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Identification and characterization of novel virulence factors of Staphylococcus aureus USA300 using silkworm model.

Research Project

Project/Area Number 19K16653
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 49050:Bacteriology-related
Research InstitutionHokkaido University (2020-2021)
Teikyo University (2019)

Principal Investigator

Paudel Atmika  北海道大学, 人獣共通感染症国際共同研究所, 助教 (80832774)

Project Period (FY) 2019-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2020: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2019: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordspathogenesis / virulence / virulence factor / silkworm / infection / Bombyx mori / Bacillus cereus / Staphylococcus aureus / pathogenecity / host-pathogen / silkworm infection model / Pathogenicity / anti-infective agents
Outline of Research at the Start

The research will include the characterization of the proteins of S. aureus involved in pathogenesis. The elucidated functions of the proteins can then be exploited as the novel targets for the development of novel anti-infective agents. Besides availability of novel antimicrobial agents against multidrug-resistant S. aureus, the added advantage of such agents is selectiveness towards pathogen exerting lower pressure to S. aureus itself, hence, chances of emergence of resistance to such agents are low and spare the host microbiota.

Outline of Final Research Achievements

We screened Nebraska Transposon Mutant Library of USA300 and found that 8 mutants with reduced virulence in silkworm and mice infection models. The pathogenicity was not restored by introduction of one of the genes: yjbI, while the introduction of the downstream gene yjbH complemented the pathogenicity in silkworms and mice. RNA-seq analysis of yjbI::Tn and yjbH::Tn mutants revealed that disruption of both genes significantly affected the expression of > 200 genes including downregulation of several virulence genes. We,theb, established silkworm infection models of Bacillus anthracis and B. cereus. Constructing a mutant library of Bacillus cereus, we found one gene X to have role in virulence in silkworm. We then used the mutants with transposon inserted in the gene X from the NTML library of S. aureus and found that the disruption of the gene X made S. aureus hyper virulent. Thus, we found that although the gene was conserved among S. aureus and B. cereus and had role in virulence.

Academic Significance and Societal Importance of the Research Achievements

The research identified novel virulence factors of a Gram-positive bacteria, methicillin-resistant Staphylococcus aureus, using silkworm infection model and deepened our understanding of its pathogenicity.

Report

(4 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • Research Products

    (33 results)

All 2022 2021 2020 2019 Other

All Int'l Joint Research (6 results) Journal Article (22 results) (of which Int'l Joint Research: 22 results,  Peer Reviewed: 20 results,  Open Access: 22 results) Presentation (5 results) (of which Int'l Joint Research: 2 results)

  • [Int'l Joint Research] University of Veterinary Medicine(オーストリア)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] Columbia University Medical Center(米国)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] Justus-Liebig-University Giessen(ドイツ)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] Sustainable Study and Research Institute/Patan Academy of Health Sciences/Sahid Gangalal National Heart Center(ネパール)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] Tribhuvan University Teaching Hospital(ネパール)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] vetmeduni Vienna(オーストリア)

    • Related Report
      2019 Research-status Report
  • [Journal Article] Complete Genome Sequences of 24 Strains of Bacillus cereus Isolated from Nosocomial Infection and Bacteremia Cases in Japan2022

    • Author(s)
      Furuta Yoshikazu、Tsujinouchi Mai、Shawa Misheck、Zorigt Tuvshinzaya、Miyajima Yuya、Paudel Atmika、Suzuki Satowa、Higashi Hideaki
    • Journal Title

      Microbiology Resource Announcements

      Volume: 11 Issue: 4

    • DOI

      10.1128/mra.01203-21

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Clonal relationship between multidrug-resistant Escherichia coli ST69 from poultry and humans in Lusaka, Zambia2022

    • Author(s)
      Shawa Misheck、Furuta Yoshikazu、Paudel Atmika、Kabunda O'Brian、Mulenga Evans、Mubanga Maron、Kamboyi Harvey、Zorigt Tuvshinzaya、Chambaro Herman、Simbotwe Manyando、Hang'ombe Bernard、Higashi Hideaki
    • Journal Title

