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Metabolic engineering and synthetic biological utilization of coryneform bacteria aiming to expand its versatility as a production host

Research Project

Project/Area Number 19K15736
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 38020:Applied microbiology-related
Research InstitutionYamaguchi University

Principal Investigator

Kataoka Naoya  山口大学, 大学研究推進機構, 助教 (50713509)

Project Period (FY) 2019-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2021: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2020: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2019: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords2-オキソグルタル酸 / 2-ヒドロキシグルタル酸 / フェニルアラニン / チロシン / リボヌクレアーゼ / アナプレロティック経路 / 抑制変異株 / フィードバック制御 / ホスホエノールピルビン酸 / プレフェン酸脱水素酵素 / クエン酸合成酵素 / コリネ型細菌 / α-ケトグルタル酸 / シキミ酸経路 / フェニルプロパノイド / アセチルCoA / ピルビン酸脱水素酵素複合体 / 2-オキソグルタル酸脱水素酵素複合体
Outline of Research at the Start

本研究では, コリネ型細菌Corynebacterium glutamicumの代謝上の特徴である頑強なTCA回路を, 代謝工学的なアプローチにより合理的に制御することで, アセチルCoA, α-ケトグルタル酸派生物の合成生物学的手法による生産を実証することを目的としている。本研究により得られる知見は, C. glutamicumの生産宿主としての汎用性のさらなる拡大に貢献すると期待される。

Outline of Final Research Achievements

To realize the production of 2-oxoglutarate-related compounds in Corynebacterium glutamicum, the culture conditions to induce the production of 2-oxoglutarate was firstly explored. The recombinant C. glutamicum overexpressing the hgd gene encoding 2-hydroxyglutarate dehydrogenase produced 2-hydroxyglutarate efficiently when cultured in the optimized 2-oxoglutarate production-inducing conditions. In addition, the efficient phenylalanine-producing C. glutamicum was successfully developed by three steps of metabolic engineering: (i) utilization of feedback resistant enzymes, (ii) redirection of carbon flow to tyrosine to phenylalanine and analysis of suppressor mutations, and (iii) modifications of phosphoenolpyruvate-pyruvate metabolism.

Academic Significance and Societal Importance of the Research Achievements

本研究では, 再生可能資源から2-ヒドロキシグルタル酸およびフェニルアラニンを高生産可能なコリネ型細菌を造成した。まず2-ヒドロキシグルタル酸は, 2-オキソグルタル酸から誘導される有用化合物の一つであり, これまで報告例の少なかったコリネ型細菌での2-オキソグルタル酸派生物の生産を実現した点で意義がある。一方フェニルアラニンは, 植物二次代謝産物の生合成における重要中間体であることから, 本研究で開発した組換えコリネ型細菌を基盤にさらなる改変を行うことで, コリネ型細菌での植物二次代謝産物の高生産の実現が期待される点で意義がある。

Report

(4 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • Research Products

    (35 results)

All 2022 2021 2020 2019 Other

All Int'l Joint Research (2 results) Journal Article (16 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 16 results) Presentation (17 results) (of which Invited: 1 results)

  • [Int'l Joint Research] チュラロンコン大学(タイ)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] チュラロンコン大学(タイ)

    • Related Report
      2019 Research-status Report
  • [Journal Article] Characterization of 3 phylogenetically distinct membrane-bound D-gluconate dehydrogenases of Gluconobacter spp. and their biotechnological application for efficient 2-keto-D-gluconate production2022

    • Author(s)
      Kataoka Naoya、Saichana Natsaran、Matsutani Minenosuke、Toyama Hirohide、Matsushita Kazunobu、Yakushi Toshiharu
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 86 Issue: 5 Pages: 681-690

    • DOI

      10.1093/bbb/zbac024

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Dissection and Reconstitution Provide Insights into Electron Transport in the Membrane-Bound Aldehyde Dehydrogenase Complex of Gluconacetobacter diazotrophicus2022

    • Author(s)
      Miah Roni、Nina Shun、Murate Takeru、Kataoka Naoya、Matsutani Minenosuke、Ano Yoshitaka、Matsushita Kazunobu、Yakushi Toshiharu
    • Journal Title

      Journal of Bacteriology

      Volume: 204 Issue: 3 Pages: 1-15

    • DOI

      10.1128/jb.00558-21

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Potassium ion leakage impairs thermotolerance in Corynebacterium glutamicum2022

