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ハイブリッドQM/MM経路積分法による核の量子効果を考慮した溶媒和機構の解明

Research Project

Project/Area Number 20038041
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionYokohama City University

Principal Investigator

立川 仁典  Yokohama City University, 生命ナノシステム科学研究科, 教授 (00267410)

Co-Investigator(Kenkyū-buntansha) 志賀 基之  日本原子力研究開発機構, システム計算科学センター, 研究員 (40370407)
Project Period (FY) 2008 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥3,100,000 (Direct Cost: ¥3,100,000)
Fiscal Year 2009: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 2008: ¥1,700,000 (Direct Cost: ¥1,700,000)
Keywords水素 / 化学物理 / 原子・分子物理 / 経路積分 / 水和機構 / フッ化物イオン水和クラスター
Research Abstract

これまで我々は、電子核混合系を量子力学的に取り扱うため、第一原理経路積分分子動力学(path integral molecular dynamics (PIMD))法の開発・実装および具体的応用計算を実行し、常温においても核の量子効果が重要であることを見出してきた。平成21年度は、低温領域における量子効果を効率良く取込むために、20年度に作成した4次の経路積分分子動力学法をより効率的にするために、4次の経路積分ハイブリッドモンテカルロ(PIHMC)法を開発し、フッ化物イオン水和クラスターに応用した。
ハイブリッドモンテカルロ(HMC)法は、MC法における試行配置生成の過程をMD法で置き換える手法である。これにより、MD法の利点である1ステップで全核配置を更新できることが可能となる。しかしながら単純に4次のTrotter展開をHMC法に適用すると、二階微分の計算が必要となり計算コストが高くなってしまう。そこで、試行配置生成に2次のTrotter展開の力と、採択・棄却に4次の有効ポテンシャルを組み合わせることで、新しい経路積分ハイブリッドモンテカルロ(PIHMC)法を開発した。本手法を水素分子に適用したところ、2次展開では収束に128ビーズが必要であるのに対し、4次展開では16ビーズで収束し、さらに4次PIHMC法では二階微分の計算を回避することで、劇的に計算コストを抑えることができた。そこで本手法を用いて、フッ化物イオンー水クラスターの同位体構造を解析した。その結果、幾何学的同位体効果として、フッ素-酸素間距離はD体の方がH体に比べ長くなることを見出した。水素結合構造の水の配位数依存性として、配位数が増加するにつれフッ素-酸素間距離は長くなる一方、酸素-水素結合水素の距離は、短くなることも解った。

Report

(2 results)
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (38 results)

All 2010 2009 2008 Other

All Journal Article (28 results) (of which Peer Reviewed: 28 results) Presentation (8 results) Remarks (2 results)

  • [Journal Article] Systematic Improvement of Energy-Components by Simultaneous Optimization of Exponents and Centers of Gaussian-Type Function Basis Sets for Molecular Self-Consistent-Field Wave Functions.2010

    • Author(s)
      T.Ishimoto, M.Tachikawa
    • Journal Title

      J.Comp.Chem.Jpn. 9(Invited paper)

      Pages: 1-8

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Optimized Molecular Exponents on Gaussian Basis Sets for Hybrid Orbitals of Hydrocarbon Molecules.2010

    • Author(s)
      T.Ishimoto, M.Tachikawa
    • Journal Title

      J.Comp.Chem.Jpn. 9(Invited paper)

      Pages: 15-20

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Geometric Isotope Effect on Low Barrier Hydrogen-Bonding Systems of Acetic Acid Dimer, Formic Acid Dimer, and Their Anionic Clusters by Using the Multi-Component Molecular Orbital Method.2010

    • Author(s)
      M.Kaneko, T.Udagawa, M.Tachikawa
    • Journal Title

      J.Comp.Chem.Jpn. 9(Invited paper)

      Pages: 21-28

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Formation of Schiff-base for photoreaction mechanism of red shift of GFP spectra.2010

