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Gene identification of rare genetic diseases by Multi-Omics analysis

Research Project

Project/Area Number 19H03621
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 52050:Embryonic medicine and pediatrics-related
Research InstitutionNational Center for Global Health and Medicine (2020-2021)
Yokohama City University (2019)

Principal Investigator

Miyake Noriko  国立研究開発法人国立国際医療研究センター, 研究所, 疾患ゲノム研究部 部長 (40523494)

Project Period (FY) 2019-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥17,420,000 (Direct Cost: ¥13,400,000、Indirect Cost: ¥4,020,000)
Fiscal Year 2021: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2020: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2019: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Keywords単一遺伝子疾患 / 網羅的ゲノム解析 / 発症病態解明 / 新規疾患遺伝子 / Multi-Omics / 全エクソーム解析 / 新規遺伝子候補 / オミックス解析 / 稀少難治性疾患 / 遺伝要因 / 遺伝子解析 / ゲノム解析 / MN1 / プロテオーム解析 / 相分離 / 遺伝学的解析
Outline of Research at the Start

遺伝要因が未知のヒト稀少難治性疾患を対象に、網羅的遺伝子解析を行い、新規疾患遺伝子の同定を行う。更に、疾患病態解明を目的としてMulti-Omics解析を併用し、変異遺伝子が介する分子病理を解明し、診断法・予防法の開発と「治療戦略」構築を目指す。

Outline of Final Research Achievements

We performed comprehensive genetic analysis, mainly exome sequencing, to identity novel human disease genes. We collected samples together with detailed clinical information to understand the main phenotype, complications, and clinical course. The most impactful work is the identification of the MN1 gene for a new syndrome with craniofacial and brain abnormalities. Using Multi-Omics analysis, we revealed that this disease was caused by gain-of-function mechanism of MN1. In addtion, we reported the extremely rare cases caused by relatively newly identified disease genes, ABHD16A and COG1, in which only a few patients have been reported. By our review of the previoulsy reported cases and our cases, we reported the common clinical features which would be a great help for clinical diagnosis.

Academic Significance and Societal Importance of the Research Achievements

原因不明の稀少遺伝性難治疾患における原因究明は、患者・家族や医療者を含めた周囲の精神的・経済的負担の軽減の観点でも急務である。疾患原因遺伝子を同定することは、変異が来す分子病態・発症メカニズムを明らかにするための第一歩と位置づけられ、予防・治療法開発の契機となる。稀少遺伝性難治疾患の原因となりうるde novo 遺伝子変異は、一定の頻度で生じ、世界中どこでも発症しうる。本研究の成果は、日本に限定することなく、世界中の稀少遺伝子疾患の患者の診断や遺伝子カウンセリング、また医療側が適切な医療を行う上で非常に重要な情報を提供するものである。

Report

(4 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • Research Products

    (77 results)

All 2022 2021 2020 2019 2018 Other

All Int'l Joint Research (17 results) Journal Article (53 results) (of which Int'l Joint Research: 35 results,  Peer Reviewed: 53 results,  Open Access: 14 results) Presentation (6 results) (of which Int'l Joint Research: 2 results,  Invited: 6 results) Book (1 results)

  • [Int'l Joint Research] Victorian Clinical Genetics Services/Murdoch Children's Research Institute/The University of Melbourne(オーストラリア)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] University of Oxford/John Radcliffe Hospital(英国)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] Hospital de Puerto Montt/Universidad de Chile(チリ)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] entre Hospitalier Saint-Louis/Hopital Armand Trousseau/CHU de Nantes(フランス)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] University of Illinois at Chicago/Carolinas Medical Center/MIT(米国)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] Tarbiat Modares University/Isfahan University of Medical Sciences/Tehran University of Medical Sciences(イラン)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Hospital Kuala Lumpur(マレーシア)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Hospital de Puerto Montt/Universidad de Chile/Clinica Alemana de Santiago(チリ)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Astronaut Research and Training Center/Central South University(中国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Universidade de Sao Paulo(ブラジル)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Central South University/The Second Xiangya Hospital/The University of Hong Kong(中国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Aalborg University Hospital,/Aarhus University Hospital(デンマーク)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Hospital Kuala Lumpur(マレーシア)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Universitaire de Nantes/Hopital Armand Trousseau/Sorbonne Universite(フランス)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Ghent University Hospital(ベルギー)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Repeat conformation heterogeneity in cerebellar ataxia, neuropathy, vestibular areflexia syndrome2022

