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Optimization of molecular robot swarms for the emergence of collective behaviors

Research Project

Project/Area Number 19KK0261
Research Category

Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 62:Applied informatics and related fields
Research InstitutionOchanomizu University

Principal Investigator

AUBERT-KATO Nathanael  お茶の水女子大学, 基幹研究院, 講師 (10749659)

Co-Investigator(Kenkyū-buntansha) 川又 生吹  京都大学, 理学研究科, 准教授 (30733977)
佐藤 佑介  九州工業大学, 大学院情報工学研究院, 准教授 (60830560)
Project Period (FY) 2019-10-07 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2023: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2022: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2021: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2020: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2019: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
KeywordsMolecular robotics / Swarm / Collective behaviors / Reaction-Diffusion / Microfluidics / Quality-Diversity / Evolutionary algorithms / Swarm robotics / Microtubules / PEN DNA toolbox / Molecular Robotics / Collective Behaviors / Evolutionary Algorithm
Outline of Research at the Start

This project aims to find optimal conditions for the emergence of robust cooperative behaviors in a swarm of molecular robots. During a past collaboration with the International collaborators, we implemented a swarm of one million molecular robots capable of simple aggregation. We will build onto that platform to test and implement new molecular robotic systems, using simulation and evolutionary optimization on the theoretical side, and in-vitro implementation on the experimental side. Furthermore, implementation in a standard fleet of small robots to bridge the reality gap.

Outline of Final Research Achievements

In this project, we focused on exploring the optimal conditions for swarming behavior in a system of molecular robots. The ability for individuals in a group to collaborate and reach a consensus is an important factor for the emergence of natural phenomenon such as aggregation or quorum sensing. In the molecular robotic systems considered in this project, the behavior of the robot is decided through communication with the group and environment rather than from external influence. Moreover, we focused on the factors necessary for robust group behaviors, both to individual failure and communication noise. We validated our results in simulation, on a swarm of small (regular) robots, and on molecular robots.

Academic Significance and Societal Importance of the Research Achievements

本研究が該当する分子ロボティクス分野は、医療や生物学、スマートマテリアルへの応用可能性を秘めており、学術的意義は大きい。特に分子ロボットの集団運動能力を向上させることは、耐故障性や冗長性の観点で性能向上に大きく寄与するため、さまざま波及効果があると期待される。

Report

(6 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • Research Products

    (91 results)

All 2024 2023 2022 2021 2020 2019 Other

All Int'l Joint Research (5 results) Journal Article (34 results) (of which Int'l Joint Research: 30 results,  Peer Reviewed: 30 results,  Open Access: 27 results) Presentation (48 results) (of which Int'l Joint Research: 9 results,  Invited: 16 results) Book (1 results) Remarks (1 results) Funded Workshop (2 results)

  • [Int'l Joint Research] ISIR (Sorbonne University)/LJP (Sorbonne University)(フランス)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] Sorbonne University, ISIR/Sorbonne University, LJP(フランス)

    • Related Report
      2022 Research-status Report
  • [Int'l Joint Research] ISIR, Sorbonne Universite/JLP, Sorbonne Universite(フランス)

    • Related Report
      2021 Research-status Report
  • [Int'l Joint Research] ISIR, Sorbonne Universite/JLP, Sorbonne Universite(フランス)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] ISIR, Sorbonne Universite/JLP, Sorbonne Universite(フランス)

    • Related Report
      2019 Research-status Report
  • [Journal Article] Non-catalytic role of phosphoinositide 3-kinase in mesenchymal cell migration through non-canonical induction of p85β/AP2-mediated endocytosis2024

    • Author(s)
      Matsubayashi Hideaki T.、Mountain Jack、Takahashi Nozomi、Deb Roy Abhijit、Yao Tony、Peterson Amy F.、Saez Gonzalez Cristian、Kawamata Ibuki、Inoue Takanari
    • Journal Title

      Nature Communications

      Volume: 15 Issue: 1 Pages: 1-16

    • DOI

      10.1038/s41467-024-46855-y

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Chemo-mechanical forces modulate the topology dynamics of mesoscale DNA assemblies2023

