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Super-resolution imaging with distance measurement at 1 nm accuracy in live cells

Research Project

Project/Area Number 19H03202
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 43040:Biophysics-related
Research InstitutionNational Institute of Information and Communications Technology

Principal Investigator

Matsuda Atsushi  国立研究開発法人情報通信研究機構, 未来ICT研究所神戸フロンティア研究センター, 主任研究員 (20585723)

Co-Investigator(Kenkyū-buntansha) 浜崎 淳一  国立研究開発法人情報通信研究機構, 未来ICT研究所小金井フロンティア研究センター, 主任研究員 (80399980)
Project Period (FY) 2019-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥17,290,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥3,990,000)
Fiscal Year 2022: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2021: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2020: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2019: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Keywords顕微鏡 / 超解像顕微鏡 / 補償光学 / 二光子顕微鏡 / 距離計測 / 核膜孔複合体
Outline of Research at the Start

本研究は、生物学者と工学者が連携し、微小なタンパク質複合体の動的な構造を、1nmという正確さで、生きた細胞内で明らかにするための蛍光イメージング技術の開発である。研究代表者が開発した技術と新しい原理に基づく距離測定法を用いて、生細胞内で1nm以下の距離測定精度を実現する。また、光の高次横モードなどを使用し、新しい超解像顕微鏡法を開発する。これらの蛍光イメージング技術を用いて、核膜孔複合体を始めとするタンパク質複合体構造の全貌を生きた細胞内で明らかにし、タンパク質集合過程などの動的変化を研究する。

Outline of Final Research Achievements

Advances in super-resolution and cryo-electron microscopy revealed the detailed structures of minute organelles and highly functional protein complexes in living organisms. However, a great deal of technical development is still needed to achieve high resolution in living cells. In the course of this research, it became clear that in order to achieve these techniques, it is necessary to correct optical aberrations, which are a fundamental optical problem. In this research, we developed an innovative method that can correct optical aberrations after image acquisition.

Academic Significance and Societal Importance of the Research Achievements

本研究の計算補償光学は光学的な補償光学と比較してはるかに簡便であり、実用化できれば、様々な高精度の計測が可能になると考えられる。生体深部観察の分解能を飛躍的に向上できるほか、超解像顕微鏡の発展にも貢献すると考えられる。

Report

(5 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • Research Products

    (30 results)

All 2022 2021 2020 2019 Other

All Int'l Joint Research (3 results) Journal Article (12 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 12 results,  Open Access: 12 results) Presentation (10 results) (of which Int'l Joint Research: 4 results,  Invited: 2 results) Remarks (3 results) Patent(Industrial Property Rights) (2 results)

  • [Int'l Joint Research] St. Jude Children’s Research Hospital(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Ludwig-Maximilians-University of Munich(ドイツ)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] University of Oxford(英国)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Roadmap of incoherent digital holography2022

    • Author(s)
      Tahara Tatsuki、Zhang Yaping、Rosen Joseph、Anand Vijayakumar、Cao Liangcai、Wu Jiachen、Koujin Takako、Matsuda Atsushi、Ishii Ayumi、Kozawa Yuichi、Okamoto Ryo、Oi Ryutaro、Nobukawa Teruyoshi、Choi Kihong、Imbe Masatoshi、Poon Ting-Chung
    • Journal Title

      Applied Physics B

      Volume: 128 Issue: 11 Pages: 193-193

    • DOI

      10.1007/s00340-022-07911-x

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Quantitative phase imaging with single-path phase-shifting digital holography using a light-emitting diode2021

    • Author(s)
      Tahara Tatsuki、Kozawa Yuichi、Matsuda Atsushi、Oi Ryutaro
    • Journal Title

      OSA Continuum

      Volume: 4 Issue: 11 Pages: 2918-2918

    • DOI

      10.1364/osac.435949

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Roadmap on Recent Progress in FINCH Technology2021

    • Author(s)
      Rosen Joseph、Alford Simon、Anand Vijayakumar、Art Jonathan、Bouchal Petr、Bouchal Zden?k、Erdenebat Munkh-Uchral、Huang Lingling、Ishii Ayumi、Juodkazis Saulius、Kim Nam、Kner Peter、Koujin Takako、Kozawa Yuichi、Liang Dong、Liu Jun、Mann Christopher、Marar Abhijit、Matsuda Atsushi、他七名
    • Journal Title