    • Author(s)
      Miyatake S, Yoshida K, Koshimizu E, others, Miyake N, Shimohata T, Tanaka F, Mizuguchi T, Matsumoto N.
    • Journal Title

      Brain

      Volume: 145 Issue: 3 Pages: 1139-1150

    • DOI

      10.1093/brain/awab363

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Large-scale discovery of novel neurodevelopmental disorder-related genes through a unified analysis of single-nucleotide and copy number variants.2022

    • Author(s)
      Hamanaka K, Miyake N, Mizuguchi T, Miyatake S, Uchiyama Y, Tsuchida N, Sekiguchi F, Mitsuhashi S, Tsurusaki Y, Nakashima M, Saitsu H, Yamada K, Sakamoto M, Fukuda H, Ohori S, Saida K, Itai T, Azuma Y, Koshimizu E, Fujita A, Erturk B, Hiraki Y, Ch'ng GS, Kato M, Okamoto N, Takata A, Matsumoto N.
    • Journal Title

      Genome Med

      Volume: 14 Issue: 1 Pages: 40-40

    • DOI

      10.1186/s13073-022-01042-w

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Polymicrogyria in a child with KCNMA1-related channelopathy2022

    • Author(s)
      Graber D, Imagawa E, Miyake N, Matsumoto N, Miyatake S, Graber M, Isidor B.
    • Journal Title

      Brain and Development

      Volume: 44 Issue: 2 Pages: 173-177

    • DOI

      10.1016/j.braindev.2021.09.009

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Recurrent de novo missense variants in GNB2 can cause syndromic intellectual disability2021

    • Author(s)
      Tan NB, Pagnamenta AT, others, Matsumoto N, Miyake N, Sheffer R, Mor-Shaked H, Barnett CP, Byrne AB, Scott HS, Kraus A, Cappuccio G, Brunetti-Pierri N, Iorio R, Di Dato F, Pais LS, Yeung A, Tan TY, Taylor JC, Christodoulou J, White SM.
    • Journal Title

      Journal of Medical Genetics

      Volume: 59 Issue: 5 Pages: 511-516

    • DOI

      10.1136/jmedgenet-2020-107462

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A homozygous ABHD16A variant causes a complex hereditary spastic paraplegia with developmental delay, absent speech, and characteristic face2021

    • Author(s)
      Miyake N, Silva S, Troncoso M, Okamoto N, Andachi Y, Kato M, Iwabuchi C, Hirose M, Fujita A, Uchiyama Y, Matsumoto N.
    • Journal Title

      Clinical Genetics

      Volume: 101 Issue: 3 Pages: 359-363

    • DOI

      10.1111/cge.14097

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] SLC4A2 Deficiency Causes a New Type of Osteopetrosis2021

    • Author(s)
      Xue JY, Grigelioniene G, Wang Z, Nishimura G, Iida A, Matsumoto N, Tham E, Miyake N, Ikegawa S, Guo L.
    • Journal Title

      Journal of Bone and Mineral Research

      Volume: 37 Issue: 2 Pages: 226-235

    • DOI

      10.1002/jbmr.4462

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Expanding the phenotypic spectrum of cardiospondylocarpofacial syndrome: From a detailed clinical and radiological observation of a boy with a novel missense variant in MAP3K72021

    • Author(s)
      Minatogawa M, Miyake N, Tsukahara Y, Tanabe Y, Uchiyama T, Matsumoto N, Kosho T.
    • Journal Title

      American Journal of Medical Genetics Part A

      Volume: 188 Issue: 1 Pages: 350-356

    • DOI

      10.1002/ajmg.a.62516

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] <i>De novo ARF3</i> variants cause neurodevelopmental disorder with brain abnormality2021

    • Author(s)
      Sakamoto M、Sasaki K、Sugie A、Nitta Y、Kimura T、G?rsoy S、Cinleti T、Iai M、Sengoku T、Ogata K、Suzuki A、Okamoto N、Iwama K、Tsuchida N、Uchiyama Y、Koshimizu E、Fujita A、Hamanaka K、Miyatake S、Mizuguchi T、Taguri M、Ito S、Takahashi H、Miyake N、Matsumoto N
    • Journal Title