    • Author(s)
      Karna Deepak、Mano Eriko、Ji Jiahao、Kawamata Ibuki、Suzuki Yuki、Mao Hanbin
    • Journal Title

      Nature Communications

      Volume: 14 Issue: 1 Pages: 6459-6459

    • DOI

      10.1038/s41467-023-41604-z

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Collective Cargo Transport and Sorting with Molecular Swarms2023

    • Author(s)
      Aubert-Kato Nathanael、Nitschke Geoff、Kawamata Ibuki、Kakugo Akira
    • Journal Title

      ALIFE 2023

      Volume: -

    • DOI

      10.1162/isal_a_00593

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Multi-Reconfigurable DNA Origami Nanolattice Driven by the Combination of Orthogonal Signals2023

    • Author(s)
      Kotaro Watanabe, Ibuki Kawamata, Satoshi Murata, Yuki Suzuki
    • Journal Title

      JACS Au

      Volume: To appear Issue: 5 Pages: 1-8

    • DOI

      10.1021/jacsau.3c00091

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Sequence-dependent fusion dynamics and physical properties of DNA droplets2023

    • Author(s)
      Sato Yusuke、Takinoue Masahiro
    • Journal Title

      Nanoscale Advances

      Volume: 5 Issue: 7 Pages: 1919-1925

    • DOI

      10.1039/d3na00073g

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Neural coding of temperature with a DNA-based spiking chemical neuron2022

    • Author(s)
      Lobato-Dauzier N.、Baccouche A.、Gines G.、L?vi T.、Rondelez Y.、Fujii T.、Kim S. H.、Aubert-Kato N.、Genot A.J.
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2022.07.06.498929

    • Related Report
      2022 Research-status Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Toggling Between Two Limit Cycles in a Molecular Ecosystem2022

    • Author(s)
      Fauste-Gay Adrien、Lobato-Dauzier Nicolas、Baccouche Alexandre、Rondelez Yannick、Kim Soo Hyeon、Fujii Teruo、Aubert-Kato Nathanael、Genot Anthony J.
    • Journal Title

      New Generation Computing

      Volume: 40 Issue: 2 Pages: 703-721

    • DOI

      10.1007/s00354-022-00178-y

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Self-replication and Mutation of Polymeric Molecules Simulated by Simplified Chemistry2022

    • Author(s)
      Mori Taisei、Kawamata Ibuki、Murata Satoshi
    • Journal Title

      14th International Workshop on Parallel and Distributed Algorithms and Applications (PDAA)

      Volume: - Pages: 192-198

    • DOI

      10.1109/candarw57323.2022.00083

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Algorithmic Design of 3D Wireframe RNA Polyhedra2022

    • Author(s)
      Elonen Antti、Natarajan Ashwin Karthick、Kawamata Ibuki、Oesinghaus Lukas、Mohammed Abdulmelik、Seitsonen Jani、Suzuki Yuki、Simmel Friedrich C.、Kuzyk Anton、Orponen Pekka
    • Journal Title

      ACS Nano

      Volume: 16 Issue: 10 Pages: 16608-16616

    • DOI

      10.1021/acsnano.2c06035

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Lipid bilayer-assisted dynamic self-assembly of hexagonal DNA origami blocks into monolayer crystalline structures with designed geometries2022

    • Author(s)
      Suzuki Yuki、Kawamata Ibuki、Watanabe Kotaro、Mano Eriko
    • Journal Title

      iScience

      Volume: 25 Issue: 5 Pages: 104292-104292

    • DOI

      10.1016/j.isci.2022.104292

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Autonomous and Programmable Strand Generator Implemented as DNA and Enzymatic Chemical Reaction Cascade2022

    • Author(s)
      Kawamata Ibuki、Nomura Shin-ichiro M.、Murata Satoshi
    • Journal Title

      New Generation Computing

      Volume: - Issue: 2 Pages: 723-736

    • DOI

      10.1007/s00354-022-00156-4

    • Related Report
      2022 Research-status Report 2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] DNA Droplets: Intelligent, Dynamic Fluid2022

    • Author(s)
      Udono Hirotake、Gong Jing、Sato Yusuke、Takinoue Masahiro
    • Journal Title