      Journal of Imaging

      Volume: 7 Issue: 10 Pages: 197-197

    • DOI

      10.3390/jimaging7100197

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Subtelomeric Chromatin in the Fission Yeast S. pombe2021

    • Author(s)
      Yadav Rajesh K.、Matsuda Atsushi、Lowe Brandon R.、Hiraoka Yasushi、Partridge Janet F.
    • Journal Title

      Microorganisms

      Volume: 9 Issue: 9 Pages: 1977-1977

    • DOI

      10.3390/microorganisms9091977

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Linear elements are stable structures along the chromosome axis in fission yeast meiosis2021

    • Author(s)
      Ding Da-Qiao、Matsuda Atsushi、Okamasa Kasumi、Hiraoka Yasushi
    • Journal Title

      Chromosoma

      Volume: 2021 Issue: 2-3 Pages: 149-162

    • DOI

      10.1007/s00412-021-00757-w

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Surprising phenotypic diversity of cancer-associated mutations of Gly 34 in the histone H3 tail2021

    • Author(s)
      Lowe Brandon R、Yadav Rajesh K、Henry Ryan A、Schreiner Patrick、Matsuda Atsushi、Fernandez Alfonso G、Finkelstein David、Campbell Margaret、Kallappagoudar Satish、Jablonowski Carolyn M、Andrews Andrew J、Hiraoka Yasushi、Partridge Janet F
    • Journal Title

      eLife

      Volume: 10

    • DOI

      10.7554/elife.65369

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Incoherent color digital holography with computational coherent superposition for fluorescence imaging [Invited]2020

    • Author(s)
      Tahara Tatsuki、Koujin Takako、Matsuda Atsushi、Ishii Ayumi、Ito Tomoyoshi、Ichihashi Yasuyuki、Oi Ryutaro
    • Journal Title

      Applied Optics

      Volume: 60 Issue: 4 Pages: A260-A260

    • DOI

      10.1364/ao.406068

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Imaging performance of microscopy adaptive-optics system using scene-based wavefront sensing2020

    • Author(s)
      Ashida Yusuke、Honma Yusuke、Miura Noriaki、Shibuya Takatoshi、Kikuchi Hayao、Tamada Yosuke、Kamei Yasuhiro、Matsuda Atsushi、Hattori Masayuki
    • Journal Title

      Journal of Biomedical Optics

      Volume: 25 Issue: 12 Pages: 123707-123707

    • DOI

      10.1117/1.jbo.25.12.123707

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] High-Accuracy Correction of 3D Chromatic Shifts in the Age of Super-Resolution Biological Imaging Using <em>Chromagnon</em>2020

    • Author(s)
      Matsuda Atsushi、Koujin Takako、Schermelleh Lothar、Haraguchi Tokuko、Hiraoka Yasushi
    • Journal Title

      Journal of Visualized Experiments

      Volume: 160 Issue: 160 Pages: 1-22

    • DOI

      10.3791/60800

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Chaperone FACT and Histone H2B Ubiquitination Maintain S. pombe Genome Architecture through Genic and Subtelomeric Functions2020

    • Author(s)
      Murawska Magdalena、Schauer Tamas、Matsuda Atsushi、Wilson Marcus D.、Pysik Thomas、Wojcik Felix、Muir Tom W.、Hiraoka Yasushi、Straub Tobias、Ladurner Andreas G.
    • Journal Title

      Molecular Cell

      Volume: 77 Issue: 3 Pages: 501-513.e7

    • DOI

      10.1016/j.molcel.2019.11.016

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Syndapin constricts microvillar necks to form a united rhabdomere in Drosophila photoreceptors2019

    • Author(s)
      Ogi Sakiko、Matsuda Atsushi、Otsuka Yuna、Liu Ziguang、Satoh Takunori、Satoh Akiko K.
    • Journal Title

      Development

      Volume: 146

    • DOI

      10.1242/dev.169292

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Asymmetrical localization of Nup107-160 subcomplex components within the nuclear pore complex in fission yeast2019

    • Author(s)
      Asakawa Haruhiko、Kojidani Tomoko、Yang Hui-Ju、Ohtsuki Chizuru、Osakada Hiroko、Matsuda Atsushi、Iwamoto Masaaki、Chikashige Yuji、Nagao Koji、Obuse Chikashi、Hiraoka Yasushi、Haraguchi Tokuko
    • Journal Title

