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Structural basis of traslation regulation by dynamic interactions between the complexes

Research Project

Project/Area Number 19H03172
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 43020:Structural biochemistry-related
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Ito Takuhiro  国立研究開発法人理化学研究所, 生命機能科学研究センター, チームリーダー (70401164)

Project Period (FY) 2019-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥17,420,000 (Direct Cost: ¥13,400,000、Indirect Cost: ¥4,020,000)
Fiscal Year 2021: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2020: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2019: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Keywords翻訳 / 翻訳開始因子 / 統合的ストレス応答 / 電子顕微鏡 / 生体分子 / リボソーム
Outline of Research at the Start

本研究では、複雑で動的なヒトの翻訳制御機構のうち、【1】翻訳開始因子eIF2のリン酸化とeIF2のGEFであるeIF2Bによって制御される統合的ストレス応答機構、【2】早期終止リボソームとSMG1複合体、Upf複合体、Exon-junction complex(EJC)によって形成される超複合体によるナンセンス変異依存mRNA分解機構(NMD)の発動機構、の2つの機構を標的とする。通常の組み換えタンパク質を用いた複合体の再構成に加えて、再構成試験管内翻訳系を駆使してクライオ電子顕微鏡による立体構造解析を進め、生化学的・生物物理的な解析と併せてこれらの機構を明らかにすることを目指す。

Outline of Final Research Achievements

We determined two cryo-EM structures of the eIF2-eIF2B GEF-active productive complex and the phosphorylated eIF2 (eIF2-P)-eIF2B GEF-inactive nonproductive complex, and clarified the mechanism of eIF2 activation by eIF2B and eIF2B inactivation by eIF2-P. In addition, the mechanism of the action of ISRIB, a small molecule that suppresses ISR, was clarified. We also elucidated the mechanism of ISR suppression by Sandfly fever Sicilian virus NSs protein, which functions by binding to eIF2B.

Academic Significance and Societal Importance of the Research Achievements

本研究によりISR制御の核となるeIF2/eIF2-PとeIF2Bによるヌクレオチド交換活性制御の構造的機構が明らかとなった。さらには、これらを参照することによりISRIBやSFSV NSsによるeIF2Bの制御機構を立体構造の視点から明らかにした。今後、eIF2-PとeIF2Bの結合を制御することは神経変性疾患の新規治療法の開発につながると期待できる。

Report

(4 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • Research Products

    (21 results)

All 2021 2020 2019 Other

All Int'l Joint Research (4 results) Journal Article (6 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 6 results,  Open Access: 3 results) Presentation (9 results) (of which Int'l Joint Research: 2 results,  Invited: 4 results) Remarks (2 results)

  • [Int'l Joint Research] Justus-Liebig University(ドイツ)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] University of Cambridge(英国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Boston Univeristy(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] University of Cambridge(英国)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] eIF2B-capturing viral protein NSs suppresses the integrated stress response2021

    • Author(s)
      Kashiwagi Kazuhiro、Shichino Yuichi、Osaki Tatsuya、Sakamoto Ayako、Nishimoto Madoka、Takahashi Mari、Mito Mari、Weber Friedemann、Ikeuchi Yoshiho、Iwasaki Shintaro、Ito Takuhiro
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 7102-7102

    • DOI

      10.1038/s41467-021-27337-x

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B2021

    • Author(s)
      Zyryanova Alisa F.、Kashiwagi Kazuhiro、Rato Claudia、Harding Heather P.、Crespillo-Casado Ana、Perera Luke A.、Sakamoto Ayako、Nishimoto Madoka、Yonemochi Mayumi、Shirouzu Mikako、Ito Takuhiro、Ron David
    • Journal Title

      Molecular Cell

      Volume: 81 Issue: 1 Pages: 88-103

    • DOI

      10.1016/j.molcel.2020.10.031

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dual targeting of DDX3 and eIF4A by the translation inhibitor rocaglamide A2021