      Advanced Biology

      Volume: 7 Issue: 3 Pages: 2200180-2200180

    • DOI

      10.1002/adbi.202200180

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Surfactant‐Assisted Purification of Hydrophobic DNA Nanostructures2022

    • Author(s)
      Iwabuchi Shoji、Nomura Shin‐ichiro M.、Sato Yusuke
    • Journal Title

      ChemBioChem

      Volume: 24 Issue: 4

    • DOI

      10.1002/cbic.202200568

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Water‐in‐Water Droplets Selectively Uptake Self‐Assembled DNA Nano/Microstructures: a Versatile Method for Purification in DNA Nanotechnology2022

    • Author(s)
      Masukawa Marcos K.、Sato Yusuke、Yu Fujio、Tsumoto Kanta、Yoshikawa Kenichi、Takinoue Masahiro
    • Journal Title

      ChemBioChem

      Volume: 23 Issue: 17

    • DOI

      10.1002/cbic.202200240

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Computational DNA Droplets Recognizing miRNA Sequence Inputs Based on Liquid?Liquid Phase Separation2022

    • Author(s)
      Gong Jing、Tsumura Nozomi、Sato Yusuke、Takinoue Masahiro
    • Journal Title

      Advanced Functional Materials

      Volume: 32 Issue: 37 Pages: 2202322-2202322

    • DOI

      10.1002/adfm.202202322

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Pattern Formation and Information Processing Based on Phase-separated DNA Droplets2022

    • Author(s)
      SATO Yusuke、TAKINOUE Masahiro
    • Journal Title

      Seibutsu Butsuri

      Volume: 62 Issue: 6 Pages: 345-347

    • DOI

      10.2142/biophys.62.345

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2022 Research-status Report
  • [Journal Article] 自律型分子コンピューティングの現状と未来2022

    • Author(s)
      佐藤佑介,公婧,瀧ノ上正浩
    • Journal Title

      高分子

      Volume: 10 Pages: 522-524

    • Related Report
      2022 Research-status Report
  • [Journal Article] Construction of Artificial Cell-type Molecular Robots2022

    • Author(s)
      IWABUCHI Shoji、FUKAMI Noriki、SATO Yusuke、NOMURA Shin-ichiro M.
    • Journal Title

      Seibutsu Butsuri

      Volume: 62 Issue: 3 Pages: 178-180

    • DOI

      10.2142/biophys.62.178

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Controlling the Synchronization of Molecular Oscillators through Indirect Coupling2022

    • Author(s)
      Inagaki Shiho、Aubert-Kato Nathanael
    • Journal Title

      Micromachines

      Volume: 13 Issue: 2 Pages: 245-245

    • DOI

      10.3390/mi13020245

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Therapeutic Applications of Programmable DNA Nanostructures2022

    • Author(s)
      Aye Seaim、Sato Yusuke
    • Journal Title

      Micromachines

      Volume: 13 Issue: 2 Pages: 315-315

    • DOI

      10.3390/mi13020315

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Web Server with a Simple Interface for Coarse-grained Molecular Dynamics of DNA Nanostructures2021

    • Author(s)
      Yudai Yamashita, Kotaro Watanabe, Satoshi Murata, Ibuki Kawamata
    • Journal Title

      Chem-Bio Informatics Journal

      Volume: 21 Issue: 0 Pages: 28-38

    • DOI

      10.1273/cbij.21.28

    • NAID

      130008031759

    • ISSN
      1347-0442, 1347-6297
    • Year and Date
      2021-04-30
    • Related Report
      2021 Research-status Report 2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Emergence of structures from parasitic species in a spatially distributed molecular system2021

    • Author(s)
      Aubert-Kato Nathanael、Gines Guillaume、Fujii Teruo、Rondelez Yannick
    • Journal Title

      ALIFE 2021: The 2021 Conference on Artificial Life

      Volume: 2021

    • DOI

      10.1162/isal_a_00454

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Cascaded pattern formation in hydrogel medium using the polymerisation approach2021

    • Author(s)
      Keita Abe, Satoshi Murata, Ibuki Kawamata
    • Journal Title

      Soft Matter

      Volume: 25 Issue: 25 Pages: 6160-6167

    • DOI

      10.1039/d1sm00296a

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Large, square-shaped, DNA origami nanopore with sealing function on giant vesicle membrane2021