      FEMS Microbiology Letters

      Volume: 368 Pages: 21-24

    • DOI

      10.1093/femsle/fnac004

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Novel pathogenic mucorales identified using the silkworm infection model2021

    • Author(s)
      Panthee Suresh、Hamamoto Hiroshi、Nishiyama Yayoi、Paudel Atmika、Sekimizu Kazuhisa
    • Journal Title

      Journal of Fungi

      Volume: 7 Issue: 11 Pages: 995-995

    • DOI

      10.3390/jof7110995

    • URL

      https://localhost/en/publications/5880998b-44c4-4383-bbe3-4948270ac288

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Serum apolipoprotein A-I potentiates the therapeutic efficacy of lysocin E against Staphylococcus aureus2021

    • Author(s)
      Hiroshi Hamamoto*, Suresh Panthee*, Atmika Paudel, Kenichi Ishii, Jyunichiro Yasukawa, Su Jie, Atsushi Miyashita, Hiroaki Itoh, Kotaro Tokumoto, Masayuki Inoue, Kazuhisa Sekimizu
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 6364-6364

    • DOI

      10.1038/s41467-021-26702-0

    • URL

      https://localhost/en/publications/bb5a5819-3913-4622-8bb4-2c4cc7ace59f

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Comparative analysis of COVID‐19 case fatality rate between two waves in Nepal2021

    • Author(s)
      GC Sulochan、Khanal Ashok、Paudel Atmika、GC Vijay S.、Khanal Aashis、Panthee Suresh
    • Journal Title

      Influenza and Other Respiratory Viruses

      Volume: 16 Issue: 2 Pages: 186-189

    • DOI

      10.1111/irv.12922

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Silkworm model for Bacillus anthracis infection and virulence determination2021

    • Author(s)
      Paudel Atmika、Furuta Yoshikazu、Higashi Hideaki
    • Journal Title

      Virulence

      Volume: 12 Issue: 1 Pages: 2285-2295

    • DOI

      10.1080/21505594.2021.1965830

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Direct Regulons of AtxA, the Master Virulence Regulator of Bacillus anthracis2021

    • Author(s)
      Furuta Yoshikazu、Cheng Cheng、Zorigt Tuvshinzaya、Paudel Atmika、Izumi Shun、Tsujinouchi Mai、Shimizu Tomoko、Meijer Wim G.、Higashi Hideaki
    • Journal Title

      mSystems

      Volume: 6 Issue: 4

    • DOI

      10.1128/msystems.00291-21

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Novel chromosomal insertions of ISEcp1-bla CTX-M-15 and diverse antimicrobial resistance genes in Zambian clinical isolates of Enterobacter cloacae and Escherichia coli2021

    • Author(s)
      Misheck Shawa; Yoshikazu Furuta; Gillan Mulenga; Maron Mubanga; Evans Mulenga; Tuvshinzaya Zorigt; Christone Kaile; Manyando Simbotwe; Atmika Paudel; Bernard Hang’ombe; Hideaki HIGASHI
    • Journal Title

      Antimicrobial Resistance & Infection Control

      Volume: 印刷中 Issue: 1 Pages: 79-79

    • DOI

      10.1186/s13756-021-00941-8

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Complete genome sequence and comparative genomic analysis of Enterococcus faecalis EF-2001, a probiotic bacterium2021

    • Author(s)
      Panthee Suresh、Paudel Atmika、Hamamoto Hiroshi、Ogasawara Akihiko Ano、Iwasa Toshihiro、Blom Jochen、Sekimizu Kazuhisa
    • Journal Title

      Genomics

      Volume: 113 Issue: 3 Pages: 1534-1542

    • DOI

      10.1016/j.ygeno.2021.03.021

    • Related Report
      2021 Annual Research Report 2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] YjbH regulates virulence genes expression and oxidative stress resistance in Staphylococcus aureus2021

    • Author(s)
      Paudel Atmika、Panthee Suresh、Hamamoto Hiroshi、Grunert Tom、Sekimizu Kazuhisa
    • Journal Title