    • Author(s)
      Kataoka Naoya、Matsutani Minenosuke、Murata Ryutarou、Koga Ryo、Nantapong Nawarat、Yakushi Toshiharu、Matsushita Kazunobu
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 133 Issue: 2 Pages: 119-125

    • DOI

      10.1016/j.jbiosc.2021.10.005

    • NAID

      210000159460

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Relocation of dehydroquinate dehydratase to the periplasmic space improves dehydroshikimate production with Gluconobacter oxydans strain NBRC32442021

    • Author(s)
      Nakamura Kentaro、Nagaki Kakeru、Matsutani Minenosuke、Adachi Osao、Kataoka Naoya、Ano Yoshitaka、Theeragool Gunjana、Matsushita Kazunobu、Yakushi Toshiharu
    • Journal Title

      Applied Microbiology and Biotechnology

      Volume: 105 Issue: 14-15 Pages: 5883-5894

    • DOI

      10.1007/s00253-021-11476-8

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The 5-Ketofructose Reductase of Gluconobacter sp. Strain CHM43 Is a Novel Class in the Shikimate Dehydrogenase Family2021

    • Author(s)
      Nguyen Thuy Minh、Goto Masaru、Noda Shohei、Matsutani Minenosuke、Hodoya Yuki、Kataoka Naoya、Adachi Osao、Matsushita Kazunobu、Yakushi Toshiharu
    • Journal Title

      Journal of Bacteriology

      Volume: 203 Issue: 19 Pages: 1-18

    • DOI

      10.1128/jb.00558-20

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Thermal adaptation of acetic acid bacteria for practical high-temperature vinegar fermentation2021

    • Author(s)
      Matsumoto Nami、Osumi Naoki、Matsutani Minenosuke、Phathanathavorn Theerisara、Kataoka Naoya、Theeragool Gunjana、Yakushi Toshiharu、Shiraishi Yasushi、Matsushita Kazunobu
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 85 Issue: 5 Pages: 1243-1251

    • DOI

      10.1093/bbb/zbab009

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Three ATP-dependent phosphorylating enzymes in the first committed step of dihydroxyacetone metabolism in Gluconobacter thailandicus NBRC32552021

    • Author(s)
      Kataoka Naoya、Hirata Kaori、Matsutani Minenosuke、Ano Yoshitaka、Nguyen Thuy Minh、Adachi Osao、Matsushita Kazunobu、Yakushi Toshiharu
    • Journal Title

      Applied Microbiology and Biotechnology

      Volume: 105 Issue: 3 Pages: 1227-1236

    • DOI

      10.1007/s00253-021-11092-6

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] Major aldehyde dehydrogenase AldFGH of Gluconacetobacter diazotrophicus is independent of pyrroloquinoline quinone but dependent on molybdopterin for acetic acid fermentation2021

    • Author(s)
      Miah Roni、Nina Shun、Murate Takeru、Kataoka Naoya、Matsutani Minenosuke、Matsushita Kazunobu、Yakushi Toshiharu
    • Journal Title

      Applied Microbiology and Biotechnology

      Volume: 105 Issue: 6 Pages: 2341-2350

    • DOI

      10.1007/s00253-021-11144-x

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Characterization of a cryptic, pyrroloquinoline quinone-dependent dehydrogenase of Gluconobacter sp. strain CHM432021

    • Author(s)
      Nguyen Thuy Minh、Naoki Kotone、Kataoka Naoya、Matsutani Minenosuke、Ano Yoshitaka、Adachi Osao、Matsushita Kazunobu、Yakushi Toshiharu
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 85 Issue: 4 Pages: 998-1004

    • DOI

      10.1093/bbb/zbab005

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] The membrane-bound sorbosone dehydrogenase of Gluconacetobacter liquefaciens is a pyrroloquinoline quinone-dependent enzyme2020

    • Author(s)
      Toshiharu Yakushi, Ryota Takahashi, Minenosuke Matsutani, Naoya Kataoka, Roque A. Hours, Yoshitaka Ano, Osao Adachi, Kazunobu Matsushita
    • Journal Title

      Enzyme and Microbial Technology

      Volume: 137 Pages: 109511-109511

    • DOI

      10.1016/j.enzmictec.2020.109511

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 5-Keto-D-fructose production from sugar alcohol by isolated wild strain Gluconobacter frateurii CHM 432020

    • Author(s)
      Adachi Osao、Nguyen Thuy M、Hours Roque A、Kataoka Naoya、Matsushita Kazunobu、Akakabe Yoshihiko、Yakushi Toshiharu
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 84 Issue: 8 Pages: 1745-1747