    • Author(s)
      Shoji Iwabuchi, Ibuki Kawamata, Satoshi Murata, Shin-Ichiro M. Nomura
    • Journal Title

      Chemical Communications

      Volume: 57 Issue: 24 Pages: 2990-2993

    • DOI

      10.1039/d0cc07412h

    • Related Report
      2021 Research-status Report 2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] “Capsule-like DNA hydrogels with patterns formed by lateral phase separation of DNA nanostructures”2021

    • Author(s)
      Yusuke Sato, *Masahiro Takinoue
    • Journal Title

      JACS Au

      Volume: Vol.2 Issue: 1 Pages: 159-168

    • DOI

      10.1021/jacsau.1c00450

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Emergence of structures from parasitic species in a spatially distributed molecular system2021

    • Author(s)
      N. Aubert-Kato, G. Gines, T. Fujii, Y. Rondelez
    • Journal Title

      ALIFE 2021: The 2021 Conference on Artificial Life

      Volume: ALIFE2021

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cascaded pattern formation in hydrogel medium using the polymerisation approach2021

    • Author(s)
      K. Abe, S. Murata, I. Kawamata
    • Journal Title

      Soft Matter

      Volume: -

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] DNA nanotechnology provides an avenue for the construction of programmable dynamic molecular systems2021

    • Author(s)
      Sato Yusuke、Suzuki Yuki
    • Journal Title

      Biophysics and Physicobiology

      Volume: 18 Issue: 0 Pages: 116-126

    • DOI

      10.2142/biophysico.bppb-v18.013

    • NAID

      130008043992

    • ISSN
      2189-4779
    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Pattern Regulation of DNA Hydrogels Formed by Lateral Phase Separation of DNA Nanostructures on Water-in-Oil Droplet Interfaces2021

    • Author(s)
      Sato Yusuke、Takinoue Masahiro
    • Journal Title

      ChemRxiv

      Volume: -- Pages: 1-33

    • DOI

      10.26434/chemrxiv.14245532.v1

    • Related Report
      2020 Research-status Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Designing Dynamical Molecular Systems with the PEN Toolbox2020

    • Author(s)
      Aubert-Kato Nathanael、Cazenille Leo
    • Journal Title

      New Generation Computing

      Volume: 38 Issue: 2 Pages: 341-366

    • DOI

      10.1007/s00354-020-00089-w

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] DNA Origami “Quick” Refolding inside of a Micron-Sized Compartment2020

    • Author(s)
      Taiki Watanabe, Yusuke Sato, Hayato Otaka, Ibuki Kawamata, Satoshi Murata, Shin-Ichiro M. Nomura
    • Journal Title

      Molecules

      Volume: 25 Issue: 1 Pages: 8-8

    • DOI

      10.3390/molecules25010008

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Photolithographic shape control of DNA hydrogels by photo-activated self-assembly of DNA nanostructures2020

    • Author(s)
      Kasahara Yu、Sato Yusuke、Masukawa Marcos K.、Okuda Yukiko、Takinoue Masahiro
    • Journal Title

      APL Bioengineering

      Volume: 4 Issue: 1 Pages: 016109-016109

    • DOI

      10.1063/1.5132929

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Sequence-based engineering of dynamic functions of micrometer-sized DNA droplets2020

    • Author(s)
      Sato Yusuke、Sakamoto Tetsuro、Takinoue Masahiro
    • Journal Title

      Science Advances

      Volume: 6 Issue: 23 Pages: 3471-3471

    • DOI

      10.1126/sciadv.aba3471

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Session 1SCA?Utilizing soft compartments/interfaces for the creation of artificial biosystems2020

    • Author(s)
      Sato Yusuke、Morita Masamune、Suzuki Yuki
    • Journal Title

      Biophysical Reviews

      Volume: 12 Issue: 2 Pages: 257-259

    • DOI

      10.1007/s12551-020-00647-y

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] 人工多細胞系での時空間情報処理を目指したDNA振動回路の構築2024

    • Author(s)
      高橋風雲, 野村M.慎一郎, 村田智, 川又生吹, 松林英明, 安部桂太
    • Organizer
      第7回分子ロボティクス年次大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] DNAオリガミの技術紹介2023

