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Role of a novel genomic modification found in a specific clone of Helicobacter cinedi.

Research Project

Project/Area Number 19K07074
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 47030:Pharmaceutical hygiene and biochemistry-related
Research InstitutionNational Institute of Infectious Diseases

Principal Investigator

Rimbara Emiko  国立感染症研究所, 細菌第二部, 室長 (20349822)

Project Period (FY) 2019-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2021: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2020: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2019: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsHelicobacter cinaedi / Phosphorothioate DNA / Phosphorothioate化修飾 / DNA修飾 / メチル化 / Helicobacter / Dnd遺伝子 / Restriction-Modification
Outline of Research at the Start

Helicobacter cinaediは菌血症や蜂窩織炎の原因菌として分離され,院内感染を起こす.申請者は,院内感染事例由来の特定のクローンにはDNAのPhosphorothioate(PT)化修飾を行うdnd遺伝子群が特異的に存在することを見出した.DNAのメチル化修飾は外来DNAから自己のDNAを守るRMシステムの一環であるだけでなく,遺伝子の発現調節を介して病原性や環境適応に寄与している.一方,PT化修飾は近年明らかになったDNA修飾であり,その役割には不明な点が多い.そこで,本研究ではH. cinaediの病原性や環境適応におけるPT化修飾の寄与を明らかにする.

Outline of Final Research Achievements

The contribution of Phosphorothioate (PT) modification to pathogenicity and environmental responsiveness in bacteria is unclear.
We analyzed the PT modification of the dnd gene knockout Helicobacter cinaedi MRY08-1234 strain, and found that 8.9% of all target motifs were PT-modified. Expression of genes encoding DccSR and PtmG was significantly decreased by the dnd gene knockout. In addition, infection experiments with Caco-2 cells showed that knockout of the dnd gene increased cytotoxicity. These results indicate that PT modifications may contribute to environmental adaptation and virulence of H. cinaedi.

Academic Significance and Societal Importance of the Research Achievements

PT化修飾は近年明らかになったばかりの細菌特有のDNA修飾であり、本研究ではPT化修飾が環境応答や病原性に寄与している可能性を示した。Helicobacter cinaediは菌血症や蜂窩織炎の原因となる細菌であり、時に院内感染を引き起こす。今後H. cinaediの菌株間の環境適応能や病原性の違いにおけるPT化修飾の新たな役割が解明されることが期待される。

Report

(6 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • Research Products

    (23 results)

All 2023 2022 2021 2020 2019

All Journal Article (8 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 6 results,  Open Access: 7 results) Presentation (15 results) (of which Int'l Joint Research: 2 results,  Invited: 5 results)

  • [Journal Article] Characterization of HcaA, a novel autotransporter protein in <i>Helicobacter cinaedi</i> , and its role in host cell adhesion2023

    • Author(s)
      Aoki Sae、Mori Shigetarou、Matsui Hidenori、Shibayama Keigo、Kenri Tsuyoshi、Rimbara Emiko
    • Journal Title

      mSphere

      Volume: 8 Issue: 6

    • DOI

      10.1128/msphere.00403-23

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ヒトに感染するHelicobacter属菌について2023

    • Author(s)
      林原 絵美子
    • Journal Title

      日本臨床微生物学会雑誌

      Volume: 33 Pages: 1-11

    • Related Report
      2022 Research-status Report
  • [Journal Article] Characterization of HcaA, a novel autotransporter protein in Helicobacter cinaedi, and its role in host cell adhesion2022

    • Author(s)
      Aoki Sae、Mori Shigetarou、Matsui Hidenori、Shibayama Keigo、Kenri Tsuyoshi、Rimbara Emiko
    • Journal Title

      bioRxiv

      Volume: - Pages: 517170-517170

    • DOI

      10.1101/2022.11.18.517170

    • Related Report
      2022 Research-status Report
    • Open Access
  • [Journal Article] Determining Infected Aortic Aneurysm Treatment Using Focused Detection of Helicobacter cinaedi2022

