - Pages: 116375-116375

    • DOI

      10.1016/j.bmc.2021.116375

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Retro-aza-Michael reaction of an o-aminophenol adduct in protic solvents inspired by natural products2021

    • Author(s)
      Takenaka, K., Kaneko, K., Takahashi, N., Nishimura, S., Kakeya, H.
    • Journal Title

      Bioorg. Med. Chem.

      Volume: - Pages: 116059-116059

    • DOI

      10.1016/j.bmc.2021.116059

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Targeting hypoxia-inducible factor 1 (HIF-1) signaling with natural products toward cancer chemotherapy.2021

    • Author(s)
      Ikeda, H., Kakeya, H.
    • Journal Title

      J. Antibiot.

      Volume: 74 Issue: 10 Pages: 687-695

    • DOI

      10.1038/s41429-021-00451-0

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Heterogenous chemosensitivity of organoid cell lines derived from small cell neuroendocrine carcinoma of the uterine cervix2021

    • Author(s)
      Tanaka, M., Kondo, J., Kaneko, K., Endo, H., Onuma, K., Coppo, R., Kamiura, S., Yoshino, K., Ueda, Y., Kakeya, H. Kimura, T., Inoue, M.
    • Journal Title

      Human Cell

      Volume: - Issue: 3 Pages: 889-900

    • DOI

      10.1007/s13577-021-00511-5

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Amycolapeptins A and B, cyclic nonadepsipeptides produced by combined-culture of Amicolatopsis sp. and Tsukamurella pulmonis2021

    • Author(s)
      Pan, C., Kuranaga, T., Cao, X., Suzuki, T., Dohmae, N., Shinzato, N., Onaka, H., Kakeya, H.
    • Journal Title

      J. Org. Chem.

      Volume: 86 Issue: 2 Pages: 1843-1849

    • DOI

      10.1021/acs.joc.0c02660

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Longicatenamides A-D, two diastereomeric pairs of cyclic hexapeptides produced by combined-culture of Streptomyces sp. KUSC_F05 and Tsukamurella pulmonis TP-B05962021

    • Author(s)
      Jiang, Y., Matsumoto, T., Kuranaga, T., Lu, S., Wang, W., Onaka, H., Kakeya, H.
    • Journal Title

      J. Antibiot.

      Volume: - Issue: 5 Pages: 307-316

    • DOI

      10.1038/s41429-020-00400-3

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Highly sensitive labeling reagents for scarce natural products2020

    • Author(s)
      Kuranaga, T., Minote, M., Morimoto, R., Pan, C., Ogawa, H., Kakeya, H
    • Journal Title

      ACS Chem. Biol.

      Volume: 15 Issue: 9 Pages: 2499-2506

    • DOI

      10.1021/acschembio.0c00517

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Curcumin beta-D-glucuronide (CMG) exhibits anti-tumor effects on oxaliplatin-resistant colon cancer with less toxicity.2020

    • Author(s)
      Ozawa-Umeta, H., Kishimoto, A., Imaizumi, A., Hashimoto, T., Kakeya, H., Kanai, M.
    • Journal Title

      Cancer Sci.

      Volume: 111 Issue: 5 Pages: 1785-1793

    • DOI

      10.1111/cas.14383

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Different localization of lysosomal-associated membrane protein 1 (LAMP1) in mammalian cultured cell lines2020

    • Author(s)
      Kosuke Baba, Sara Kuwada, Ayaka Nakao, Xuebing Li, Naoaki Okuda, Ai Nishida, Satoshi Mitsuda, Natsuki Fukuoka, Hideaki Kakeya, Takao Kataoka
    • Journal Title

      Histochemistry and Cell Biology

      Volume: 153 Issue: 4 Pages: 199-213

    • DOI

      10.1007/s00418-019-01842-z

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Total synthesis and antimicrobial activity of tumescenamide C and its derivatives.2020

    • Author(s)
      Takahashi, N., Kaneko, K., Kakeya, H.
    • Journal Title

      J. Org. Chem.

      Volume: 85 Issue: 6 Pages: 4530-4535

    • DOI

      10.1021/acs.joc.9b03516

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ubiquitin carboxyl‐terminal hydrolase L1 promotes hypoxia‐inducible factor 1‐dependent tumor cell malignancy in spheroid models2019