    • Author(s)
      川又生吹
    • Organizer
      第61回日本生物物理学会年会 第二回ピッチコンテスト
    • Related Report
      2023 Annual Research Report
  • [Presentation] Realization of Self-assembling Tiles using DNA Nanotechnology2023

    • Author(s)
      Ibuki Kawamata
    • Organizer
      Mathematics of tilings and quasiperiodic systems
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] DNA反応系によるガラス上キネシン-微小管運動の制御2023

    • Author(s)
      川又生吹
    • Organizer
      第12回分子モーター討論会
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] サブミクロンスケールのトラス型DNAナノ構造体の精密設計2023

    • Author(s)
      川又生吹, 山下雄大, 村田智
    • Organizer
      CHEMINAS 47
    • Related Report
      2023 Annual Research Report
  • [Presentation] DNA ナノテクノロジーを軸とした細胞型分子システムのボトムアップ構築2023

    • Author(s)
      佐藤佑介
    • Organizer
      第13回日本細胞性粘菌学会例会
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] DNAナノテクノロジーによる脂質膜の機能化と制御2023

    • Author(s)
      佐藤佑介
    • Organizer
      化学とマイクロ・ナノシステム学会 第47回研究会
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] Assembly and Applications of Liquid-like Condensates Formed from Sequence-Designed DNA Nanostructures2023

    • Author(s)
      Yusuke Sato
    • Organizer
      The 29th International Conference on DNA computing and Molecular Programming
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 相分離DNAハイドロゲルを用いた細胞皮質様構造の構築2023

    • Author(s)
      吉永琢朗,佐藤佑介
    • Organizer
      細胞を作る研究会16.0
    • Related Report
      2023 Annual Research Report
  • [Presentation] DNAナノ構造の液液相分離現象とその活用2023

    • Author(s)
      佐藤佑介
    • Organizer
      第72回高分子討論会
    • Related Report
      2023 Annual Research Report
  • [Presentation] Regulation of spatiotemporal formation of DNA droplet2023

    • Author(s)
      甲斐省吾,佐藤佑介
    • Organizer
      CBI学会2023年大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] Phase separation of microstructures by sequence-designed DNA and peptides2023

    • Author(s)
      大野弘晃,佐藤佑介
    • Organizer
      CBI学会2023年大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] Efficient DNA-based structure automated exploration with machine-learning models2023

    • Author(s)
      竹口葵, オベル加藤ナタナエル
    • Organizer
      CBI学会2023年大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] Toward construction of DNA hydrogel-based cortex-like structures for liposome functionalization2023

    • Author(s)
      吉永琢朗,佐藤佑介
    • Organizer
      第61回生物物理学会年会
    • Related Report
      2023 Annual Research Report
  • [Presentation] DNAハイドロゲルを用いたリポソーム膜における分子分布規定方法の開発2023

    • Author(s)
      吉永琢朗,佐藤佑介
    • Organizer
      化学とマイクロ・ナノシステム学会第48回研究会
    • Related Report
      2023 Annual Research Report
  • [Presentation] DNA液滴の時空間的形成の制御2023

    • Author(s)
      甲斐省吾,佐藤佑介
    • Organizer
      化学とマイクロ・ナノシステム学会第48回研究会
    • Related Report
      2023 Annual Research Report
  • [Presentation] Collective Cargo Transport and Sorting with Molecular Swarms2023

    • Author(s)
      Nathanael Aubert-Kato, Geoff Nitschke, Ibuki Kawamata, Akira Kakugo
    • Organizer
      ALIFE 2023: Ghost in the Machine: Proceedings of the 2023 Artificial Life Conference
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular-scale robots built from DNA and their self-assembly2023

    • Author(s)
      Kawamata Ibuki
    • Organizer
      Workshop on optimization of molecular robot swarms for the emergence of collective behaviors
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] Prediction of DNA structure volume2023

    • Author(s)
      Hyakuzuka Maya, Aubert-Kato Nathanael
    • Organizer
      Workshop on optimization of molecular robot swarms for the emergence of collective behaviors
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] Development of automated chemical reaction network design and simulation tools2023