    • Author(s)
      Jien Saito、Emiko Rimbara、Shingo Inaguma、Chihiro Hasegawa、Shinji Kamiya、Akihiro Mizuno、Yoshiaki Sone、Tatsuhito Ogawa、Yukihide Numata、Satoru Takahashi、Miki Asano
    • Journal Title

      Emerging Infectious Diseases

      Volume: 28 Issue: 7 Pages: 1494-1498

    • DOI

      10.3201/eid2807.212505

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 2 Establishment of a reference panel of Helicobacter pylori strains for antimicrobial susceptibility testing.2022

    • Author(s)
      Kenji Yokota, Takako Osaki, Shunji Hayashi, Shin-Ichi Yokota, Hiroaki Takeuchi, Emiko Rimbara, Hinako Ojima, Toyotaka Sato, Hideo Yonezawa, Keigo Shibayama, Kengo Tokunaga, Shigeru Kamiya, Kazunari Murakami, Mototsugu Kato, Toshiro Sugiyama
    • Journal Title

      Helicobacter

      Volume: Jun;27(3) Issue: 3 Pages: 12874-12874

    • DOI

      10.1111/hel.12874

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Non-Helicobacter pylori Helicobacter (NHPH) positive gastric cancer2022

    • Author(s)
      Yasuda Tomohiko、Lee Hyun Seok、Nam Su Youn、Katoh Hiroto、Ishibashi Yuko、Yamagata Murayama Somay、Matsui Hidenori、Masuda Hiroki、Rimbara Emiko、Sakurazawa Nobuyuki、Suzuki Hideyuki、Yoshida Hiroshi、Seto Yasuyuki、Ishikawa Shumpei、Jeon Seong Woo、Nakamura Masahiko、Nomura Sachiyo
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1 Pages: 1-9

    • DOI

      10.1038/s41598-022-08962-y

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Isolation and characterization of Helicobacter suis from human stomach2021

    • Author(s)
      Rimbara Emiko、Suzuki Masato、Matsui Hidenori、Nakamura Masahiko、Morimoto Misako、Sasakawa Chihiro、Masuda Hiroki、Nomura Sachiyo、Osaki Takako、Nagata Noriyo、Shibayama Keigo、Tokunaga Kengo
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 118 Issue: 13

    • DOI

      10.1073/pnas.2026337118

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Helicobacter suis Strain SNTW101c, Originally Isolated from a Patient with Nodular Gastritis2020

    • Author(s)
      Rimbara Emiko、Suzuki Masato、Matsui Hidenori、Nakamura Masahiko、Kobayashi Hirotaka、Mori Shigetarou、Shibayama Keigo
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9 Issue: 1

    • DOI

      10.1128/mra.01340-19

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Characterization of novel autotransporter protein HcaA in Helicobacter cinaedi2023

    • Author(s)
      青木 沙恵、森 茂太郎、松井 英則、柴山 恵吾、見理 剛、林原 絵美子
    • Organizer
      第96回日本細菌学会総会
    • Related Report
      2023 Annual Research Report
  • [Presentation] Helicobacter cinaedi における新規病原因子の特徴および役割の解明2023

    • Author(s)
      青木 沙恵、森 茂太郎、松井 英則、柴山 恵吾、見理 剛、林原 絵美子
    • Organizer
      第29回日本ヘリコバクター学会 学術集会
    • Related Report
      2023 Annual Research Report
  • [Presentation] Characterization of novel autotransporter protein HcaA in Helicobacter cinaedi2022

    • Author(s)
      Sae Aoki, Shigetarou Mori, Hidenori Matsui, Keigo Shibayama, Tsuyoshi Kenri, Emiko Rimbara
    • Organizer
      第96回日本細菌学会総会
    • Related Report
      2022 Research-status Report
  • [Presentation] Isolation and characterization of non-Helicobacter pylori Helicobacter species infecting human stomach2022

    • Author(s)
      Emiko Rimbara
    • Organizer
      The 21th International Workshop on Campylobacter, Helicobacter and Related Organisms
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Characterization Of Helicobacter Suis Isolated From Human Stomach2022