    • Author(s)
      Li Xuebing、Hattori Akira、Takahashi Senye、Goto Yoko、Harada Hiroshi、Kakeya Hideaki
    • Journal Title

      Cancer Science

      Volume: 111 Issue: 1 Pages: 239-252

    • DOI

      10.1111/cas.14236

    • NAID

      120006848248

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Total synthesis of verucopeptin, an inhibitor of hypoxia-inducible factor 1 (HIF-1).2019

    • Author(s)
      Takahashi, N., Hayashi, H., Poznaks, V., Kakeya, H.
    • Journal Title

      Chem. Commun.

      Volume: 55 Issue: 79 Pages: 11956-11959

    • DOI

      10.1039/c9cc06169j

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation, Structure Elucidation, and Conformational Regulation of Myropeptins, Lipopeptides from the Fungus Myrothecium roridum.2019

    • Author(s)
      Yoshimura, A., Nishimura, S.*, Suzuki, T., Hattori, A., Dohmae, N., Kato, T. & Kakeya, H.
    • Journal Title

      Org. Lett.

      Volume: 21 Issue: 18 Pages: 7524-7528

    • DOI

      10.1021/acs.orglett.9b02801

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chemical Interactions of Cryptic Actinomycete Metabolite 5‐Alkyl‐1,2,3,4‐tetrahydroquinolines through Aggregate Formation2019

    • Author(s)
      Sugiyama Ryosuke、Nakatani Takahiro、Nishimura Shinichi、Takenaka Kei、Ozaki Taro、Asamizu Shumpei、Onaka Hiroyasu、Kakeya Hideaki
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 58 Issue: 38 Pages: 13486-13491

    • DOI

      10.1002/anie.201905970

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Chemical communication research on microbes toward the development of novel antibiotics2022

    • Author(s)
      Kakeya, H.
    • Organizer
      Japan-the Netherlands Microbiology Symposium 2022
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Chemical communication research toward the development of novel antibiotics2021

    • Author(s)
      Kakeya, H.
    • Organizer
      PACIFICHEM2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Chemical communication research toward the development of new anticancer drugs2021

    • Author(s)
      Kakeya, H.
    • Organizer
      PACIFICHEM2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 放線菌由来ロンギカテナミドA-Dに関する研究:異属微生物の複合培養による生産、構造決定、生物活性、及び全合成2021

    • Author(s)
      松元拓海, Yulu Jiang, 倉永健史 Shun Lu, Weicheng Wang, 尾仲宏康, 掛谷秀昭
    • Organizer
      第63回天然有機化合物討論会
    • Related Report
      2021 Annual Research Report
  • [Presentation] がん幹細胞を標的とした抗がん剤シーズの探索研究2021

    • Author(s)
      池田拓慧, 川見美里, 井本正哉, 掛谷秀昭.
    • Organizer
      日本ケミカルバイオロジー学会 第15回年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] LC-MSを用いた中性条件下の好感度アミノ酸分析2021

    • Author(s)
      森本涼太, 松元拓海, 箕手万由里, 柳沢将行, 山田竜太郎, 倉永健史, 掛谷秀昭
    • Organizer
      創薬懇話会 2021
    • Related Report
      2021 Annual Research Report
  • [Presentation] ピラゾール骨格を有する新規低酸素誘導因子HIF-1阻害剤の開発研究2021

    • Author(s)
      酒井麻利奈, 高橋伸明, 古谷 裕, 鈴木健裕, 堂前 直, 小林清香, 服部 明, 原田 浩, 掛谷秀昭
    • Organizer
      日本薬学会第141年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 自然に学ぶ生理化学研究:分子プローブ開発と創薬2020

    • Author(s)
      掛谷秀昭
    • Organizer
      京都大学学際融合教育推進センター・生理化学研究ユニット第10回公開シンポジウム
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Discoveryof sulfur-containing cyclic lipopeptides thioamycolamides A-E, producedby the rare ctinomycete Amycolatopsis sp.2020

