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Micro-scale, in-vivo structural and functional tomography of rodent habenula using polarization-sensitive optical coherence tomography

Research Project

Project/Area Number 19K20674
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 90110:Biomedical engineering-related
Research InstitutionHiroshima University

Principal Investigator

KASARAGOD DEEPA KAMATH  広島大学, 医系科学研究科(医), 助教 (40773908)

Project Period (FY) 2019-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2020: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2019: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsOptical Imaging / optical imaging / 光脳科学
Outline of Research at the Start

The study focusses on the development of polarization sensitive optical coherence tomography system at longer wavelength for deep brain imaging to understand the structural and functional aspects of habenular region with main focus on its role in the psychiatric disorders including depression.

Outline of Final Research Achievements

Habenula is a tiny anatomical structure that links the forebrain to the midbrain which regulates pathways associated with a range of behaviors including reproductive behaviors, central pain processing, nutrition, sleep-wake cycles, stress responses, and learning with lateral and medial habenula showing differences in connectivity and function.
The proposed research aimed at developing an imaging tool for volumetric assessment of small brain structures like habenula with high resolution.

Academic Significance and Societal Importance of the Research Achievements

The proposed research developed a cost-effective 3-dimensional (3D) imaging tool that allows for high-throughput and high resolution imaging of brain structures. Serial imaging allows for easy 3D reconstruction for macroscopic quantitative analysis based on the high resolution brain imaging data.

Report

(3 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • Research Products

    (9 results)

All 2021 2020 2019

All Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Open Access: 1 results,  Peer Reviewed: 1 results) Presentation (7 results) (of which Int'l Joint Research: 3 results)

  • [Journal Article] Semantic Web Oriented Approaches for Smaller Communities in Publishing Findable Datasets2021

    • Author(s)
      N Thalhath, M Nagamori, T Sakaguchi, D Kasaragod, S Sugimoto
    • Journal Title

      Metadata and Semantic Research

      Volume: - Pages: 234-242

    • DOI

      10.1007/978-3-030-71903-6_23

    • ISBN
      9783030719029, 9783030719036
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Deep ultraviolet light based wide-field fluorescence microscope for brain imaging2020

    • Author(s)
      D Kasaragod, M Zhu, H Terai, K Kawakami, H Aizawa
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2020.10.27.342345

    • Related Report
      2020 Annual Research Report
    • Open Access / Int'l Joint Research
  • [Presentation] A simplified optical scheme for high resolution serial block-face fluorescence microscopy for 3-dimensional morphometry of rodent brains2021

    • Author(s)
      D Kasaragod, M Zhu, H Aizawa
    • Organizer
      Focus on Microscopy - 2021 (Online)
    • Related Report
      2020 Annual Research Report
  • [Presentation] Deep ultraviolet based serial block-face imaging for 3-dimensional morphological assessment of the rodent brains2021

    • Author(s)
      D Kasaragod, M Zhu, H Aizawa
    • Organizer
      Optics and Photonics International Congress -The 7th Biomedical Imaging and Sensing Conference (Online)
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Wide-field serial block-face fluorescence microscope using deep ultraviolet light for whole-brain imaging2020

    • Author(s)
      D Kasaragod, M Zhu, H Takemoto, H Aizawa
    • Organizer
      Neuro2020- Japan Neuroscience Society Annual Meeting (Online)
    • Related Report
      2020 Annual Research Report
  • [Presentation] Semantic Web oriented approaches for smaller communities in publishing findable datasets2020

    • Author(s)
      N Thalhath, M Nagamori, T Sakaguchi, D Kasaragod, S Sugimoto
    • Organizer
      Metadata and Semantic Research - 2020 (Online)
    • Related Report
      2020 Annual Research Report
  • [Presentation] Whole-brain imaging using wide-field fluorescence microscope with deep ultraviolet surface excitation2020

    • Author(s)
      Deepa Kamath Kasaragod
    • Organizer
      Neural Imaging and Sensing 2020, SPIE BIOS Photonics West- 2020, San Francisco
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Wide-field deep ultraviolet surface excitation microscope for 3-dimensional brain imaging2020

    • Author(s)
      Deepa Kamath Kasaragod
    • Organizer
      Focus on Microscopy-2020-Osaka (accepted for oral presentation, cancelled due to COVID-19)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Wide-field surface emission deep ultraviolet fluorescence microscope for whole brain imaging2019

    • Author(s)
      Deepa Kamath Kasaragod
    • Organizer
      Neuro2019-Niigata Japan Neuroscience Society Annual Meeting
    • Related Report
      2019 Research-status Report

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Published: 2019-04-18   Modified: 2022-01-27  

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