    • Author(s)
      Rimbara E, Suzuki M, H. Matsui, M. Nakamura, M. Morimoto, C. Sasakawa, H. Masuda, S. Nomura, T. Osaki, N. Nagata, K. Shibayama, K. Tokunaga
    • Organizer
      World Microbe Forum
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research
  • [Presentation] ヒト胃に感染するヘリコバクター・スイスについて2022

    • Author(s)
      林原絵美子
    • Organizer
      第91回日本感染症学会西日本地方会学術集会、第64回日本感染症学会中日本地方会学術集会
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] 3.イヌおよびネコの胃生検組織から分離された2つの新種Helicobacter属菌2022

    • Author(s)
      青木 沙恵、鈴木 仁人,森 茂太郎,柴山 恵吾,大野 耕一,見理 剛,林原 絵美子
    • Organizer
      第104回日本細菌学会関東支部総会
    • Related Report
      2021 Research-status Report
  • [Presentation] Bacterial and genomic characteristics of non-Helicobacter pylori Helicobacter species, including Helicobacter suis2022

    • Author(s)
      Rimbara E, Suzuki M, Tokunaga K, Mabe K, Nanjo S, Aoki S, Matsui H, Ohno K, Shibayama K, Kenri T.
    • Organizer
      第27回日本ヘリコバクター学会学術集会
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] 胃MALTリンパ腫におけるHelicobacter suis感染の関与2020

    • Author(s)
      徳永 健吾 , 林原 絵美子 , 松井 英則 , 鈴木 仁人 , 大崎 敬子 , 井田 陽介 , 三好 佐和子 , 長濱 清隆 , 大野 亜希子 , 三好 潤 , 柴山 恵吾 , 久松 理一 , 岡本 晋
    • Organizer
      第100回日本消化器内視鏡学会総会
    • Related Report
      2020 Research-status Report
  • [Presentation] Helicobacter suis胃粘膜感染と病態発症2020

    • Author(s)
      鈴木 仁人, 林原 絵美子, 松井 英則, 徳永 健吾, 柴山 恵吾
    • Organizer
      日本ヘリコバクター学会第26回学術集会
    • Related Report
      2020 Research-status Report
  • [Presentation] Helicobacter suis SNTW101株の培養成功と完全ゲノム配列の決定2020

    • Author(s)
      林原 絵美子(国立感染症研究所 細菌第二部), 松井 英則, 鈴木 仁人, 中村 正彦, 柴山 恵吾, 徳永 健吾
    • Organizer
      日本ヘリコバクター学会第26回学術集会
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] Antimicrobial resistance in Helicobacter cinaedi2020

    • Author(s)
      林原絵美子、森茂太郎、金玄、鈴木仁人、柴山恵吾
    • Organizer
      第93回日本細菌学会総会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] ヘリコバクター・スイス感染症の診断のための定期健康診断の提案2020

    • Author(s)
      松井 英則, 林原 絵美子, 鈴木 仁人, 柴山 恵吾
    • Organizer
      第93回日本細菌学会総会
    • Related Report
      2019 Research-status Report
  • [Presentation] Helicobacter suis SNTW101株の培養成功と完全ゲノム配列の決定2019

    • Author(s)
      林原絵美子、松井英則、鈴木仁人、中村正彦、柴山恵吾
    • Organizer
      第25回日本ヘリコバ クター学会学術集会
    • Related Report
      2019 Research-status Report
  • [Presentation] 培養、血清抗体を含めた新たな診断法- ヘリコバクター・スイス感染の迅速検査法の開発(II)2019

    • Author(s)
      松井 英則, 林原 絵美子, 鈴木 仁人, 柴山 恵吾, 村山 そう明, 寺尾 秀一, 下山 克, 間部 克裕, 中村 正彦
    • Organizer
      第25回日本ヘリコバ クター学会学術集会
    • Related Report
      2019 Research-status Report

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Published: 2019-04-18   Modified: 2025-01-30  

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