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Experimental and theoretical investigation of Bayesian inference across multiple layers in somatosensory cortex

Research Project

Project/Area Number 19K20348
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 61030:Intelligent informatics-related
Research InstitutionOkinawa Institute of Science and Technology Graduate University

Principal Investigator

Li Yuzhe  沖縄科学技術大学院大学, 神経計算ユニット, スタッフサイエンティスト (30815436)

Project Period (FY) 2019-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2020: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2019: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
KeywordsBayesian inference / Decision making / Uncertainty / Cortical layers / Calcium imaging / functional connectivity / dimensionality reduction / metastate / cortical layers / prism lens / calcium imaging / factor analysis / Bayesian PCA / transfer entropy / multiple cortical layers / clustering / somatosensory cortex / active lever / operant conditioning
Outline of Research at the Start

Bayesian brain theory explains a wide range of sensorimotor behaviors. It hypothesizes that actions are guided by experience and sensory evidence. This project aims to investigate the neural mechanisms of Bayesian-like behaviors on the basis of the multi-layer structure of the cortical cortex.

Outline of Final Research Achievements

This project aims to investigate how animals make decisions in uncertain environments and how neural activity across different cortical layers contributes to the decision-making process. To achieve this, we designed a lever push/pull task for mice and implanted a prism lens in the cortex to simultaneously capture calcium imaging data from multiple layers. To analyze the noisy calcium imaging data, we developed a dual ARD (Automatic Relevance Determination) method for dimensionality reduction, which also was used for decoding and encoding in subsequent analyses. Furthermore, we have explored the temporal and spatial connectivity patterns among neurons from different layers. We are currently utilizing Bayesian models to analyze the neural activities. By integrating the various approaches we have developed throughout this project and continuing our ongoing efforts, we anticipate uncovering valuable insights into decision-making process that takes place among different cortical layers.

Academic Significance and Societal Importance of the Research Achievements

The exploration of neural activity patterns across cortical layers provides insights into how different layers of the brain communicate and organize information. Understanding how decision-making occurs at the neural level will deepen our understanding of human behavior, cognition, and perception.

Report

(5 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • Research Products

    (8 results)

All 2023 2022 2021 2020

All Presentation (8 results) (of which Int'l Joint Research: 5 results,  Invited: 1 results)

  • [Presentation] Neural connectivity among different layers changes at different brain states2023

    • Author(s)
      Yuzhe Li, Kenji Doya
    • Organizer
      Workshop on Mechanism of Brain and Mind
    • Related Report
      2022 Annual Research Report
  • [Presentation] Dual Bayesian PCA for Factor Analysis on Calcium imaging data2022

    • Author(s)
      Yuzhe Li, Kenji Doya
    • Organizer
      The 45th Annual Meeting of the Japan Neuroscience Society (Neuron2022)
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Investigation of information flow and temporal-spatial organization of neurons across cortical layers from multi-depth two-photon imaging data.2021

    • Author(s)
      Yuzhe Li
    • Organizer
      The 44th Annual Meeting of the Japan Neuroscience Society / The 1st CJK International Meeting.
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research
  • [Presentation] Investigation of temporal and spatial origination of neural network in sensory cortex2020

    • Author(s)
      Yuzhe Li
    • Organizer
      The 30th Annual Conference of Japanese Neural Network Society
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] Neuron hubs distributed differently in deep layers and superficial layers in different brain states. The 1st Asia-Pacific Computational and Cognitive Neuroscience Conference2020

    • Author(s)
      Yuzhe Li
    • Organizer
      The 1st Asia-Pacific Computational and Cognitive Neuroscience Conference
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] Extracting information flow across cortical layers from multi-depth two-photon imaging data2020

    • Author(s)
      Yuzhe Li
    • Organizer
      第63回自動制御連合講演会-講演論文集
    • Related Report
      2020 Research-status Report
  • [Presentation] Investigation of information flow and temporal-spatial organization of neurons across cortical layers from multi-depth two-photon imaging data2020

    • Author(s)
      Yuzhe Li
    • Organizer
      データ駆動生物学ワークショップ
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] Investigation of temporal and spatial origination of neural network in sensory cortex2020

    • Author(s)
      Yuzhe Li
    • Organizer
      第43回日本神経科学大会
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research

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Published: 2019-04-18   Modified: 2024-01-30  

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