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Analysis of a novel ryanodine receptor modulation mechanism using physiological experiments and molecular dynamics calculations

Research Project

Project/Area Number 19K07306
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 48020:Physiology-related
Research InstitutionJikei University School of Medicine

Principal Investigator

Yamazawa Toshio  東京慈恵会医科大学, 医学部, 教授 (00282616)

Co-Investigator(Kenkyū-buntansha) 村山 尚  順天堂大学, 医学部, 先任准教授 (10230012)
小川 治夫  京都大学, 薬学研究科, 准教授 (40292726)
Project Period (FY) 2019-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2021: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2020: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2019: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsリアノジン受容体 / Ca2+放出 / 悪性高熱症 / カルシウム / 骨格筋 / 熱 / リアノジン / 分子動力学計算
Outline of Research at the Start

リアノジン受容体(RyR)は、300種類以上の点突然変異が同定されており、悪性高熱症(MH)やセントラルコア病(CCD)等の筋疾患を引き起こすと考えられている。しかしたった一つのアミノ酸変異が、この巨大なイオンチャネル蛋白分子の働きを変調する制御機構は未だ不明である。そこで本研究では、分子動力学計算によりチャネルの動的構造を再現し、多様な表現型を示したRyR変異体の特性をチャネル立体構造の側面から検証する。生理実験から得られたチャネル活性と構造生物学的知見を組み合わせることにより、RyRチャネルの作動原理を明らかにすることを目指す。

Outline of Final Research Achievements

Type 1 ryanodine receptor (RyR1) on the sarcoplasmic reticulum membrane is a giant ion channel that exhibits Ca2+-induced Ca2+ release (CICR) properties. However, the mechanism by which a single amino acid substitution alters giant ion channel activity and causes disease is unknown. We performed molecular dynamics (MD) calculations to understand the dynamic structure from the viewpoint of information thermodynamics and proposed that nine different salt/hydrogen bond residue pairs between subdomains are involved in the stability of the domain structure. This hypothesis was supported by functional analysis of disease mutants of RyR1 in physiological experiments.

Academic Significance and Societal Importance of the Research Achievements

本研究成果は、MD計算と生理実験を組み合わせて、RyR1のN末領域内サブドメインの境界でのチャネル機能異常を伴う変異RyR1の構造変化を示した。このようなアプローチは、1アミノ酸残基置換が蛋白全体の構造・機能を変調させる仕組みを理解するためのモデルケースになり得るものと考えられる。また、塩橋/水素結合と点変異のRyR1チャネル機能に関するデータは、変異による病態予測を高精度で行うことが可能となり、患者負担の軽減による社会的な利益も大きいことが期待される。

Report

(5 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • Research Products

    (14 results)

All 2023 2022 2021 2020 2019

All Journal Article (6 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 6 results,  Open Access: 6 results) Presentation (8 results) (of which Int'l Joint Research: 2 results,  Invited: 5 results)

  • [Journal Article] Mice with R2509C-RYR1 mutation exhibit dysfunctional Ca2+ dynamics in primary skeletal myocytes2022

    • Author(s)
      Tsuboi Yoshitaka、Oyama Kotaro、Kobirumaki-Shimozawa Fuyu、Murayama Takashi、Kurebayashi Nagomi、Tachibana Toshiaki、Manome Yoshinobu、Kikuchi Emi、Noguchi Satoru、Inoue Takayoshi、Inoue Yukiko U.、Nishino Ichizo、Mori Shuichi、Ishida Ryosuke、Kagechika Hiroyuki、Suzuki Madoka、Fukuda Norio、Yamazawa Toshiko
    • Journal Title

      Journal of General Physiology

      Volume: 154 Issue: 11

    • DOI

      10.1085/jgp.202213136

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Heat-hypersensitive mutants of ryanodine receptor type 1 revealed by microscopic heating2022

    • Author(s)
      Oyama Kotaro、Zeeb Vadim、Yamazawa Toshiko、Kurebayashi Nagomi、Kobirumaki-Shimozawa Fuyu、Murayama Takashi、Oyamada Hideto、Noguchi Satoru、Inoue Takayoshi、Inoue Yukiko U.、Nishino Ichizo、Harada Yoshie、Fukuda Norio、Ishiwata Shin’ichi、Suzuki Madoka
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 119 Issue: 32