    • DOI

      10.1080/09168451.2020.1767500

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Taro koji of Amorphophallus konjac enabling hydrolysis of konjac polysaccharides to various biotechnological interest2020

    • Author(s)
      Adachi Osao、Hours Roque A、Akakabe Yoshihiko、Arima Hideyuki、Taneba Rie、Tanaka Junya、Kataoka Naoya、Matsushita Kazunobu、Yakushi Toshiharu
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 84 Issue: 10 Pages: 2160-2173

    • DOI

      10.1080/09168451.2020.1787812

    • NAID

      40022817283

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The Auxiliary NADH Dehydrogenase Plays a Crucial Role in Redox Homeostasis of Nicotinamide Cofactors in the Absence of the Periplasmic Oxidation System in Gluconobacter oxydans NBRC32932020

    • Author(s)
      Sriherfyna Feronika Heppy、Matsutani Minenosuke、Hirano Kensuke、Koike Hisashi、Kataoka Naoya、Yamashita Tetsuo、Nakamaru-Ogiso Eiko、Matsushita Kazunobu、Yakushi Toshiharu
    • Journal Title

      Applied and Environmental Microbiology

      Volume: 87 Issue: 2 Pages: 1-14

    • DOI

      10.1128/aem.02155-20

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Comparative Genomic Analysis of Closely Related Acetobacter pasteurianus Strains Provides Evidence of Horizontal Gene Transfer and Reveals Factors Necessary for Thermotolerance2020

    • Author(s)
      Matsutani Minenosuke、Matsumoto Nami、Hirakawa Hideki、Shiwa Yuh、Yoshikawa Hirofumi、Okamoto-Kainuma Akiko、Ishikawa Morio、Kataoka Naoya、Yakushi Toshiharu、Matsushita Kazunobu
    • Journal Title

      Journal of Bacteriology

      Volume: 202 Issue: 8 Pages: 1-19

    • DOI

      10.1128/jb.00553-19

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] The effect of reactive oxygen species (ROS) and ROS-scavenging enzymes, superoxide dismutase and catalase, on the thermotolerant ability of Corynebacterium glutamicum2019

    • Author(s)
      Nantapong Nawarat、Murata Ryutarou、Trakulnaleamsai Sarvitr、Kataoka Naoya、Yakushi Toshiharu、Matsushita Kazunobu
    • Journal Title

      Applied Microbiology and Biotechnology

      Volume: 103 Issue: 13 Pages: 5355-5366

    • DOI

      10.1007/s00253-019-09848-2

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] In vitro thermal adaptation of mesophilic Acetobacter pasteurianus NBRC 3283 generates thermotolerant strains with evolutionary trade-offs2019

    • Author(s)
      Matsumoto Nami、Matsutani Minenosuke、Azuma Yoshinao、Kataoka Naoya、Yakushi Toshiharu、Matsushita Kazunobu
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 84 Issue: 4 Pages: 832-841

    • DOI

      10.1080/09168451.2019.1703638

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Presentation] Acinetobacter baylyi由来ペリプラズム型デヒドロシキミ酸脱水酵素の異種発現とプロトカテク酸生産への利用2022

    • Author(s)
      永木 翔, 松谷 峰之介, 片岡 尚也, 松下 一信, 藥師 寿治
    • Organizer
      日本農芸化学会 2022年度大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 高温酢酸発酵におけるストレス耐性と膜小胞生成2022

    • Author(s)
      松下 一信, 水町 優希, 片岡 尚也, 藥師 寿治
    • Organizer
      日本農芸化学会 2022年度大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] フェニルアラニン高生産に向けたコリネ型細菌の代謝工学2021

    • Author(s)
      片岡 尚也, 加藤 瑠華, 谷口 和彌, 松谷 峰之介, 松下 一信, 藥師 寿治
    • Organizer
      第73回 日本生物工学会大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 酢酸菌Acetobacter pasteurianus SKU1108の耐熱化育種株TH-3の耐熱化機構解析2021

    • Author(s)
      松本 奈実, 松谷 峰之介, 片岡 尚也, 藥師 寿治, 松下 一信
    • Organizer
      日本農芸化学会 2021年度大会
    • Related Report
      2020 Research-status Report
  • [Presentation] キナ酸からプロトカテク酸を産生するための酢酸菌のペリプラズミック代謝工学2021