      PLOS Genetics

      Volume: 15 Issue: 6 Pages: 008061-1008061

    • DOI

      10.1371/journal.pgen.1008061

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 生体深部の光の揺らぎを補正する計算補償光学を用いた超解像イメージング2021

    • Author(s)
      松田厚志
    • Organizer
      日本光学会年次学術講演会2021、シンポジウム「3時現場を伝搬する光の散乱・揺らぎ計算イメージング」
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 細胞の前端部に局在する繊毛虫テトラヒメナのタンパク質2021

    • Author(s)
      山本孝治、福田紀子、岩本政明、松田厚志
    • Organizer
      分子生物学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Post-processing, computational adaptive optics for 3D super-resolution microscopy2021

    • Author(s)
      松田厚志
    • Organizer
      生物物理学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 細胞の前端部に局在する繊毛虫テトラヒメナのヌクレオポリンMicNup98A2021

    • Author(s)
      山本孝治、福田紀子、近重 裕次、岩本政明、松田厚志
    • Organizer
      原生生物学会大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Basal bodies in the anterior region of the Tetrahymena cell are binding sites for nucleoporin MicNup98A2021

    • Author(s)
      Yamamoto T, Fukuta N, Iwamoto M, Matsuda A
    • Organizer
      Ciliate Molecular Biology
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] POST-PROCESSING, COMPUTATIONAL ADAPTIVE OPTICS FOR 3D SUPER-RESOLUTION MICROSCOPY2021

    • Author(s)
      Matsuda A
    • Organizer
      Focus on Microscopy
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 3次元超解像顕微鏡における注意点と光学収差の高精度補正2020

    • Author(s)
      松田厚志
    • Organizer
      日本顕微鏡学会第76回学術講演会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Differential sensing technique for correlation-based adaptive optics2020

    • Author(s)
      Kikuchi H, Honma Y, Miura N, Shibuya Y, Tamada Y, Matsuda A, Hattori M
    • Organizer
      Adaptive Optics and Wavefront Control for Biological Systems VI
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 分裂酵母染色体核内配置マップの作成2019

    • Author(s)
      近重 裕次、松田 厚志、荒神 尚子、福田 紀子、佐伯 恵里、岡正 華澄、丁 大橋、森 知栄、原口 徳子、平岡 泰
    • Organizer
      第42回 日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Asymmetrical localization of Nup107-160 subcomplex components within the nuclear pore complex in fission yeast2019

    • Author(s)
      Asakawa H, Kojidani T, Yang H-J, Ohtsuki C, Osakada Y, Matsuda A, Iwamoto M, Chikashige Y, Nagao K, Obuse C, Hiraoka Y, Haraguchi T
    • Organizer
      EMBO The International Fission Yeast Meeting
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Remarks] 生物情報プロジェクト

    • URL

      https://www2.nict.go.jp/frontier/seibutsu/CellMagic/index.html

    • Related Report
      2022 Annual Research Report 2020 Annual Research Report 2019 Annual Research Report
  • [Remarks] ResearchMap

    • URL

      https://researchmap.jp/macronucleus

    • Related Report
      2022 Annual Research Report 2021 Annual Research Report 2020 Annual Research Report 2019 Annual Research Report
  • [Remarks] 生物情報プロジェクト

    • URL

      https://www2.nict.go.jp/bio/seibutsu/CellMagic/

    • Related Report
      2021 Annual Research Report
  • [Patent(Industrial Property Rights)] 顕微鏡画像補正方法及び顕微鏡画像補正プログラム2022

    • Inventor(s)
      松田厚志・根本知己・大友康平・高橋泰伽
    • Industrial Property Rights Holder
      松田厚志・根本知己・大友康平・高橋泰伽
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2022-132546
    • Filing Date
      2022
    • Related Report
      2022 Annual Research Report
  • [Patent(Industrial Property Rights)] 光学収差補正プログラム及び光学波面推定プログラム2020

    • Inventor(s)
      松田厚志
    • Industrial Property Rights Holder
      情報通信研究機構
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2020-120496
    • Filing Date
      2020
    • Related Report
      2019 Annual Research Report

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Published: 2019-04-18   Modified: 2024-01-30  

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