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Establishing an open science platform of marine ecosystem by soundscape information retrieval

Research Project

Project/Area Number 19K21554
Project/Area Number (Other) 18H06491 (2018)
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeMulti-year Fund (2019)
Single-year Grants (2018)
Review Section 1002:Human informatics, applied informatics and related fields
Research InstitutionJapan Agency for Marine-Earth Science and Technology

Principal Investigator

Lin Tzu-Hao  国立研究開発法人海洋研究開発機構, 地球環境部門(海洋生物環境影響研究センター), ポストドクトラル研究員 (00824377)

Project Period (FY) 2018-08-24 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
KeywordsSoundscape / Information retrieval / Ecoacoustics / Machine learning / Deep sea / Underwater sound / Marine soundscape / Ecosystem dynamics / Bioacoustic diversity
Outline of Research at the Start

Understanding the ecological pattern and variability is essential for the management of marine conservation. Soundscape, which contains biological, environmental, and human-made sounds, has been considered as a platform for the remote sensing of marine ecosystems. The purpose of this research is to integrate ecological knowledge in machine learning techniques for assisting the identification of underwater sounds. Outcomes of this project will facilitate the establishment of an open science platform of the marine soundscape, which allows international users to explore ecosystem dynamics.

Outline of Final Research Achievements

Soundscapes, which are composited by sounds of biological, environmental, and anthropogenic sources, have been considered as a remote sensing platform to monitor marine ecosystems. This project aims to facilitate the assessment of the spatial-temporal dynamics of marine ecosystems via soundscape information retrieval (SIR). During the project period, we developed techniques for audio visualization, source separation, and event identification. Long-duration recordings were collected from algal reefs, continental shelves, coral reefs, estuaries, and deep-sea environments. On the basis of SIR, single-channel audio can be transformed into multiple ecological dimensions, including the changes of acoustic environment, biodiversity, and anthropogenic interference. This project also enables the "Ocean Biodiversity Listening Project" and will further contribute a large amount of acoustic data for researchers who interest in using soundscape information for ecosystem monitoring.

Academic Significance and Societal Importance of the Research Achievements

Listening to natural sounds allows us to remotely acquire data of biodiversity and investigate the changes in response to human development. The outcome can help managers and stakeholders to use soundscapes in the ecosystem assessment and improve the decision making of conservation management.

Report

(3 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • Research Products

    (23 results)

All 2019 2018 Other

All Int'l Joint Research (3 results) Journal Article (4 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (10 results) (of which Int'l Joint Research: 9 results,  Invited: 4 results) Remarks (6 results)

  • [Int'l Joint Research] Tunghai University/National Museum of Natural Science/Academia Sinica(台湾)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Cetacea Research Institute/The University of Hong Kong(香港)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] University of the Philippines Cebu(フィリピン)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Source separation in ecoacoustics: A roadmap towards versatile soundscape information retrieval2019

    • Author(s)
      Tzu‐Hao Lin, Yu Tsao
    • Journal Title

      Remote Sensing in Ecology and Conservation

      Volume: - Issue: 3 Pages: 1-12

    • DOI

      10.1002/rse2.141

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Using Soundscapes to Assess Deep-Sea Benthic Ecosystems2019

    • Author(s)
      Lin Tzu-Hao、Chen Chong、Watanabe Hiromi Kayama、Kawagucci Shinsuke、Yamamoto Hiroyuki、Akamatsu Tomonari
    • Journal Title

      Trends in Ecology & Evolution

      Volume: 34 Issue: 12 Pages: 1066-1069

    • DOI

      10.1016/j.tree.2019.09.006

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Characterizing the ecosystem-specific marine soundscape by a hypothesis-driven source separation2019

    • Author(s)
      Tzu-Hao Lin, Tomonari Akamatsu, Saki Harii, Frederic Siniger, Kuo-Chang Wen
    • Journal Title

      2019 Annual Meeting of the Marine Acoustical Society of Japan

      Volume: - Pages: 1-2

    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Journal Article] Evaluating changes in the marine soundscape of an offshore wind farm via the machine learning-based source separation2019

    • Author(s)
      Tzu-Hao Lin, Hsin-Te Yang, Jie- Mao Huang, Chiou-Ju Yao, Yung-Shun Lien, Pei-Jung Wang, Fang-Yu Hu
    • Journal Title