    • Author(s)
      Yoshida Ruka, Aubert-Kato Nathanael
    • Organizer
      Workshop on optimization of molecular robot swarms for the emergence of collective behaviors
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] Reservoir Property Enhancement for Molecular Computing2023

    • Author(s)
      Ito Mika, Aubert-Kato Nathanael
    • Organizer
      Workshop on optimization of molecular robot swarms for the emergence of collective behaviors
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] Synthetic DNA reaction-diffusion system for pattern formation, materialization, and wrinkling2023

    • Author(s)
      Kawamata Ibuki
    • Organizer
      Seminar of Laboratoire Jean Perrin
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] Neural coding of temperature with a DNA-based spiking chemical neuron2022

    • Author(s)
      Aubert-Kato Nathanael
    • Organizer
      第6回分子ロボティクス年次大会
    • Related Report
      2022 Research-status Report
  • [Presentation] 化学反応ネットワークを用いた Reservoir Computingの性能向上2022

    • Author(s)
      Ito Mika, Aubert-Kato Nathanael
    • Organizer
      第6回分子ロボティクス年次大会
    • Related Report
      2022 Research-status Report
  • [Presentation] 化学反応ネットワーク最適化ツールの拡張2022

    • Author(s)
      Yoshida Ruka, Aubert-Kato Nathanael
    • Organizer
      第6回分子ロボティクス年次大会
    • Related Report
      2022 Research-status Report
  • [Presentation] 学習機能を備えたDNA分子回路の設計と反応挙動の予測2022

    • Author(s)
      川又生吹, 村田智
    • Organizer
      SSI 2022
    • Related Report
      2022 Research-status Report
  • [Presentation] Counting the number of input addition by DNA reaction system driven by DNA polymerase2022

    • Author(s)
      Ibuki Kawamata, Motokazu Furuya, Satoshi Murata
    • Organizer
      the 28th International Conference on DNA Computing and Molecular Programming (DNA28)
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research
  • [Presentation] スケーラブルな大規模DNAトラス構造体の設計と構築2022

    • Author(s)
      山下雄大, 川又生吹, 村田智
    • Organizer
      第6回分子ロボティクス年次大会
    • Related Report
      2022 Research-status Report
  • [Presentation] 人工細胞間でのDNA配列情報の伝達に向けた分子トランスデューサの研究2022

    • Author(s)
      吉田海, 川又生吹, 濵田省吾, 松林秀明, 村田智, 野村 M. 慎一郎
    • Organizer
      第6回分子ロボティクス年次大会
    • Related Report
      2022 Research-status Report
  • [Presentation] Construction of bio-inspired artificial molecular systems and devices based on DNA nanotechnology2022

    • Author(s)
      Sato Yusuke
    • Organizer
      The 6th FRIS and TFC Collaboration Event “Workshop on Biosystems Design From nanotechnology to microfluidics in biotechnology”
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] Toward the construction of cell-like molecular systems based on DNA nanotechnology"2022

    • Author(s)
      Sato Yusuke
    • Organizer
      第60回生物物理学会年会
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] Reaction-diffusion system using DNA computing and hydrogel platform2022

    • Author(s)
      Kawamata Ibuki
    • Organizer
      International Workshop on Molecular Cybernetics: Toward Chemical AI
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] DNA分子を用いてプログラミングした化学反応ネットワーク2022

    • Author(s)
      川又生吹
    • Organizer
      発動分子科学 × 分子サイバネティクス共催ワークショップ
    • Related Report
      2021 Research-status Report
  • [Presentation] 分子ナノテクノロジーとは, OS 分子ロボティクス・分子サイバネティクス1/2 チュートリアル2022

    • Author(s)
      川又生吹
    • Organizer
      第34回自律分散システム・シンポジウム
    • Related Report
      2021 Research-status Report
  • [Presentation] A framework for molecular-based reservoir computing2021

    • Author(s)
      Aubert-Kato Nathanael
    • Organizer
      日韓3女子大シンポジウム
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] Emergence of structures from parasitic species in a spatially distributed molecular system2021

    • Author(s)
      Aubert-Kato Nathanael、Gines Guillaume、Fujii Teruo、Rondelez Yannick
    • Organizer
      ALIFE 2021: The 2021 Conference on Artificial Life
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research
  • [Presentation] Development of Browser-Based Software for Intuitively Manipulating and Integrating DNA Nanostructures2021

