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Novel method for indentifying disulfide-linked proteins using hydrogen radical

Research Project

Project/Area Number 19K05530
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 34020:Analytical chemistry-related
Research InstitutionYokohama City University

Principal Investigator

Takayama Mitsuo  横浜市立大学, 理学部, 教授 (10328635)

Project Period (FY) 2019-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2021: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2020: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2019: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords水素ラジカル / ジスルフィド結合 / タンパク質化学 / タンパク質 / 酸加水分解 / 質量分析
Outline of Research at the Start

本研究は、複数のジスルフィド(S-S)結合を有するタンパク質のアミノ酸配列およびS-S結合部位を決定できる手法を確立する。S-S結合はタンパク質の機能と直接関連する高次構造を安定化させ酵素消化にも耐性を与えるため、S-S結合含有のペプチドやタンパク質製剤にも利用される重要な製薬技術の一つである。しかし、その安定性のためにアミノ酸配列解析など分析が困難であった。本研究は、これまで申請者が基礎研究を行ってきた水素ラジカルの特異的分解反応の機構と特性を基盤とし、S-S結合含有タンパク質の迅速分析を可能にする技術を提出する。

Outline of Final Research Achievements

Disulfide-bridged (S-S) containing proteins bovine alpha-lactoalbumin (aLA) and beta-lactoglobulin (bLG) have been examined by hydrogen radicals produced by ultraviolet laser photons, and showed residue specific flexible cleavage at the Asp/Asn/Cys/Ser/Gly residues. Furthermore, evolutionarily homologous proteins aLA and hen egg-white lysozyme (HEL) having very similar secondary and tertiary structures. The treatment of aLA and HEL with DTT/AcOHNH3 resulted in similar degradation behaviors of the backbone N-C and S-S bonds. However, the treatment of aLA with acetic acid and trifluoroacetic acid resulted in unexpected residue-specific degradation at the peptide bond of the Asp, Ser/Thr, Gln and Gly residues, while HEL did not occur such degradation. The study demonstrates the sensitive and resistant of evolutionary homologous proteins aLA and HEL to the acid hydrolysis coming from acidic and basic nature of the proteins.

Academic Significance and Societal Importance of the Research Achievements

タンパク質は生体を形作る最も重要な物質であり、その性質や反応特性を知ることは健康維持の科学的知識として必須である。本研究課題である、複数のジスルフィド結合を持つタンパク質の分析手法の開発では、先端の質量分析技術を用い、当該タンパク質のアミノ酸配列と分解特性を迅速に行うことに成功した。すなわち、数分のうちに当該タンパク質の80残基以上のアミノ酸配列を決定できた。また4本のジスルフィド結合を有する牛乳由来のアルファラクトアルブミンは酢酸など酸性試薬に対し分解耐性が低く容易に分解したが、卵白由来のリゾチームは強い耐性を示し種々環境下でもその抗菌活性を維持し得る性質を持ちうることが判明した。

Report

(4 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • Research Products

    (12 results)

All 2022 2021 2020 2019

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Open Access: 6 results) Presentation (3 results)

  • [Journal Article] Sensitive and resistant of the homologous disulfide-bridged proteins alpha-lactalbumin and lysozyme to attack of hydrogen-atoms, dithiothreitol and trifluoroacetic acid, examine by matrix-assisted laser desorption/ionization mass spectrometry2022

    • Author(s)
      Mitsuo Takayama
    • Journal Title

      Biochemistry and Biophysics Reports

      Volume: 29 Pages: 101212-101212

    • DOI

      10.1016/j.bbrep.2022.101212

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Multiple Hydrogen Loss and Radical-Directed Dissociation of Peptide in MALDI-ISD MS2021

    • Author(s)
      K. Miyazawa, M. Takayama
    • Journal Title

      J. Mass Spectrom. Soc. Jpn.

      Volume: 69 Pages: 1-3

    • NAID

      130007986230

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] MALDI-MS Analysis of Antitumor Antibiotics with Thiol Containing Matrix2021

    • Author(s)
      H. Yoshikwa, M. Takayama
    • Journal Title

      J. Mass Spectrom. Soc. Jpn.

      Volume: 69 Pages: 4-7

    • NAID

      130007986233

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Multiple Hydrogen Loss from [M + H]+ and [a]+ ions of Peptides in MALDI In-Source Decay Using a Dinitro-Substituted Matrix2020

    • Author(s)
      K. Miyazawa, M. Takayama
    • Journal Title

      J. Am. Soc. Mass Spectrom.

      Volume: 31 Issue: 3 Pages: 547-552

    • DOI

      10.1021/jasms.9b00013

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Influence of hydrophilic additives on the signal intensity in electrospray ionization of flavonoid glycosides2020

    • Author(s)
      A. Kegashima, A. Motoyama, M. Takayama
    • Journal Title

      Rapid Commun. Mass Spectrom.

      Volume: 34 Issue: 23 Pages: 1-10

    • DOI

      10.1002/rcm.8914

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Intramolecular hydrogen transfer from the alpha-carbon (Ca) and backbone amide nitrogen (Nb) to form c- and y-ions in negative-ion CID of peptide2019

    • Author(s)
      Asaki Kagoshima, Kanako Sekimoto and Mitsuo Takayama
    • Journal Title

      Journal of the American Society for Mass Spectrometry

      Volume: 30 Issue: 9 Pages: 1592-1600

    • DOI

      10.1007/s13361-019-02245-z

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Residue specific formation of [a]+ ions initiated by the loss of hydrogen from [M+H]+ in high energy CID of peptides2019

    • Author(s)
      S. Sekiya, M. Yamakoshi, S. Iwamoto, K. Tanaka, M. Takayama
    • Journal Title

      Int. J. Mass Spectrom.

      Volume: 445 Pages: 116195-116195

    • DOI

      10.1016/j.ijms.2019.116195

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Estimation of flexible and rigid residues of disulfide-bridged and phosphorylated proteins using matrix-assisted laser desorption/ionization in-source decay mass spectrometry2019

    • Author(s)
      M. Takayama
    • Journal Title

      ACS Omega

      Volume: 4 Issue: 23 Pages: 2030820314-2030820314

    • DOI

      10.1021/acsomega.9b02814

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Residue-specific radical-driven dissociation of peptides using matrix-assisted laser desorption/ionization in-source decay wit hydrogen-donating and abstracting matrices2019

    • Author(s)
      K. Nagoshi and M. Takayama
    • Journal Title

      Int. J. Mass Spectrom.

      Volume: 436 Pages: 2532-2532

    • DOI

      10.1016/j.ijms.2018.11.002

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Presentation] チオール含有マトリックスを用いた抗腫瘍抗生物質のMALDI-MS分析2020

    • Author(s)
      吉川大、高山光男
    • Organizer
      第68回質量分析総合討論会
    • Related Report
      2020 Research-status Report
  • [Presentation] MALDI-ISDにおけるペプチドからの複数水素の脱離とラジカル誘導分解2020

    • Author(s)
      宮澤慶、高山光男
    • Organizer
      第68回質量分析総合討論会
    • Related Report
      2020 Research-status Report
  • [Presentation] 複数のジスルフィド結合を持つタンパク質のMALDI-ISDによる解析2019

    • Author(s)
      綛谷勇貴、名越慶士郎、高山光男
    • Organizer
      第67回質量分析総合討論会
    • Related Report
      2019 Research-status Report

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Published: 2019-04-18   Modified: 2023-01-30  

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