    • Author(s)
      J.Koseki, Y.Kita, M.Tachikawa
    • Journal Title

      Biophys.Chem. 147

      Pages: 140-145

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Efficient ab initio path integral hybrid Monte Carlo based on the fourth-order Trotter expansion : Application to fluoride ion-water cluster.2010

    • Author(s)
      K.Suzuki, M.Tachikawa, M.Shiaa
    • Journal Title

      J.Chem.Phys. 132

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The chemical shift of deprotonated water dimer : Ab initio path integral simulation.2010

    • Author(s)
      M.Shiga, K.Suzuki, M.Tachikawa
    • Journal Title

      J.Chem.Phys. 132

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] First-principles calculation and TEM, UPS, and TPD measurements for hydrogen adsorption on carbon nanowalls.2010

    • Author(s)
      Y.Kita, S.Hayashi, I.Kinoshita, M.Tachibana, M.Tachikaw a, K.Kobayashi, M.Tanimura
    • Journal Title

      J.Appl.Phys. (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evaluation of molecular integral of Cartesian Gaussian type basis function with complex-valued center coordinates and exponent via the McMurchie-Davidson recursion formula, and its application to electron dynamics.2009

    • Author(s)
      T.Kuchitsu, J.Okuda, M.Tachikawa
    • Journal Title

      Int.J.Quant.Chem. 109

      Pages: 540-548

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ab initio fragment molecular orbital (FMO) analysis of the structure of the phosphoinositide-binding peptide from gelsolin.2009

    • Author(s)
      M.Tada, T.Nagasima, T.Udagawa, M.Tachikawa, H.Sugawara
    • Journal Title

      J.Mol.Structure (Theochem) 897

      Pages: 149-153

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Path-integral molecular dynamics simulations of small hydrated sulfuric acid clusters H_2SO_4(H_2O)_n (n=1-6) on semiempirical PM6 potential surfaces.2009

    • Author(s)
      A.Kakizaki, H.Motegi, T.Yoshikawa, T.Takayanagi, M.Shiga, M.Tachikawa
    • Journal Title

      J.Mol.Structure (Theochem) 901

      Pages: 1-8

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nuclear quantum effects on molecular magnetic properties.2009

    • Author(s)
      Y.Kita, M.Tachikawa
    • Journal Title

      J.Mol.Structure (Theochem) 912

      Pages: 2-4

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Path-integral molecular dynamics simulations of hydrated hydrogen chloride cluster HCI (H_2O)_4 on a semiempirical potential energy surface.2009

    • Author(s)
      T.Takayanagi, K.Takahashi, A.Kakizaki, M.Shiga, M.Tachikawa
    • Journal Title

      Chem.Phys. 358

      Pages: 196-202

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ab initio post-HF study of guanine dimer isomers involving imino forms in gas phase.2009

    • Author(s)
      K.Takahashi, M.Tachikawa
    • Journal Title

      J.Mol.Structure (Theochem) 912

      Pages: 44-52

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical analysis of H/D geometric isotope effect on adenine-thymine base pair using multi-component molecular orbital method.2009

    • Author(s)
      T.Udagawa, M.Tachikawa
    • Journal Title

      J.Mol.Structure (Theochem) 912

      Pages: 63-66

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ab initio quantum Monte Carlo study of the positronic hydrogen cy anide molecule.2009

    • Author(s)
      Y.Kita, R.Maezono, M.Tachikawa, M.Towler, R.J.Needs
    • Journal Title

      J.Chem.Phys. 131

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Positron binding properties for F^-(H_2O)_n and Cl^-(H_2O)_n (n=0-3) clusters.2009

    • Author(s)
      Y.Kita, M.Tachikawa
    • Journal Title

      Chem.Phys.Lett. 482

      Pages: 201-206

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Path-integral molecular dynamics simulations of glycine (H_2O)_n (n=1-7) clusters on semiempirical PM6 potential energy surfaces.2009