      Human Molecular Genetics

      Volume: 31 Issue: 1 Pages: 69-81

    • DOI

      10.1093/hmg/ddab224

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Valine metabolites analysis in ECHS1 deficiency2021

    • Author(s)
      Kuwajima M, Kojima K, Osaka H, Hamada Y, Jimbo E, Watanabe M, Aoki S, Sato-Shirai I, Ichimoto K, Fushimi T, Murayama K, Ohtake A, Kohda M, Kishita Y, Yatsuka Y, Uchino S, Mimaki M, Miyake N, Matsumoto N, Okazaki Y, Ogata T, Yamagata T, Muramatsu K.
    • Journal Title

      Molecular Genetics and Metabolism Reports

      Volume: 29 Pages: 100809-100809

    • DOI

      10.1016/j.ymgmr.2021.100809

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Pathogenic variants in the survival of motor neurons complex gene GEMIN5 cause cerebellar atrophy2021

    • Author(s)
      Saida Ken et al.
    • Journal Title

      Clinical Genetics

      Volume: 100 Issue: 6 Pages: 722-730

    • DOI

      10.1111/cge.14066

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Comprehensive Genetic Analysis of Non-syndromic Autism Spectrum Disorder in Clinical Settings2021

    • Author(s)
      Ohashi K, Fukuhara S, Miyachi T, Asai T, Imaeda M, Goto M, Kurokawa Y, Anzai T, Tsurusaki Y, Miyake N, Matsumoto N, Yamagata T, Saitoh S
    • Journal Title

      J Autism Dev Disord

      Volume: なし Issue: 12 Pages: 4655-4662

    • DOI

      10.1007/s10803-021-04910-3

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Novel variants in aromatic L-amino acid decarboxylase deficiency: Case report of sisters with mild phenotype2021

    • Author(s)
      Hasegawa Y, Nishi E, Mishima Y, Sakaguchi T, Sekiguchi F, Miyake N, Kojima K, Osaka H, Matsumoto N, Okamoto N.
    • Journal Title

      Brain and Development

      Volume: 43 Issue: 10 Pages: 1023-1028

    • DOI

      10.1016/j.braindev.2021.07.002

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] De novo pathogenic DHX30 variants in two cases2021

    • Author(s)
      Miyake N, Kim CA, Haginoya K, Castro MAA, Honjo RS, Matsumoto N.
    • Journal Title

      Clinical Genetics

      Volume: 100 Issue: 3 Pages: 350-351

    • DOI

      10.1111/cge.14013

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] COG1‐congenital disorders of glycosylation: Milder presentation and review2021

    • Author(s)
      Salazar M, Miyake N, Silva S, Solar B, Papazoglu GM, Asteggiano CG, Matsumoto N
    • Journal Title

      Clinical Genetics

      Volume: 100 Issue: 3 Pages: 318-323

    • DOI

      10.1111/cge.13980

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Remitting and exacerbating white matter lesions in leukoencephalopathy with thalamus and brainstem involvement and high lactate2021

    • Author(s)
      Sawada D, Naito S, Aoyama H, Shiohama T, Ichikawa T, Imagawa E, Miyake N, Matsumoto N, Fujii K.
    • Journal Title

      Brain and Development

      Volume: 43 Issue: 7 Pages: 798-803

    • DOI

      10.1016/j.braindev.2021.03.008

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Clinical course of epilepsy and white matter abnormality linked to a novel DYRK1A variant2021

    • Author(s)
      Okazaki T, Yamada H, Matsuura K, Kasagi N, Miyake N, Matsumoto N, Adachi K, Nanba E, Maegaki Y.
    • Journal Title

      Human Genome Variation

      Volume: 8 Issue: 1 Pages: 26-26

    • DOI

      10.1038/s41439-021-00157-7

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Clinical delineation, sex differences, and genotype-phenotype correlation in pathogenic KDM6A variants causing X-linked Kabuki syndrome type 22021

    • Author(s)
      Faundes V, Goh S, Akilapa R, Bezuidenhout H, others, Miyake N, Benoit V, Lederer D, Banka S.
    • Journal Title

      Genetics in Medicine

      Volume: 23 Issue: 7 Pages: 1202-1210

    • DOI

      10.1038/s41436-021-01119-8

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Expanding the phenotypic spectrum of TNFRSF11A-associated dysosteosclerosis: a case with intracranial extramedullary hematopoiesis2021