      Virulence

      Volume: 12 Issue: 1 Pages: 470-480

    • DOI

      10.1080/21505594.2021.1875683

    • Related Report
      2021 Annual Research Report 2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Novel chromosomal insertions of ISEcp1-blaCTX-M-15 and diverse antimicrobial resistance genes in Zambian clinical isolates of Enterobacter cloacae and Escherichia coli2021

    • Author(s)
      Misheck Shawa, Yoshikazu Furuta, Gillan Mulenga, Maron Mubanga, Evans Mulenga, Tuvshinzaya Zorigt, Christone Kaile, Manyando Simbotwe, Atmika Paudel, Bernard Hang’ombe, Hideaki HIGASHI
    • Journal Title

      BMC Antimicrobial Resistance & Infection Control

      Volume: accepted

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A simple artificial diet available for research of silkworm disease models2020

    • Author(s)
      Paudel Atmika、Panthee Suresh、Hamamoto Hiroshi、Sekimizu Kazuhisa
    • Journal Title

      Drug Discoveries & Therapeutics

      Volume: 14 Issue: 4 Pages: 177-180

    • DOI

      10.5582/ddt.2020.03061

    • NAID

      130007897980

    • ISSN
      1881-7831, 1881-784X
    • Year and Date
      2020-08-31
    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Large-scale screening and identification of novel pathogenic staphylococcus aureus genes using a silkworm infection model2020

    • Author(s)
      Paudel Atmika、Hamamoto Hiroshi、Panthee Suresh、Matsumoto Yasuhiko、Sekimizu Kazuhisa
    • Journal Title

      The Journal of Infectious Diseases

      Volume: 221 Issue: 11 Pages: 1795

    • DOI

      10.1093/infdis/jiaa004

    • URL

      https://localhost/en/publications/3c4c72b1-9341-405e-9953-a133e4853b44

    • Related Report
      2020 Research-status Report 2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] COVID-19: the current situation in Nepal2020

    • Author(s)
      Bimala Panthee, Saraswati Dhungana, Nirmal Panthee, Atmika Paudel, Saroj Gyawali, Suresh Panthee
    • Journal Title

      New microbes and new infections

      Volume: 37 Pages: 100737-100737

    • DOI

      10.1016/j.nmni.2020.100737

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Role of Amino Acid Substitution in HepT Toward Menaquinone Isoprenoid Chain Length Definition and Lysocin E Sensitivity in Staphylococcus aureus2020

    • Author(s)
      Panthee Suresh、Paudel Atmika、Hamamoto Hiroshi、Uhlemann Anne-Catrin、Sekimizu Kazuhisa
    • Journal Title

      Frontiers in Microbiology

      Volume: 11 Pages: 2076-2076

    • DOI

      10.3389/fmicb.2020.02076

    • URL

      https://localhost/en/publications/7779f662-ce11-46f5-b0d2-b5de9e15263a

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Discovery of gramicidin A analogues with altered activities by multidimensional screening of a one-bead-one-compound library2020

    • Author(s)
      Takada Yuri、Itoh Hiroaki、Paudel Atmika、Panthee Suresh、Hamamoto Hiroshi、Sekimizu Kazuhisa、Inoue Masayuki
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 4935-4935

    • DOI

      10.1038/s41467-020-18711-2

    • URL

      https://pure.teikyo.jp/en/publications/2e325316-23e8-4ca3-8316-339309de641c

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Clinical and epidemiological features of COVID-19 deaths in Nepal2020

    • Author(s)
      Bimala Panthee, Saraswati Dhungana, Nirmal Panthee, Saroj Gyawali, Atmika Paudel, Suresh Panthee
    • Journal Title

      New Microbes and New Infections

      Volume: 38 Pages: 100797-100797

    • DOI

      10.1016/j.nmni.2020.100797

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Serum proteins potentiate therapeutic efficacy of lysocin E against S. aureus2020

    • Author(s)
      Hiroshi Hamamoto, Suresh Panthee, Atmika Paudel, Kenichi Ishii, Jyunichiro Yasukawa, Su Jie, Hiroaki Itoh, Kotaro Tokumoto, Masayuki Inoue, Kazuhisa Sekimizu
    • Journal Title

