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Generation of HIV-1 resistant T cells from induced pluripotent stem cell using CRISPR/Cas9 system

Research Project

Project/Area Number 19K17925
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 54030:Infectious disease medicine-related
Research InstitutionOsaka University (2021-2022)
Kobe University (2019)

Principal Investigator

オフィンニ ユディル  大阪大学, 免疫学フロンティア研究センター, 特任研究員(常勤) (30837901)

Project Period (FY) 2021-03-01 – 2023-03-31
Project Status Discontinued (Fiscal Year 2022)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2020: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2019: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
KeywordsHIV-1 / iPSC / CRISPR/Cas9 / T cell / Feeder-free / Lentivirus
Outline of Research at the Start

HIV-1 infection is incurable. To cure HIV-1 infection, direct disruption of viral gene is necessary. We previously have developed anti-HIV gene editing using CRISPR/Cas9. To proceed into clinical application, usage of stem cells is the most promising. We plan to use induced pluripotent stem cells (iPSC) to generate large supply of T cells. Thus, our study plan is to efficiently develop iPSC containing anti-HIV-1 CRISPR/Cas9, and differentiate iPSC to generate HIV-1 resistant T cells. Successful generation may lead to a clinically applicable, complete cure for HIV-1.

Outline of Annual Research Achievements

Step 1 of the study has been published in Viruses in 2020 and selected as a cover story of the journal's #11 issue. In Step 2, I have successfully transduced Cas9-gRNA into human mobilized hematopoietic stem cells (HSC) using a lentivector with Cocal virus pseudotyped-envelope. But, Step 3 did not go well as I moved to the US (HIV lab in Harvard), Osaka (Immunology), and now Kobe (Clinical Virology). The labs were not an iPSC lab. iPSC differentiation needed strict protocol and culture environment, and I did not succeed in differentiating the transduced iPSC. I am still hoping to establish a position in an iPSC lab to continue the project.
I prematurely ended the KAKENHI project as I was adopted as a Program-Specific Assistant Professor in Kobe and cannot have any extra research effort.

Report

(3 results)
  • 2022 Annual Research Report
  • 2021 Research-status Report
  • 2019 Annual Research Report
  • Research Products

    (16 results)

All 2023 2022 2021 2020 2019 Other

All Journal Article (10 results) (of which Int'l Joint Research: 10 results,  Peer Reviewed: 10 results,  Open Access: 9 results) Presentation (4 results) (of which Int'l Joint Research: 3 results,  Invited: 3 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Monkeypox: A Comprehensive Review2022

    • Author(s)
      Harapan Harapan、Ophinni Youdiil、Megawati Dewi、Frediansyah Andri、Mamada Sukamto S.、Salampe Mirnawati、Bin Emran Talha、Winardi Wira、Fathima Raisha、Sirinam Salin、Sittikul Pichamon、Stoian Ana M.、Nainu Firzan、Sallam Malik
    • Journal Title

      Viruses

      Volume: 14 Issue: 10 Pages: 2155-2155

    • DOI

      10.3390/v14102155

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Molnupiravir: A lethal mutagenic drug against rapidly mutating severe acute respiratory syndrome coronavirus 2?A narrative review2022

    • Author(s)
      Masyeni Sri、Iqhrammullah Muhammad、Frediansyah Andri、Nainu Firzan、Tallei Trina、Emran Talha Bin、Ophinni Youdiil、Dhama Kuldeep、Harapan Harapan
    • Journal Title

      Journal of Medical Virology

      Volume: - Issue: 7 Pages: 3006-3016

    • DOI

      10.1002/jmv.27730

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Perceived risk of infection and death from COVID-19 among community members of low- and middle-income countries: A cross-sectional study2022

    • Author(s)
      Gachabayov Mahir、Sharun Khan、Felsenreich Daniel M.、Nainu Firzan、Anwar Samsul、Yufika Amanda、Ophinni Youdiil、Yamada Chika、Fahriani Marhami
    • Journal Title

      F1000Research

      Volume: 11 Pages: 345-345

    • DOI

      10.12688/f1000research.109575.1

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Beliefs on social distancing and face mask practices during the COVID-19 pandemic in low- and middle-income countries: a cross-sectional study2022

    • Author(s)
      Harapan Harapan、Yufika Amanda、Anwar Samsul、Ophinni Youdiil、Yamada Chika、Sharun Khan
    • Journal Title

      F1000Research

      Volume: 11 Pages: 206-206

    • DOI

      10.12688/f1000research.79534.1

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Multiplexed tat-Targeting CRISPR-Cas9 Protects T Cells from Acute HIV-1 Infection with Inhibition of Viral Escape2021

    • Author(s)
      Ophinni Youdiil、Miki Sayaka、Hayashi Yoshitake、Kameoka Masanori
    • Journal Title