    • Author(s)
      Kawamata Ibuki, Aradachi Sho, Murata Satoshi
    • Organizer
      60th Annual Conference of the Society of Instrument and Control Engineers of Japan (SICE)
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research
  • [Presentation] Pattern formation on capsule-like DNA hydrogels induced by lateral phase separation of DNA nanostructure2021

    • Author(s)
      Sato Yusuke, Takinoue Masahiro
    • Organizer
      The 27th International Conference on DNA Computing and Molecular Programming (DNA 27)
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research
  • [Presentation] DNAナノ構造の側方相分離と細胞サイズ相分離DNAベシクル2021

    • Author(s)
      佐藤佑介, 瀧ノ上正浩
    • Organizer
      第5回分子ロボティクス年次大会
    • Related Report
      2021 Research-status Report
  • [Presentation] 側方相分離が誘起するカプセル様DNAハイドロゲル表面のパターン形成2021

    • Author(s)
      佐藤佑介, 瀧ノ上正浩
    • Organizer
      第59回生物物理学会年会
    • Related Report
      2021 Research-status Report
  • [Presentation] Molecular programming of swarms for ALife2020

    • Author(s)
      Leo Cazenille, Nicolas Lobato-Dauzier, Nathanael Aubert-Kato
    • Organizer
      ALIFE 2020
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] Current and Future Trends of DNA Molecule Computation2019

    • Author(s)
      Ibuki Kawamata
    • Organizer
      SIGNAC 第33回研究会 人工知能学会合同研究会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] VAEによる分子反応ネットワークの探索2019

    • Author(s)
      Erika Yamazaki & Nathanael Aubert-Kato
    • Organizer
      SIGNAC 第33回研究会 人工知能学会合同研究会
    • Related Report
      2019 Research-status Report
  • [Presentation] Creation and control of DNA micro droplets based on phase transition and sequence design2019

    • Author(s)
      Yusuke Sato, Tetsuro Sakamoto, Masahiro Takinoue
    • Organizer
      The 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 筒状DNAオリガミ構造によるリポソーム内外の分子拡散にむけて2019

    • Author(s)
      川又生吹, 岩渕祥璽, 野村 M. 慎一郎, 村田智
    • Organizer
      SIG-MBI
    • Related Report
      2019 Research-status Report
  • [Presentation] Toward molecular diffusion through liposome membrane using DNA origami structure2019

    • Author(s)
      Ibuki Kawamata, Shoji Iwabuchi, Shin-ichiro M. Nomura, Satoshi Murata
    • Organizer
      Japanese Society for Cell Synthesis Research 12.0
    • Related Report
      2019 Research-status Report
  • [Presentation] A database to store design information of DNA nanostructure2019

    • Author(s)
      Ibuki Kawamata, Sho Aradachi, Satoshi Murata
    • Organizer
      Molecular Robotics Session, Chem-Bio Informatics Society (CBI) Annual Meeting 2019
    • Related Report
      2019 Research-status Report
  • [Presentation] Programmable DNA reaction-diffusion system for a Voronoi pattern formation in hydrogel2019

    • Author(s)
      Keita Abe, Ibuki Kawamata, Shin-ichiro M. Nomura, Satoshi Murata
    • Organizer
      CBI学会2019年大会
    • Related Report
      2019 Research-status Report
  • [Book] DNA origami入門2021

    • Author(s)
      川又生吹、鈴木勇輝、村田 智
    • Total Pages
      264
    • Publisher
      オーム社
    • ISBN
      9784274227134
    • Related Report
      2021 Research-status Report 2020 Research-status Report
  • [Remarks] Molecular programming of swarms for ALife

    • Related Report
      2020 Research-status Report
  • [Funded Workshop] Research workshop on collective behaviours at the interface of biophysics and swarm robotics2024

    • Related Report
      2023 Annual Research Report
  • [Funded Workshop] Workshop on optimization of molecular robot swarms for the emergence of collective behaviors2023

    • Related Report
      2022 Research-status Report

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Published: 2019-10-10   Modified: 2025-01-30  

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