    • Author(s)
      Pan, C., Kuranaga, T., Liu, C., Lu, S., Shinzato, N., Kakeya, H
    • Organizer
      The 62nd Symposium on the Chemistry of Natural Products
    • Related Report
      2020 Annual Research Report
  • [Presentation] Continuing Fascination with Discovery Science: Phenotypic Screening to Chemical Biology.2020

    • Author(s)
      Kakeya, H.
    • Organizer
      Mona Symposium 2020: Natural Product Chemistry and Medicinal Chemistry.
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Chemical comunication research toward the development of useful chemical probes.2019

    • Author(s)
      Kakeya, H.
    • Organizer
      The 4th A3 Roundtable Meeting on Asia Chemical Probe Research
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Natural products-prompted chemical biology: Phenotypic screening and a new platform for target identification.2019

    • Author(s)
      Kakeya, H.
    • Organizer
      The 6th Tishler-Omura Sympoium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Highly sensitive labeling reagents inspired by a scarce marine natural product.2019

    • Author(s)
      Kuranaga, T., Kakeya, H.
    • Organizer
      10th Korea-Japan Chemical Biology Symposium.
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 有用生物活性リガンドの開発を志向した化学コミュニケーション研究2019

    • Author(s)
      掛谷秀昭
    • Organizer
      有機合成のニュートレンド2020(有機合成化学協会関西支部主催)
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 微生物間化学コミュニケーションの理解と有用生物活性リガンドの開発2019

    • Author(s)
      掛谷秀昭
    • Organizer
      新学術領域研究「化学コミュニケーションのフロンティア」・第6回公開シンポジウム.
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 微生物間化学コミュニケーションの利活用による新規有用生物活性リガンドの開発研究2019

    • Author(s)
      掛谷秀昭
    • Organizer
      第19回日本蛋白質科学会年会・第71回日本細胞生物学会 合同年次大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Book] くすり大図鑑2021

    • Author(s)
      掛谷秀昭(監修)
    • Total Pages
      206
    • Publisher
      ニュートンプレス社
    • ISBN
      9784315524802
    • Related Report
      2021 Annual Research Report
  • [Book] くすりの科学知識-今こそ知っておきたいくすりの効能、しくみ、正しい付き合い方-(増補 第3版)2021

    • Author(s)
      掛谷秀昭(監修)
    • Total Pages
      175
    • Publisher
      ニュートンプレス社
    • ISBN
      9784315524642
    • Related Report
      2021 Annual Research Report
  • [Book] くすりの科学知識:薬のしくみと、奥深き創薬の世界2019

    • Author(s)
      掛谷秀昭(監修)
    • Total Pages
      175
    • Publisher
      ニュートンプレス
    • ISBN
      9784315521894
    • Related Report
      2019 Annual Research Report
  • [Remarks] 京都大学大学院薬学研究科 創発医薬科学専攻 システムケモセラピー(制御分子学)分野

    • URL

      https://www.pharm.kyoto-u.ac.jp/sc-molsci/

    • Related Report
      2021 Annual Research Report
  • [Remarks] 京都大学大学院薬学研究科 医薬創成情報科学専攻 システムケモセラピー(制御分子学)分野

    • URL

      https://www.pharm.kyoto-u.ac.jp/sc-molsci/

    • Related Report
      2020 Annual Research Report
  • [Remarks] 京都大学大学院薬学研究科 医薬創成情報科学専攻 システムケモセラピー(制御分子学)分野

    • URL

      http://www.pharm.kyoto-u.ac.jp/sc-molsci/

    • Related Report
      2019 Annual Research Report
  • [Patent(Industrial Property Rights)] 含窒素複素環式化合物2020

    • Inventor(s)
      1)掛谷秀昭, 酒井麻利奈, 古谷 裕
    • Industrial Property Rights Holder
      1)掛谷秀昭, 酒井麻利奈, 古谷 裕
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2020-209649
    • Filing Date
      2020
    • Related Report
      2020 Annual Research Report

URL: 

Published: 2019-04-18   Modified: 2023-01-30  

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