    • DOI

      10.1073/pnas.2201286119

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A novel RyR1-selective inhibitor prevents and rescues sudden death in mouse models of malignant hyperthermia and heat stroke2021

    • Author(s)
      Yamazawa Toshiko、Kobayashi Takuya、Kurebayashi Nagomi、Konishi Masato、Noguchi Satoru、Inoue Takayoshi、Inoue Yukiko U.、et al.
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 4293-4293

    • DOI

      10.1038/s41467-021-24644-1

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Single-cell temperature mapping with fluorescent thermometer nanosheets2020

    • Author(s)
      Oyama Kotaro、Gotoh Mizuho、Hosaka Yuji、Oyama Tomoko G.、Kubonoya Aya、Suzuki Yuma、Arai Tomomi、Tsukamoto Seiichi、Kawamura Yuki、Itoh Hideki、Shintani Seine A.、Yamazawa Toshiko、Taguchi Mitsumasa、Ishiwata Shin’ichi、Fukuda Norio
    • Journal Title

      Journal of General Physiology

      Volume: 152 Issue: 8

    • DOI

      10.1085/jgp.201912469

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Insights into channel modulation mechanism of RYR1 mutants using Ca2+ imaging and molecular dynamics2020

    • Author(s)
      Yamazawa Toshiko、Ogawa Haruo、Murayama Takashi、Yamaguchi Maki、Oyamada Hideto、Suzuki Junji、Kurebayashi Nagomi、Kanemaru Kazunori、Oguchi Katsuji、Sakurai Takashi、Iino Masamitsu
    • Journal Title

      The Journal of General Physiology

      Volume: 152 Issue: 1 Pages: 0-0

    • DOI

      10.1085/jgp.201812235

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Regulatory mechanisms of ryanodine receptor/Ca2+ release channel revealed by recent advancements in structural studies2020

    • Author(s)
      Ogawa Haruo、Kurebayashi Nagomi、Yamazawa Toshiko、Murayama Takashi
    • Journal Title

      Journal of Muscle Research and Cell Motility

      Volume: in press Issue: 2 Pages: 0-0

    • DOI

      10.1007/s10974-020-09575-6

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] nal analysis of type 1 ryanodine receptor in skeletal muscle using a novel animal model2023

    • Author(s)
      山澤德志子
    • Organizer
      日本生理学会第100回記念大会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Dysfunctional muscle thermal signalin2022

    • Author(s)
      山澤德志子
    • Organizer
      45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 分子動力学計算と生理実験によるリアノジン受容体のカルシウム放出機構の解析析2021

    • Author(s)
      山澤 德志子
    • Organizer
      第64回日本神経化学会大会
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] Therapeutic effects of novel type1 ryanodine receptor inhibitor on malignant hyperthermia2021

    • Author(s)
      Toshiko Yamazawa
    • Organizer
      Calcium signaling and excitation-contraction coupling in cardiac, skeletal and smooth muscle; Journal of General Physiolog
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] リアノジン受容体によるカルシウム恒常性異常に関連した筋疾患2021

    • Author(s)
      山澤 德志子
    • Organizer
      第99回日本生理学会大会
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] 新規1型リアノジン受容体阻害薬の筋疾患に対する治療効果2021

    • Author(s)
      山澤徳志子
    • Organizer
      第94回日本薬理学会年会
    • Related Report
      2020 Research-status Report
  • [Presentation] 骨格筋におけるポリアミンの役割2021

    • Author(s)
      山澤徳志子
    • Organizer
      第126回日本解剖学会総会・全国学術集会 第98回 日本生理学会 合同大会
    • Related Report
      2020 Research-status Report
  • [Presentation] 1.Molecular dynamics and Ca2+ imaging of mutant type 1 ryanodine receptors.2019

    • Author(s)
      Yamazawa T, Ogawa H, Murayama T, Yamaguchi M, Oyamada H, Suzuki J, Kurebayashi N, Kanemaru K, Oguchi K, Sakurai T, Iino M
    • Organizer
      Gordon Research Conference  Muscle: Excitation-Contraction Coupling
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research

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Published: 2019-04-18   Modified: 2024-01-30  

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