    • Author(s)
      Xue Jing-Yi、Simsek-Kiper Pelin O.、Utine Gulen Eda、Yan Li、Wang Zheng、Taskiran Ekim Z.、Karaosmanoglu Beren、Imren Gozde、Gocmen Rahsan、Nishimura Gen、Matsumoto Naomichi、Miyake Noriko、Ikegawa Shiro、Guo Long
    • Journal Title

      Journal of Human Genetics

      Volume: 66 Issue: 6 Pages: 607-611

    • DOI

      10.1038/s10038-020-00891-w

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Complete sequencing of expanded SAMD12 repeats by long-read sequencing with Cas9-mediated enrichment.2021

    • Author(s)
      Mizuguchi T, Toyota T, Miyatake S, Mitsuhashi S, Doi H, Kudo Y, Kishida H, Hayashi N, Tusburaya RS, Kinoshita M, Fukuyama T, Fukuda H, Koshimizu E, Tsuchida N, Uchiyama Y, Fujita A, Takata A, Miyake N, Kato M, Tanaka F, Adachi H, Matsumoto N.
    • Journal Title

      Brain

      Volume: 144 Issue: 4 Pages: 1103-1117

    • DOI

      10.1093/brain/awab021

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Brazilian case arising from a homozygous canonical splice site SLC35A3 variant leading to an in‐frame deletion2021

    • Author(s)
      Miyake N, de Oliveira Stephan B, Kim CA, Matsumoto N.
    • Journal Title

      Clinical Genetics

      Volume: 99 Issue: 4 Pages: 607-608

    • DOI

      10.1111/cge.13909

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A patient with a 6q22.1 deletion and a phenotype of non-progressive early-onset generalized epilepsy with tremor2021

    • Author(s)
      Haginoya Kazuhiro、Sekiguchi Futoshi、Munakata Mitsutoshi、Yokoyama Hiroyuki、Hino-Fukuyo Naomi、Uematsu Mitsugu、Jin Kazutaka、Nagamatsu Kenichi、Ando Tadashi、Miyake Noriko、Matsumoto Naomichi、Kure Shigeo
    • Journal Title

      Epilepsy & Behavior Reports

      Volume: 15 Pages: 100405-100405

    • DOI

      10.1016/j.ebr.2020.100405

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pathogenic 12-kb copy-neutral inversion in syndromic intellectual disability identified by high-fidelity long-read sequencing2021

    • Author(s)
      Mizuguchi T, Okamoto N, Yanagihara K, Miyatake S, Uchiyama Y, Tsuchida N, Hamanaka K, Fujita A, Miyake N, Matsumoto N.
    • Journal Title

      Genomics

      Volume: 113 Issue: 1 Pages: 1044-1053

    • DOI

      10.1016/j.ygeno.2020.10.038

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Immunodeficiency in a patient with microcephalic osteodysplastic primordial dwarfism type I as compared to Roifman syndrome2021

    • Author(s)
      Hagiwara Hidetoshi、Matsumoto Hiroshi、Uematsu Kenji、Zaha Kiyotaka、Sekinaka Yujin、Miyake Noriko、Matsumoto Naomichi、Nonoyama Shigeaki
    • Journal Title

      Brain and Development

      Volume: 43 Issue: 2 Pages: 337-342

    • DOI

      10.1016/j.braindev.2020.09.007

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel EXOSC9 variants cause pontocerebellar hypoplasia type 1D with spinal motor neuronopathy and cerebellar atrophy2020

    • Author(s)
      Sakamoto Masamune、Iwama Kazuhiro、Sekiguchi Futoshi、Mashimo Hideaki、Kumada Satoko、Ishigaki Keiko、Okamoto Nobuhiko、Behnam Mahdiyeh、Ghadami Mohsen、Koshimizu Eriko、Miyatake Satoko、Mitsuhashi Satomi、Mizuguchi Takeshi、Takata Atsushi、Saitsu Hirotomo、Miyake Noriko、Matsumoto Naomichi
    • Journal Title

      Journal of Human Genetics

      Volume: 66 Issue: 4 Pages: 401-407

    • DOI

      10.1038/s10038-020-00853-2

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The identification of two pathogenic variants in a family with mild and severe forms of developmental delay2020

    • Author(s)
      Miyake Noriko、Heydari Shermineh、Garshasbi Masoud、Saitoh Shinji、Nasiri Jafar、Hamanaka Kohei、Takata Atsushi、Matsumoto Naomichi、Beheshti Farnaz Hosseini、Chaleshtori Ahmad Reza Salehi
    • Journal Title