    • Author(s)
      永木 翔, 松谷 峰之介, 片岡 尚也, 松下 一信, 藥師 寿治
    • Organizer
      日本農芸化学会 2021年度大会
    • Related Report
      2020 Research-status Report
  • [Presentation] グルコノバクター属酢酸菌の膜結合型グルコース脱水素酵素によるラクトビオン酸生産と二糖類酸化の改善2021

    • Author(s)
      内田 侑里, Toulaphone Keokene, 片岡 尚也, 松下 一信, 薬師 寿治
    • Organizer
      日本農芸化学会 2021年度大会
    • Related Report
      2020 Research-status Report
  • [Presentation] Gluconobacter japonicus NBRC 3271を宿主とした効率的5-ケトグルコン酸生産技術の開発2021

    • Author(s)
      直木 琴音, 片岡 尚也, 藥師 寿治, 松下 一信
    • Organizer
      日本農芸化学会 2021年度大会
    • Related Report
      2020 Research-status Report
  • [Presentation] 細胞膜結合型D-マンノース異性化酵素の発見と異性化糖の新しい製造法2021

    • Author(s)
      足立 収生, 片岡 尚也, 松下 一信, 赤壁 善彦, 薬師 寿治
    • Organizer
      日本農芸化学会 2021年度大会
    • Related Report
      2020 Research-status Report
  • [Presentation] 合成生物学的手法による有用物質の効率的生産に関する研究2020

    • Author(s)
      片岡 尚也
    • Organizer
      日本生物工学会 西日本支部大会2020 (第5回講演会)
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] 酢酸菌の耐熱化育種とストレス耐性機能2020

    • Author(s)
      松下 一信, 松本 奈実, 松谷 峰之介, 片岡 尚也, 藥師 寿治
    • Organizer
      日本農芸化学会2020年度大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 酢酸菌Acetobacter pasteurianusとKomagataeibacter medellinensisにおける共通の耐熱化機構の解析2020

    • Author(s)
      松本 奈実, 水町 優希, 松谷 峰之介, 片岡 尚也, 藥師 寿治, 松下 一信
    • Organizer
      日本農芸化学会2020年度大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 酢酸菌を用いるペリプラズミック代謝工学の試み2020

    • Author(s)
      中村 謙太郎, 永木 翔, 松谷 峰之介, 片岡 尚也, 松下 一信, 足立 収生, 薬師 寿治
    • Organizer
      日本農芸化学会2020年度大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 蒟蒻芋麹による蒟蒻マンナンの加水分解と多様な用途開発2020

    • Author(s)
      足立 収生, 有馬 秀幸, 種場 理絵, 田中 淳也, 片岡 尚也, 赤壁 善彦, 松下 一信, 薬師 寿治
    • Organizer
      日本農芸化学会2020年度大会
    • Related Report
      2019 Research-status Report
  • [Presentation] Gluconobacter属酢酸菌の膜結合型グルコース脱水素酵素の高発現によるラクトースの高速酸化2019

    • Author(s)
      Toulaphone Keokene, 内田 侑里, 桐生 高明, 松谷 峰之介, 片岡 尚也, 松下 一信, 薬師 寿治
    • Organizer
      日本農芸化学会2019年度大会
    • Related Report
      2019 Research-status Report
  • [Presentation] Gluconobacter japonicus NBRC 3271が持つ膜結合型グルコン酸脱水素酵素に関する研究2019

    • Author(s)
      片岡 尚也, 大田 諒子, Natsaran Saichana, 松谷 峰之介, 外山 博英, 藥師 寿治, 松下 一信
    • Organizer
      日本農芸化学会2019年度大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 実用的酢酸発酵を目指したAcetobacter pasteurianusの低栄養育種と高温適応育種2019

    • Author(s)
      松本 奈実, 大澄 直樹, Theerisara Phathanathavorn, 末吉 里帆, 松谷 峰之介, 片岡 尚也, 藥師 寿治, Gunjana Theeragool, 白石 靖, 松下 一信
    • Organizer
      日本農芸化学会2019年度大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 高温育種酢酸菌Acetobacter pasteurianus TH-3の細胞表層及びアミノ酸代謝と耐熱化機構2019

    • Author(s)
      上利 浩輝, 中西 里菜, 松本 奈実, 片岡 尚也, 藥師 寿治, 松下 一信
    • Organizer
      日本農芸化学会2019年度大会
    • Related Report
      2019 Research-status Report

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Published: 2019-04-18   Modified: 2023-01-30  

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