      Viruses

      Volume: 12 Issue: 11 Pages: 1223-1223

    • DOI

      10.3390/v12111223

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Global prevalence of prolonged gastrointestinal symptoms in COVID-19 survivors and potential?pathogenesis:?A systematic review and meta-analysis2021

    • Author(s)
      Yusuf Fauzi、Fahriani Marhami、Mamada Sukamto S.、Frediansyah Andri、Abubakar Azzaki、Maghfirah Desi、Fajar Jonny Karunia、Maliga Helnida Anggun、Ilmawan Muhammad、Emran Talha Bin、Ophinni Youdiil、Innayah Meutia Rizki、Masyeni Sri、Ghouth Abdulla Salem Bin、Yusuf Hanifah、Dhama Kuldeep、Nainu Firzan、Harapan Harapan
    • Journal Title

      F1000Research

      Volume: 10 Pages: 301-301

    • DOI

      10.12688/f1000research.52216.1

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Anosmia and dysgeusia in SARS-CoV-2 infection: incidence and effects on COVID-19 severity and mortality, and the possible pathobiology mechanisms - a systematic review and meta-analysis2021

    • Author(s)
      Mutiawati Endang、Fahriani Marhami、Mamada Sukamto S.、Fajar Jonny Karunia、Frediansyah Andri、Maliga Helnida Anggun、Ilmawan Muhammad、Emran Talha Bin、Ophinni Youdiil、Ichsan Ichsan、Musadir Nasrul、Rabaan Ali A.、Dhama Kuldeep、Syahrul Syahrul、Nainu Firzan、Harapan Harapan
    • Journal Title

      F1000Research

      Volume: 10 Pages: 40-40

    • DOI

      10.12688/f1000research.28393.1

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Designing an epitope vaccine against Dermatophagoides pteronyssinus: An in silico study2021

    • Author(s)
      Adji Aryani、Niode Nurdjannah J.、Memah Ventje V.、Posangi Jimmy、Wahongan Greta J.P.、Ophinni Youdiil、Idroes Rinaldi、Mahmud Shafi、Emran Talha Bin、Nainu Firzan、Tallei Trina E.、Harapan Harapan
    • Journal Title

      Acta Tropica

      Volume: 222 Pages: 106028-106028

    • DOI

      10.1016/j.actatropica.2021.106028

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Suicidal ideation, psychopathology and associated factors among HIV-infected adults in Indonesia2020

    • Author(s)
      Ophinni Youdiil, Adrian, Siste Kristiana, Wiwie Martina, Anindyajati Gina, Hanafi Enjeline, Damayanti Reza, Hayashi Yoshitake
    • Journal Title

      BMC Psychiatry

      Volume: 20 Issue: 1 Pages: 1-10

    • DOI

      10.1186/s12888-020-02666-1

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] piRNA-Guided CRISPR-like Immunity in Eukaryotes2019

    • Author(s)
      Ophinni Youdiil, Palatini Umberto, Hayashi Yoshitake, Parrish Nicholas F
    • Journal Title

      Trends in Immunology

      Volume: 40 Issue: 11 Pages: 998-1010

    • DOI

      10.1016/j.it.2019.09.003

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] CRISPR-Cas9 to cure viral infection2022

    • Author(s)
      Youdiil Ophinni
    • Organizer
      Malaysian Society of Human Genetics and Indonesian Society of Human Genetics Joint Webinar
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] CRISPR-Cas9 as a curative drug for HIV-1 infection2021

    • Author(s)
      Youdiil Ophinni
    • Organizer
      The 4th International Conference On Bioinformatics, Biotechnology, And Biomedical Engineering
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Cutting the virus: gene editing to cure chronic viral infection2021

    • Author(s)
      Youdiil Ophinni
    • Organizer
      Lecture Course for Doctoral Students, Faculty of Medicine Universitas Indonesia
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] CRISPR/Cas9 system targeting HIV-1 regulatory genes inactivates latent proviral DNA and prevents new infection in T cell culture with inhibition of viral escape2019

    • Author(s)
      Ophinni Youdiil, Inoue Mari, Kotaki Tomohiro, Kameoka Masanori, Hayashi Yoshitake.
    • Organizer
      10th International AIDS Society (IAS) Conference on HIV Science
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Book] Apoptosis and phagocytosis as antiviral mechanisms2023

    • Author(s)
      Firzan Nainu, Youdiil Ophinni, Akiko Shiratsuchi, Yoshinobu Nakanishi
    • Total Pages
      21
    • Publisher
      Springer Nature
    • ISBN
      9783031400865
    • Related Report
      2022 Annual Research Report
  • [Remarks] piRNA抗ウイルス免疫に関するレビュー

    • URL

      https://www.kobe-u.ac.jp/research_at_kobe/NEWS/news/2019_11_19_01.html

    • Related Report
      2019 Annual Research Report

URL: 

Published: 2019-04-18   Modified: 2024-12-25  

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