      Journal of Human Genetics

      Volume: 66 Issue: 4 Pages: 445-448

    • DOI

      10.1038/s10038-020-0809-8

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Neuronal intranuclear inclusion disease presenting with an MELAS-like episode in chronic polyneuropathy2020

    • Author(s)
      Ishihara T, Okamoto T, Saida K, Saitoh Y, Oda S, Sano T, Yoshida T, Morita Y, Fujita A, Fukuda H, Miyake N, Mizuguchi T, Saito Y, Sekijima Y, Matsumoto N and Takahashi Y
    • Journal Title

      Neurol Genet

      Volume: 6 Issue: 6

    • DOI

      10.1212/nxg.0000000000000531

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hemizygous FLNA variant in West syndrome without periventricular nodular heterotopia2020

    • Author(s)
      Hiromoto Y, Azuma Y, Suzuki Y, Hoshina M, Uchiyama Y, Mitsuhashi S, Miyatake S, Mizuguchi T, Takata A, Miyake N, Kato M, Matsumoto N.
    • Journal Title

      Hum Genome Var

      Volume: 7 Issue: 1 Pages: 43-43

    • DOI

      10.1038/s41439-020-00131-9

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Efficient detection of copy‐number variations using exome data: Batch‐ and sex‐based analyses2020

    • Author(s)
      Uchiyama Yuri、Yamaguchi Daisuke、Iwama Kazuhiro, et al.
    • Journal Title

      Human Mutation

      Volume: 42 Issue: 1 Pages: 50-65

    • DOI

      10.1002/humu.24129

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A novel ITPA variant causes epileptic encephalopathy with multiple-organ dysfunction2020

    • Author(s)
      Sakamoto M, Kouhei D, Haniffa M, Silva S, Troncoso M, Santander P, Schonstedt V, Stecher X, Okamoto N, Hamanaka K, Mizuguchi T, Mitsuhashi S, Miyake N and Matsumoto N
    • Journal Title

      J Hum Genet

      Volume: 65 Issue: 9 Pages: 751-757

    • DOI

      10.1038/s10038-020-0765-3

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Long-read DNA sequencing fully characterized chromothripsis in a patient with Langer?Giedion syndrome and Cornelia de Lange syndrome-42020

    • Author(s)
      Lei Ming、Liang Desheng、Yang Yifeng、Mitsuhashi Satomi、Katoh Kazutaka、Miyake Noriko、Frith Martin C.、Wu Lingqian、Matsumoto Naomichi
    • Journal Title

      Journal of Human Genetics

      Volume: - Issue: 8 Pages: 667-674

    • DOI

      10.1038/s10038-020-0754-6

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] De Novo Truncating Variants in the Last Exon of SEMA6B Cause Progressive Myoclonic Epilepsy2020

    • Author(s)
      Hamanaka Kohei、Imagawa Eri、Koshimizu Eriko、Miyatake Satoko、Tohyama Jun、Yamagata Takanori、Miyauchi Akihiko、Ekhilevitch Nina、Nakamura Fumio、Kawashima Takeshi、Takata Atsushi、Miyake Noriko、Matsumoto Naomichi et al.,
    • Journal Title

      The American Journal of Human Genetics

      Volume: 106(4) Issue: 4 Pages: 549-558

    • DOI

      10.1016/j.ajhg.2020.02.011

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Pathogenic DDX3X Mutations Impair RNA Metabolism and Neurogenesis during Fetal Cortical Development2020

    • Author(s)
      Lennox Ashley L.、Hoye Mariah L.、Jiang Ruiji、Johnson-Kerner Bethany L.、others、Miyake Noriko、Matsumoto Naomichi、Fujita Atsushi、others、Sherr Elliott H.
    • Journal Title

      Neuron

      Volume: 106 Issue: 3 Pages: 404-420.e8

    • DOI

      10.1016/j.neuron.2020.01.042

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Delineation of musculocontractural Ehlers?Danlos Syndrome caused by dermatan sulfate epimerase deficiency2020

    • Author(s)
      Lautrup Charlotte K.、Teik Keng W.、Unzaki Ai、Mizumoto Shuji、Syx Delfien、Sin Heng H.、Nielsen Irene K.、Markholt Sara、Yamada Shuhei、Malfait Fransiska、Matsumoto Naomichi、Miyake Noriko、Kosho Tomoki
    • Journal Title

