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The development of peptide tethered cNDI cluster for specifically targeting telomeric tetraplex DNA

Research Project

Project/Area Number 19K15700
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 37010:Bio-related chemistry
Research InstitutionKyushu Institute of Technology

Principal Investigator

ZOU TINGTING  九州工業大学, 大学院工学研究院, 特任助教 (30828637)

Project Period (FY) 2019-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2020: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
KeywordsG-quadruplex / naphthalene diimide / peptide linker / cluster / DNA四本鎖 / クラスター / 環状ナフタレンジイミド / ペプチドリンカー
Outline of Research at the Start

効果的な抗がん剤の開発を目指し、テロメア領域で形成可能な複数のGquadruplex(DNA四本鎖)構造を標的とする新規なG4リガンドクラスターの設計及び性能評価を行う。本提案のG4リガンドクラスターを構築するため、初めてペプチド合成ユニットのアミノ酸に環状ナフタレンジイミド(cNDI)を導入することによって、ペプチド合成装置を用いてペプチド鎖に複数のcNDIを導入する。新規cNDIクラスターは選択的にテロメア領域の複数のG-quadruplexと結合することが期待されている。

Outline of Final Research Achievements

In this study, (1) we firstly employed peptide as the linker part to construct novel ligand cluster, cyclic naphthalene diimide was adopted as the base G4 ligand unit, which showed preference for G-quadruplex recognition; several pep-cNDI dimers were newly synthesized; (2) then we confirmed that pep-cNDI dimers showed enhanced preference for recognizing and stabilizing mono G-quadruplex than cNDI monomer, within the determination by CD-based Tm measurement and ITC-based binding affinity assay; (3) finally we adopted ESI-MS to analyze the binding property of pep-cNDI dimers with G-quadruplex, the results suggested that two pep-cNDI dimers prefer to bind to one G-quadruplex structure and form a much more stable complex

Academic Significance and Societal Importance of the Research Achievements

We firstly adopted peptide as linker part for constructing G4 ligand cluster, and confirmed the high potentiality of peptide as linker, which could enrich the development of new group of G4 ligands.

Report

(3 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • Research Products

    (12 results)

All 2020 2019

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 3 results) Presentation (9 results) (of which Int'l Joint Research: 4 results)

  • [Journal Article] The Interaction of Cyclic Naphthalene Diimide with G-Quadruplex under Molecular Crowding Condition2020

    • Author(s)
      Tingting Zou, Shinobu Sato, Rui Yasukawa, Ryusuke Takeuchi, Shunsuke Ozaki, Satoshi Fujii, Shigeori Takenaka
    • Journal Title

      Molecules

      Volume: 25 Issue: 3 Pages: 668-668

    • DOI

      10.3390/molecules25030668

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cyclic Naphthalene Diimide with a Ferrocene Moiety as a Redox‐Active Tetraplex‐DNA Ligand2020

    • Author(s)
      Shuma Kaneyoshi Tingting Zou Shunsuke Ozaki Ryusuke Takeuchi Ayano Udou Takumi Nakahara Kazuhisa Fujimoto Satoshi Fujii Shinobu Sato Shigeori Takenaka
    • Journal Title

      Chemistry A European Journal

      Volume: 26 Issue: 1 Pages: 139-142

    • DOI

      10.1002/chem.201903883

    • NAID

      120007026470

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cyclic Naphthalene Diimide Dimer with a Strengthened Ability to Stabilize Dimeric G‐Quadruplex2019

    • Author(s)
      Ryusuke Takeuchi, Tingting Zou, Daiki Wakahara, Yoshifumi Nakano, Shinobu Sato, Shigeori Takenaka
    • Journal Title

      Chemistry-A European Journal

      Volume: 25 Issue: 37 Pages: 8691-8695

    • DOI

      10.1002/chem.201901468

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] G-quadruplexを標的とする環状ナフタレンジイミド二量体の創成と評価2020

    • Author(s)
      Tingting ZOU, 竹内 龍佑, 佐藤 しのぶ, 竹中 繁織
    • Organizer
      14回バイオ関連シンポジウム
    • Related Report
      2020 Annual Research Report
  • [Presentation] Cyclic anthraquinones selectively recognize G-quadruplex structure and inhibit cancer cell proliferation2019

    • Author(s)
      Tingting Zou, Daiki Wakahara,Shinobu Sato, and Shigeori Takenaka
    • Organizer
      日本分析化学会第68年会
    • Related Report
      2019 Research-status Report
  • [Presentation] Cyclic anthraquinones selectively recognize G-quadruplex structure and inhibit cancer cell proliferation2019

    • Author(s)
      Tingting Zou, Daiki Wakahara,Shinobu Sato, Hikaru Fukuda,Hiroshi Takeuchi, Kazuhiro Tominaga,andShigeori Takenaka
    • Organizer
      The 7th International Meeting on Quadruplex Nucleic Acids
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Cyclic naphthalene diimide derivatives as a novel group of tetraplex DNA ligand2019

    • Author(s)
      Tingting Zou, Ryusuke Takeuchi,Shinobu Sato, Hikaru Fukuda,Hiroshi Takeuchi, Kazuhiro Tominaga,andShigeori Takenaka
    • Organizer
      日本核酸化学会設立記念国際シンポジウム
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Cyclic naphthalene diimide derivatives as a novel group of tetraplex DNA ligand2019

    • Author(s)
      Tingting Zou, Ryusuke Takeuchi, Rui Yasukawa, Shinobu Sato, and Shigeori Takenaka
    • Organizer
      7th China-Japan Symposium on Nanomedicine
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 新規テロメアDNA識別分子と4本鎖DNAとの相互作用解析2019

    • Author(s)
      竹内 龍佑, Zou Tingting, 佐藤 しのぶ, 竹中 繁織
    • Organizer
      日本分析化学会第68年会
    • Related Report
      2019 Research-status Report
  • [Presentation] Electrochemical G-qurdaruplex DNA detection based on cyclic ferrocentynaphthalene diimde2019

    • Author(s)
      Shigeori Takenaka, Shuma Kaneyoshi, Tingting Zou, Shinobu Sato, Satoshi Fujii, Kazuhisa Fujimoto
    • Organizer
      The 7th International Meeting on Quadruplex Nucleic Acids
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] G4クラスター識別分子としての環状ナフタレンジイミドダイマーの合成2019

    • Author(s)
      竹内 龍佑, Zou Tingting, 佐藤 しのぶ, 竹中 繁織
    • Organizer
      第29回バイオ・高分子シンポジウム
    • Related Report
      2019 Research-status Report
  • [Presentation] 環状ナフタレンジイミドのmolecular crowding条件下での4本鎖DNAとの相互作用解析2019

    • Author(s)
      竹中 繁織, 安川 瑠依, 竹内 龍佑, Zou Tingting, 佐藤 しのぶ
    • Organizer
      第29回バイオ・高分子シンポジウム
    • Related Report
      2019 Research-status Report

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Published: 2019-04-18   Modified: 2023-01-30  

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