    • Author(s)
      Chen Mingming、Asanuma Miwako、Takahashi Mari、Shichino Yuichi、Mito Mari、Fujiwara Koichi、Saito Hironori、Floor Stephen N.、Ingolia Nicholas T.、Sodeoka Mikiko、Dodo Kosuke、Ito Takuhiro、Iwasaki Shintaro
    • Journal Title

      Cell Chemical Biology

      Volume: 28 Issue: 4 Pages: 475-486

    • DOI

      10.1016/j.chembiol.2020.11.008

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] eIF2B and the Integrated Stress Response: A Structural and Mechanistic View2020

    • Author(s)
      Marintchev Assen、Ito Takuhiro
    • Journal Title

      Biochemistry

      Volume: 59 Issue: 13 Pages: 1299-1308

    • DOI

      10.1021/acs.biochem.0c00132

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] HCV IRES captures an actively translating 80S ribosome2019

    • Author(s)
      Yokoyama Takeshi、Machida Kodai、Iwasaki Wakana、Shigeta Tomoaki、Nishimoto Madoka、Takahashi Mari、Sakamoto Ayako、Yonemochi Mayumi、Harada Yoshie、Shigematsu Hideki、Shirouzu Mikako、Tadakuma Hisashi、Imataka Hiroaki、Ito Takuhiro
    • Journal Title

      Molecular Cell

      Volume: 印刷中 Issue: 6 Pages: 1205-1214

    • DOI

      10.1016/j.molcel.2019.04.022

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural basis for eIF2B inhibition in integrated stress response2019

    • Author(s)
      Kashiwagi Kazuhiro、Yokoyama Takeshi、Nishimoto Madoka、Takahashi Mari、Sakamoto Ayako、Yonemochi Mayumi、Shirouzu Mikako、Ito Takuhiro
    • Journal Title

      Science

      Volume: 364 Issue: 6439 Pages: 495-499

    • DOI

      10.1126/science.aaw4104

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Presentation] eIF2B結合性ウイルスタンパク質NSsによる統合的ストレス応答抑制2021

    • Author(s)
      伊藤拓宏
    • Organizer
      第94回日本生化学会大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] eIF2Bに結合するウイルスタンパク質NSsは統合的ストレス応答を抑制する2021

    • Author(s)
      伊藤拓宏
    • Organizer
      第44回日本分子生物学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 統合的ストレス応答阻害剤ISRIBの作用機序2020

    • Author(s)
      伊藤拓宏
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] ストレス応答による翻訳開始停止機構の構造基盤~X線結晶構造解析とクライオ電子顕微鏡2020

    • Author(s)
      伊藤拓宏
    • Organizer
      第64回日本薬学会関東支部大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] eIF2 のリン酸化による eIF2B 活性の阻害機構2019

    • Author(s)
      柏木一宏
    • Organizer
      第21回日本RNA学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Structural basis of eIF2B regulation by eIF2 phosphorylation2019

    • Author(s)
      Kashiwagi Kazuhiro
    • Organizer
      EMBO Workshop, Protein Synthesis and Translational Control
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] HCV IRES captures an actively translating 80S ribosome to hijack the host translational machinery2019

    • Author(s)
      Ito Takuhiro
    • Organizer
      EMBO Workshop, Protein Synthesis and Translational Control
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] eIF2のリン酸化によるeIF2BのGEF活性制御の構造基盤2019

    • Author(s)
      伊藤拓宏
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 翻訳の構造生物学~cryo-EMによる単粒子解析およびX線結晶構造解析、FMO法による解析例~2019

    • Author(s)
      伊藤拓宏
    • Organizer
      CBI学会第411回講演会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Remarks] 翻訳構造解析研究チーム

    • URL

      https://www.bdr.riken.jp/ja/research/labs/ito-t/index.html

    • Related Report
      2021 Annual Research Report
  • [Remarks] 翻訳構造解析研究チーム

    • URL

      https://www.bdr.riken.jp/jp/research/labs/ito-t/index.html

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report

URL: 

Published: 2019-04-18   Modified: 2023-01-30  

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