      Molecular Genetics & Genomic Medicine

      Volume: 8 Issue: 5

    • DOI

      10.1002/mgg3.1197

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Gain-of-Function MN1 Truncation Variants Cause a Recognizable Syndrome with Craniofacial and Brain Abnormalities2020

    • Author(s)
      Miyake Noriko et al., Matsumoto Naomichi
    • Journal Title

      The American Journal of Human Genetics

      Volume: 106 Issue: 1 Pages: 13-25

    • DOI

      10.1016/j.ajhg.2019.11.011

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The recurrent postzygotic pathogenic variant p.Glu47Lys in RHOA causes a novel recognizable neuroectodermal phenotype2019

    • Author(s)
      Yigit Gokhan、Saida Ken、DeMarzo Danielle、Miyake Noriko、Fujita Atsushi、Yang Tan Tiong、White Susan M.、Wadley Alexandrea、Toliat Mohammad R.、Motameny Susanne、Franitza Marek、Stutterd Chloe A.、Chong Pin F.、Kira Ryutaro、et al.
    • Journal Title

      Human Mutation

      Volume: 41 Issue: 3 Pages: 591-599

    • DOI

      10.1002/humu.23964

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Recurrent NUS1 canonical splice donor site mutation in two unrelated individuals with epilepsy, myoclonus, ataxia and scoliosis - a case report2019

    • Author(s)
      Den Kouhei、Kudo Yosuke、Kato Mitsuhiro、Watanabe Kosuke、Doi Hiroshi、Tanaka Fumiaki、Oguni Hirokazu、Miyatake Satoko、Mizuguchi Takeshi、Takata Atsushi、Miyake Noriko、Mitsuhashi Satomi、Matsumoto Naomichi
    • Journal Title

      BMC Neurology

      Volume: 19 Issue: 1 Pages: 253-253

    • DOI

      10.1186/s12883-019-1489-x

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Missense Mutations in NKAP Cause a Disorder of Transcriptional Regulation Characterized by Marfanoid Habitus and Cognitive Impairment2019

    • Author(s)
      Fiordaliso Sarah K.、.....Shirahige Katsuhiko、Izumi Kosuke
    • Journal Title

      The American Journal of Human Genetics

      Volume: 105 Issue: 5 Pages: 987-995

    • DOI

      10.1016/j.ajhg.2019.09.009

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genetic abnormalities in a large cohort of Coffin?Siris syndrome patients2019

    • Author(s)
      Sekiguchi Futoshi et al., Matsumoto Naomichi
    • Journal Title

      Journal of Human Genetics

      Volume: 64 Issue: 12 Pages: 1173-1186

    • DOI

      10.1038/s10038-019-0667-4

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Comparison of mitochondrial DNA variants detection using short- and long-read sequencing2019

    • Author(s)
      Alkanaq Ahmed N.、Hamanaka Kohei、Sekiguchi Futoshi、Taguri Masataka、Takata Atsushi、Miyake Noriko、Miyatake Satoko、Mizuguchi Takeshi、Matsumoto Naomichi
    • Journal Title

      Journal of Human Genetics

      Volume: 64 Issue: 11 Pages: 1107-1116

    • DOI

      10.1038/s10038-019-0654-9

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Comprehensive genetic analysis of 57 families with clinically suspected Cornelia de Lange syndrome2019

    • Author(s)
      Aoi Hiromi et al., Matsumoto Naomichi
    • Journal Title

      Journal of Human Genetics

      Volume: 64 Issue: 10 Pages: 967-978

    • DOI

      10.1038/s10038-019-0643-z

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] De Novo Variants Disturbing the Transactivation Capacity of POU3F3 Cause a Characteristic Neurodevelopmental Disorder2019

    • Author(s)
      Snijders Blok Lot., et al., Matsumoto Naomichintonio, et al., Fisher Simon E.
    • Journal Title

      The American Journal of Human Genetics

      Volume: 105 Issue: 2 Pages: 403-412

    • DOI

      10.1016/j.ajhg.2019.06.007

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Hemorrhagic stroke and renovascular hypertension with Grange syndrome arising from a novel pathogenic variant in YY1AP12019