      ResearchSquare

      Volume: NA

    • Related Report
      2020 Research-status Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Complete Genome Sequence of Weissella hellenica 0916-4-2 and Its Comparative Genomic Analysis2019

    • Author(s)
      Panthee Suresh、Paudel Atmika、Blom Jochen、Hamamoto Hiroshi、Sekimizu Kazuhisa
    • Journal Title

      Frontiers in Microbiology

      Volume: 10 Pages: 1619-1619

    • DOI

      10.3389/fmicb.2019.01619

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Uncovering Staphylococcus aureus genes with roles in pathogenicity by silkworm infection model2019

    • Author(s)
      Atmika Paudel, Hiroshi Hamamoto, Suresh Panthee, Yasuhiko Matsumoto, Kazuhisa Sekimizu
    • Journal Title

      BioRxiv

      Volume: NA Pages: 714725-714725

    • DOI

      10.1101/714725

    • Related Report
      2019 Research-status Report
    • Open Access / Int'l Joint Research
  • [Journal Article] GPI0363 inhibits the interaction of RNA polymerase with DNA in: Staphylococcus aureus2019

    • Author(s)
      Paudel Atmika、Panthee Suresh、Hamamoto Hiroshi、Sekimizu Kazuhisa
    • Journal Title

      RSC Advances

      Volume: 9 Issue: 65 Pages: 37889

    • DOI

      10.1039/c9ra06844a

    • URL

      https://pure.teikyo.jp/en/publications/47e1bdfb-b628-4166-b7f4-8f52ce1f93f0

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Development of a high-throughput strategy for discovery of potent analogues of antibiotic lysocin E2019

    • Author(s)
      Hiroaki Itoh, Kotaro Tokumoto, Takuya Kaji, Atmika Paudel, Suresh Panthee, Hiroshi Hamamoto, Kazuhisa Sekimizu, Masayuki Inoue
    • Journal Title

      Nature Communications

      Volume: 10 Issue: 1 Pages: 2992-2992

    • DOI

      10.1038/s41467-019-10754-4

    • URL

      https://localhost/en/publications/deb76592-25dc-4d98-9c1c-937b2cafc9e7

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Cryptococcus neoformans の病原性因子の網羅的探索2020

    • Author(s)
      浜本 洋 、石島 早苗、スレス パンシー、アトミカ パウデル、関水 和久
    • Organizer
      第64回日本医真菌学会総会・学術集会
    • Related Report
      2020 Research-status Report
  • [Presentation] Comprehensive gene expression analysis of Cryptococcus neoformans infected in mouse brain2019

    • Author(s)
      Hiroshi Hamamoto, Sanae Ishijima, Suresh Panthee, Paudel Atmika, Kazuhisa Sekimizu
    • Organizer
      ASM Microbe 2019, 2019 Jun 20-24, San Francisco, CA (USA)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Discovering novel roles of genes for virulence of Staphylococcus aureus USA300 using invertebrate model silkworm2019

    • Author(s)
      Suresh Panthee, Hiroshi Hamamoto, Atmika Paudel, Kazuhisa Sekimizu
    • Organizer
      ASM Microbe 2019, 2019 Jun 20-24, San Francisco, CA (USA)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 黄色ブドウ球菌の宿主感染後の時間経過に伴う網羅的遺伝子発現変化の解析2019

    • Author(s)
      浜本洋、Suresh Panthee、Atmika Paudel、関水和久
    • Organizer
      第64回 日本ブドウ球菌研究会、2019年8月30日-31日、佐世保市(長崎国際大学)
    • Related Report
      2019 Research-status Report
  • [Presentation] Cryptococcus neoformansのマウス感染状態における網羅的遺伝子発現解析2019

    • Author(s)
      浜本洋、Suresh Panthee、Atmika Paudel、石島早苗、関水和久
    • Organizer
      第63回 日本医真菌学会総会、2019年10月11日、千葉市(オークラ千葉ホテル
    • Related Report
      2019 Research-status Report

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Published: 2019-04-18   Modified: 2023-03-23  

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