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Molecular mechanism of the pathogenic protein interaction at the C-terminus of amino acid transporter b0,+AT/SLC7A9 in Japanese-type cystinuria

Research Project

Project/Area Number 19K07373
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 48040:Medical biochemistry-related
Research InstitutionJikei University School of Medicine (2020-2021)
Nara Medical University (2019)

Principal Investigator

Wiriyasermkul Pattama  東京慈恵会医科大学, 医学部, 助教 (80825836)

Co-Investigator(Kenkyū-buntansha) Kongpracha Pornparn (コンプラシャ ポーンパン)  東京慈恵会医科大学, 医学部, ポストドクトラルフェロー (70817767)
Project Period (FY) 2019-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2021: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2020: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2019: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordscystinuria / kidney / amino acid / transporter / structure / biogenesis / calcium / cryo-EM / cystine / Transporter / Cystinuria / Structure / Amino acids / SLC7 / Kidney disease / Cystine / Mutation
Outline of Research at the Start

Cystinuria, a kidney disease characterized by cystine stones, is caused by mutations in cystine transporter b0,+AT or rBAT. Japanese-type cystinuria is caused by P482L, a C-terminal mutation of b0,+AT. We aim to examine the pathogenic mechanism of P482L, which will enlighten a pathogenic feature of transporters and be applied for translational research.

Outline of Final Research Achievements

Amino acid transporter b0,+AT form heterodimer with glycoprotein rBAT to be functional for cystine and dibasic amino acid reabsorption in the kidney. Mutations in either rBAT or b0,+AT cause cystinuria, the renal stone which lead to kidney failure. By state-of-the-art technologies in cryo-electron microscopy and biochemical strategies, we successfully solved the structure of rBAT-b0,+AT. The structure exhibits super-dimer formation of two rBAT-b0,+AT heterodimer. All residues in rBAT-b0,+AT especially the ones responsible for pathogenic mutations were revealed. Getting insight into the transport mechanism of b0,+AT, we have successfully clarified the key residues for the recognition of each type of amino acid substrates. Our finding provides important clues in explaining the molecular pathological mechanisms in cystinuria.

Academic Significance and Societal Importance of the Research Achievements

rBAT-b0,+ATは、ヘテロ二量体アミノ酸トランスポーター(HAT)の一員として、腎臓でのアミノ酸再吸収に重要な役割を果たし、その欠損がシスチン尿症の原因となることが知られている。本研究の最大の成果は、rBAT-b0,+ATの構造および機能発現機構を明らかにしたことである。この発見により、HATの分子生理学的機構と疾患の病理学的機構との出会いが実現し、これまで長い間説明のつかなかったいくつかのシスチン尿症変異の分子病態を明らかになる。原子レベルでトランスポーターを直接標的とする治療法として、新たなトランスレーショナルリサーチが期待される。

Report

(4 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • Research Products

    (16 results)

All 2022 2021 2020 2019

All Journal Article (7 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 6 results,  Open Access: 5 results) Presentation (9 results) (of which Invited: 7 results)

  • [Journal Article] Ca2+-mediated higher-order assembly of heterodimers in amino acid transport system b0,+ biogenesis and cystinuria2022

    • Author(s)
      Lee Yongchan、Wiriyasermkul Pattama、Kongpracha Pornparn、Moriyama Satomi、Mills Deryck J.、Kuhlbrandt Werner、Nagamori Shushi
    • Journal Title

      Nature Communications

      Volume: - Issue: 1 Pages: 2708-2708

    • DOI

      10.1038/s41467-022-30293-9

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Simple but efficacious enrichment of integral membrane proteins and their interactions for in-depth membrane proteomics2022

    • Author(s)
      Kongpracha Pornparn、Wiriyasermkul Pattama、Isozumi Noriyoshi、Moriyama Satomi、Kanai Yoshikatsu、Nagamori Shushi
    • Journal Title

      Molecular & Cellular Proteomics

      Volume: - Issue: 5 Pages: 100206-100206

    • DOI

      10.1016/j.mcpro.2022.100206

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Consensus mutagenesis approach improves the thermal stability of system xc- transporter, xCT, and enables cryo‐EM analyses2020

    • Author(s)
      Oda Kazumasa、Lee Yongchan、Wiriyasermkul Pattama、Tanaka Yoko、Takemoto Mizuki、Yamashita Keitaro、Nagamori Shushi、Nishizawa Tomohiro、Nureki Osamu
    • Journal Title