    • Author(s)
      Saida Ken、Kim Chong Ae、Ceroni Jos? Ricardo Magliocco、Bertola Debora Romeo、Honjo Rachel Sayuri、Mitsuhashi Satomi、Takata Atsushi、Mizuguchi Takeshi、Miyatake Satoko、Miyake Noriko、Matsumoto Naomichi
    • Journal Title

      Journal of Human Genetics

      Volume: 64 Issue: 9 Pages: 885-890

    • DOI

      10.1038/s10038-019-0626-0

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The Liberfarb syndrome, a multisystem disorder affecting eye, ear, bone, and brain development, is caused by a founder pathogenic variant in the PISD gene2019

    • Author(s)
      Peter Virginie G, et al., Matsumoto Naomichi, et al., Campos-Xavier Belinda
    • Journal Title

      Genetics in Medicine

      Volume: 21 Issue: 12 Pages: 2734-2743

    • DOI

      10.1038/s41436-019-0595-x

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Pathogenic variants of DYNC2H1, KIAA0556, and PTPN11 associated with hypothalamic hamartoma2019

    • Author(s)
      Fujita Atsushi、Higashijima Takefumi、Shirozu Hiroshi、Masuda Hiroshi、Sonoda Masaki、Tohyama Jun、Kato Mitsuhiro、Nakashima Mitsuko、Tsurusaki Yoshinori、Mitsuhashi Satomi、Mizuguchi Takeshi、Takata Atsushi、Miyatake Satoko、Miyake Noriko、Fukuda Masafumi、Kameyama Shigeki、Saitsu Hirotomo、Matsumoto Naomichi
    • Journal Title

      Neurology

      Volume: 93 Issue: 3

    • DOI

      10.1212/wnl.0000000000007774

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comprehensive analysis of coding variants highlights genetic complexity in developmental and epileptic encephalopathy2019

    • Author(s)
      Takata Atsushi、Nakashima Mitsuko、Saitsu Hirotomo、Osaka Hitoshi、Nakamura Kazuyuki、Takeshita Saoko、Sakai Yasunari、Miyake Noriko、Miyatake Satoko、Matsumoto Naomichi
    • Journal Title

      Nature Communications

      Volume: 10 Issue: 1 Pages: 2506-2506

    • DOI

      10.1038/s41467-019-10482-9

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A novel de novo frameshift variant in SETD1B causes epilepsy2019

    • Author(s)
      Den Kouhei、Kato Mitsuhiro、Yamaguchi Tokito、Miyatake Satoko、Takata Atsushi、Mizuguchi Takeshi、Miyake Noriko、Mitsuhashi Satomi、Matsumoto Naomichi
    • Journal Title

      Journal of Human Genetics

      Volume: 64 Issue: 8 Pages: 821-827

    • DOI

      10.1038/s10038-019-0617-1

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Clinical and molecular spectrum of CHOPS syndrome2019

    • Author(s)
      Raible Sarah, et al., Matsumoto Naomichi et al., Izumi Kosuke
    • Journal Title

      American Journal of Medical Genetics Part A

      Volume: 179 Issue: 7 Pages: 1126-1138

    • DOI

      10.1002/ajmg.a.61174

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Mutations in ACTL6B Cause Neurodevelopmental Deficits and Epilepsy and Lead to Loss of Dendrites in Human Neurons2019

    • Author(s)
      Bell Scott, et al., Matsumoto Naomichi, et al., Ernst C*#, Campeau PM*# (*: co-correspondence) (#: equal contribution).
    • Journal Title

      The American Journal of Human Genetics

      Volume: 104 Issue: 5 Pages: 815-834

    • DOI

      10.1016/j.ajhg.2019.03.022

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Translocation breakpoint disrupting the host SNHG14 gene but not coding genes or snoRNAs in typical Prader-Willi syndrome2019

    • Author(s)
      Lei Ming、Mitsuhashi Satomi、Miyake Noriko、Ohta Tohru、Liang Desheng、Wu Lingqian、Matsumoto Naomichi
    • Journal Title

      Journal of Human Genetics

      Volume: 64 Issue: 7 Pages: 647-652

    • DOI

      10.1038/s10038-019-0596-2

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] MYRF haploinsufficiency causes 46,XY and 46,XX disorders of sex development: bioinformatics consideration2019