      2019 IEEE Underwater Technology (UT)

      Volume: - Pages: 1-6

    • DOI

      10.1109/ut.2019.8734295

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Learning discriminative bioacoustic features by deep-listening wildlife sounds2019

    • Author(s)
      Tzu-Hao Lin, Yu Tsao, Mao-Ning Tuanmu
    • Organizer
      The 6th Annual Meeting of the Society for Bioacoustics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Characterizing diversity of fish sounds using audio information retrieval2019

    • Author(s)
      Tzu-Hao Lin, Tomonari Akamatsu, and Colin Kuo-Chang Wen
    • Organizer
      The Thirteen Annual Meeting of Asian Fisheries Acoustics Society
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Ocean biodiversity listening project: an acoustic approach of marine ecosystem assessment2019

    • Author(s)
      Tzu-Hao Lin, Florence Evacitas, Jhoanna Jane Layos, Claire Ayuban, Pia Cinco, Hazel Arceo
    • Organizer
      The Fourth Asian Marine Biology Symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Characterizing the ecosystem-specific marine soundscape by a hypothesis-driven source separation2019

    • Author(s)
      Tzu-Hao Lin, Tomonari Akamatsu, Saki Harii, Frederic Siniger, Kuo-Chang Wen
    • Organizer
      2019 Annual Meeting of the Marine Acoustical Society of Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] Evaluating changes in the marine soundscape of an offshore wind farm via the machine learning-based source separation2019

    • Author(s)
      Tzu-Hao Lin, Hsin-Te Yang, Jie- Mao Huang, Chiou-Ju Yao, Yung-Shun Lien, Pei-Jung Wang, Fang-Yu Hu
    • Organizer
      2019 IEEE Underwater Technology (UT)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Exploring ecosystem dynamics by hypotheses-driven soundscape information retrieval2019

    • Author(s)
      Tzu-Hao Lin, Yu Tsao
    • Organizer
      International Symposium on Grids and Clouds, 2019 & Soundscape Conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Exploring ecosystem dynamics by hypotheses-driven soundscape information retrieval2019

    • Author(s)
      Tzu-Hao Lin, Yu Tsao
    • Organizer
      International Symposium on Grids and Clouds 2019 & Soundscape Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Information retrieval from marine soundscape by using machine learning-based source separation2018

    • Author(s)
      Tzu-Hao Lin, Tomonari Akamatsu, Yu Tsao, Katsunori Fujikura
    • Organizer
      10th International Conference on Ecological Informatics
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Applying machine-learning based source separation techniques in the analysis of marine soundscapes2018

    • Author(s)
      Tzu-Hao Lin, Tomonari Akamatsu, Yu Tsao, Katsunori Fujikura
    • Organizer
      176th Meeting of Acoustical Society of America
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Information retrieval from a soundscape by using blind source separation and clustering2018

    • Author(s)
      Tzu-Hao Lin, Yu Tsao, Tomonari Akamatsu, Mao-Ning Tuanmu, Katsunori Fujikura
    • Organizer
      176th Meeting of Acoustical Society of America
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Remarks] Ocean Biodiversity Listening Project

    • URL

      https://sites.google.com/view/marine-ecoacoustics/projects/biodiversity-listening-project

    • Related Report
      2019 Annual Research Report
  • [Remarks] 海底資源開発における環境影響評価に音の活用を提案

    • URL

      https://www.jamstec.go.jp/j/about/press_release/20191108/

    • Related Report
      2019 Annual Research Report
  • [Remarks] Soundscape Information Retrieval

    • URL

      https://sites.google.com/view/marine-ecoacoustics/projects/sir

    • Related Report
      2019 Annual Research Report
  • [Remarks] Soundscape Viewer (Python)

    • URL

      https://github.com/schonkopf/soundscape_IR

    • Related Report
      2019 Annual Research Report
  • [Remarks] Run Soundscape Viewer on Colab

    • URL

      https://colab.research.google.com/drive/1N4rFC6eXbvRbb9LVcTkELWzkfusKoUOv

    • Related Report
      2019 Annual Research Report
  • [Remarks] Soundscape Viewer

    • URL

      https://codeocean.com/2018/11/16/demonstration-of-soundscape-separation-by-using-the-soundscape-viewer

    • Related Report
      2018 Annual Research Report

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Published: 2018-08-27   Modified: 2024-03-26  

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