      Protein Science

      Volume: 29 Issue: 12 Pages: 2398-2407

    • DOI

      10.1002/pro.3966

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Membrane transport proteins in melanosomes: Regulation of ions for pigmentation2020

    • Author(s)
      Wiriyasermkul Pattama、Moriyama Satomi、Nagamori Shushi
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Biomembranes

      Volume: 1862 Issue: 12 Pages: 183318-183318

    • DOI

      10.1016/j.bbamem.2020.183318

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] ヒト栄養素トランスポーターと分子標的創薬研究2020

    • Author(s)
      永森 收志, 森山 理美, パッタマ ウィリヤサムクン
    • Journal Title

      化学と生物

      Volume: 58 Pages: 520-528

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] D-Serine, an emerging biomarker of kidney diseases, is a hidden substrate of sodium-coupled monocarboxylate transporters2020

    • Author(s)
      Wiriyasermkul Pattama、Moriyama Satomi、Tanaka Yoko、Kongpracha Pornparn、Nakamae Nodoka、Suzuki Masataka、Kimura Tomonori、Mita Masashi、Sasabe Jumpei、Nagamori Shushi
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2020.08.10.244822

    • Related Report
      2020 Research-status Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Cryo-EM structure of the human L-type amino acid transporter 1 in complex with glycoprotein CD98hc2019

    • Author(s)
      Lee Yongchan、Wiriyasermkul Pattama、Jin Chunhuan、Quan Lili、Ohgaki Ryuichi、Okuda Suguru、Kusakizako Tsukasa、Nishizawa Tomohiro、Oda Kazumasa、Ishitani Ryuichiro、Yokoyama Takeshi、Nakane Takanori、Shirouzu Mikako、Endou Hitoshi、Nagamori Shushi、Kanai Yoshikatsu、Nureki Osamu
    • Journal Title

      Nature Structural & Molecular Biology

      Volume: 26 Issue: 6 Pages: 510-517

    • DOI

      10.1038/s41594-019-0237-7

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Multi-hierarchical approach unveils unexpected transport proteins for D-serine, a biomarker for kidney injury2022

    • Author(s)
      Wiriyasermkul Pattama
    • Organizer
      Kanazawa University International Web Symposium
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] A combinatorial approach to enlighten hidden substrates of the renowned transporters2021

    • Author(s)
      Wiriyasermkul Pattama
    • Organizer
      第94回日本生化学会大会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Biogenesis and function of rBAT-b0,+AT: a heterodimeric amino acid transporter2021

    • Author(s)
      Wiriyasermkul Pattama、Lee Yongchan、Kuhlbrandt Werner、Nagamori Shushi
    • Organizer
      2021 年度 生理研研究会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Ca2+を介した高次構造形成は、ヘテロ二量体アミノ酸トランスポーター b0,+AT-rBATの 生合成において重要なステップである2021

    • Author(s)
      Wiriyasermkul Pattama、Lee Yongchan、Kongpracha Pornparn、Kuhlbrandt Werner、Nagamori Shushi
    • Organizer
      第 138 回成医会総会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Function and structure of heterodimeric amino acid transporters: toward the understanding of their physiological properties and pharmaceutical relevance2020

    • Author(s)
      Wiriyasermkul P, Nagamori S
    • Organizer
      The 140th Annual Meeting of the Pharmaceutical Society of Japan
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Function and structure of heterodimeric amino acid transporters2020

    • Author(s)
      Wiriyasermkul P, Nagamori S.
    • Organizer
      Ron Kaback博士追悼記念 第二回細胞形成研究会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Combination of structural and biochemical approaches reveals transport mechanism of Nucleobase/ascorbate transporter2019

    • Author(s)
      Wiriyasermkul P, Quick M
    • Organizer
      The 92nd annual meeting of the Japanese Biochemical Society
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Function and structure of heterodimeric amino acid transporters2019

    • Author(s)
      Wiriyasermkul P, Nagamori S
    • Organizer
      生体コモンスペース研究会
    • Related Report
      2019 Research-status Report
  • [Presentation] Proteomics and phosphoproteomics of brain organoids2019

    • Author(s)
      Wiriyasermkul P, Nagamori S
    • Organizer
      ASUKA symposium
    • Related Report
      2019 Research-status Report
    • Invited

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Published: 2019-04-18   Modified: 2023-01-30  

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