    • Author(s)
      Hamanaka K、Takata A、Uchiyama Y、Miyatake S、Miyake N、Mitsuhashi S、Iwama K、Fujita A、Imagawa E、Alkanaq AN、Koshimizu E、Azuma Y、Nakashima M、Mizuguchi T、Saitsu H、Wada Y、Minami S、Katoh-Fukui Y、Masunaga Y、Fukami M、Hasegawa T、Ogata T、Matsumoto N
    • Journal Title

      Human Molecular Genetics

      Volume: 印刷中 Issue: 14 Pages: 2319-2329

    • DOI

      10.1093/hmg/ddz066

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Bi-allelic CSF1R Mutations Cause Skeletal Dysplasia of Dysosteosclerosis-Pyle Disease Spectrum and Degenerative Encephalopathy with Brain Malformation2019

    • Author(s)
      Guo L, Bertola DR, Takanohashi A, Saito A, Segawa Y, Yokota T, Ishibashi S, Nishida Y, Yamamoto GL, Franco JFdS, Honjo RS, Kim CA, Musso CM, Timmons M, Pizzino A, Taft RJ, (以下21名省略), Ikegawa S.
    • Journal Title

      The American Journal of Human Genetics

      Volume: 104 Issue: 5 Pages: 925-935

    • DOI

      10.1016/j.ajhg.2019.03.004

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A Syndromic Neurodevelopmental Disorder Caused by Mutations in SMARCD1, a Core SWI/SNF Subunit Needed for Context-Dependent Neuronal Gene Regulation in Flies2019

    • Author(s)
      Nixon Kevin C.J.、Rousseau Justine、Stone Max H.、Sarikahya Mohammed、Ehresmann Sophie、Mizuno Seiji、Matsumoto Naomichi、Miyake Noriko、Baralle Diana、McKee Shane、Izumi Kosuke、Ritter Alyssa L.、Heide Solveig、H?ron Delphine、Depienne Christel、Titheradge Hannah、Kramer Jamie M.、Campeau Philippe M.
    • Journal Title

      The American Journal of Human Genetics

      Volume: 104 Issue: 4 Pages: 596-610

    • DOI

      10.1016/j.ajhg.2019.02.001

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Bi-allelic loss of function variants of TBX6 causes a spectrum of malformation of spine and rib including congenital scoliosis and spondylocostal dysostosis.2018

    • Author(s)
      Otomo N, Takeda K, Kawai S, Kou I, Guo L, Osawa M, Alev C, Kawakami N, Miyake N, Matsumoto N, Yasuhiko Y, Kotani T, Suzuki T, Uno K, Sudo H, Inami S, Taneichi H, Shigematsu H, Watanabe K, Yonezawa I, Sugawara R, Taniguchi Y, Minami S, Kaneko K, Nakamura M, Matsumoto M, Toguchida J, Watanabe K, Ikegawa S.
    • Journal Title

      Journal of Medical Genetics

      Volume: - Issue: 9 Pages: 622-628

    • DOI

      10.1136/jmedgenet-2018-105920

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Gain-of-Function MN1 Truncation Variants Cause a Recognizable Syndrome with Craniofacial and Brain Abnormalities2021

    • Author(s)
      Noriko Miyake
    • Organizer
      American Society of Human Genetics
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 転写活性化因子MN1の機能獲得型変異によるヒト疾患の病態解明2021

    • Author(s)
      三宅紀子
    • Organizer
      第44回日本分子生物学会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Identification of a novel gene for a newly recognizable syndrome and understanding its pathomechanism2020

    • Author(s)
      三宅紀子
    • Organizer
      第65回 日本人類遺伝学会、JSHG-APSHG Joint Symposium
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 稀少疾患の遺伝子同定と 発症メカニズムの解明2020

    • Author(s)
      三宅紀子
    • Organizer
      第43回日本小児遺伝学会学術集会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 染色体異常の診断・解釈に関する課題とその対応2019

    • Author(s)
      三宅紀子
    • Organizer
      日本人類遺伝学会 第64回大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Genetic analysis for Mendelian disorders with new technologies2019

    • Author(s)
      Noriko Miyake
    • Organizer
      the Genomic Medicine 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Book] Progress in Heritable Soft Connective Tissue Diseases2021

    • Author(s)
      Miyake N, Kosho T, Matsumoto N
    • Total Pages
      15
    • Publisher
      Springer
    • Related Report
      2021 Annual Research Report

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Published: 2019-04-18   Modified: 2023-01-30  

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