    • Author(s)
      T.Yoshikawa, H. otegi, A.Kakizaki, T.Takayanagi, M.Shiga, M.Tachikawa
    • Journal Title

      Chem.Phys. 365

      Pages: 60-68

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nuclear Quantum Effect on Molecular Magnetic Properties for Low Barrier Hydrogen-bonded Systems Based on Multi-component Density Functional Theory.2009

    • Author(s)
      Y.Kita, T.Udagawa, M.Tachikawa
    • Journal Title

      Chem.Lett. 38

      Pages: 1156-1157

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multi-Component First-Principles Calculation on Isotope Effect in Hydrogen-Bonded Dielectric Materials K_3H(SO_4)_2 and K_3D(SO_4)_22008

    • Author(s)
      M. Tachikawa
    • Journal Title

      Integrated Ferroelectrics 100

      Pages: 72-78

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ultraviolet Spectroscopy and Theoretical Calculations of Monoand Dihydrated Clusters of the Guanine Nucleosides : Possibility of Different Hydration Structures for Guanosine and 2' -Deoxyguano sine2008

    • Author(s)
      H. Saigusa, N. Mizuno, H. Asami, K. Takahashi, and M. Tachikawa
    • Journal Title

      Bull. Chem. Soc. Jap 81

      Pages: 1274-1281

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Temperature and isotope effects on water cluster ions with path integral molecular dynamics based on 4th order Trotter exmansion2008

    • Author(s)
      K. Suzuki, M. Shiga, and M. Tachikawa
    • Journal Title

      J. Chem. Phys 129

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular dynamics simulations of small glycine-(H_2O)_n=2-7) clusters on semiempirical PM6 potential energy surfaces2008

    • Author(s)
      T. Takayanagi, T. Yoshikawa, A. Kakizaki, M. Shiga, and M. Tachikawa
    • Journal Title

      J. Mol. Structure (Theochem) 869

      Pages: 29-36

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Quantum Monte Carlo study of porphyrin transition metal complexes2008

    • Author(s)
      J. Koseki, R. Maezono, M. Tachikawa, M. D. Towler, and R. J. Needs
    • Journal Title

      J. Chem. Phys 128

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Film Formation from Mixed Solutions of 1, 3, 5-Triazine-2, 4-dithione and Phosphate onto Au, Ag, and Cu Substrates2008

    • Author(s)
      M. Yamamoto, M. Suzuki, M. Tachikawa, A. Fujishima, T. Miyazaki, H. Hisamitsu, K. Kojima, and Y. Kadoma
    • Journal Title

      J. Phys. Chem. C 112

      Pages: 6914-6923

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Simultaneous analytical optimization of variational parameters in Gaussian-type functions with full configuration interaction of multi-component molecular orbital method by elimination of translational and rotational methods : Application to isotopomers of the hydrogen molecule2008

    • Author(s)
      T. Ishimoto, M. Tachikawa, and U. Nagashima
    • Journal Title

      J. Chem. Phys 128

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Geometric Isotope Effect on the N_2H_7^+ Cation and N_2H_5^- Anion by Ab Initio Path Integral Molecular Dynamics Simulation2008

    • Author(s)
      H. Ishibashi, A. Hayashi, M. Shiga, and M. Tachikawa
    • Journal Title

      ChemPhysChem (Communication) 9

      Pages: 383-387

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ab initio interpretation of Hund's rule for the methylene molecule : Variational optimization of its molecular geometries and energy component analysis2008

    • Author(s)
      Y. Maruyama, K. Hongo, M. Tachikawa, Y. Kawazoe, and H. Yasuhara
    • Journal Title

      Int. J. Quant. Chem 108

      Pages: 731-743

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analytical optimization of exponent values in protonic and deuteronic Gaussian-type functions by elimination of translational and rotational motions from multi-component molecular orbital scheme2008

    • Author(s)
      T. Ishimoto, M. Tachikawa, and U. Nagashima
    • Journal Title

      Int. J. Quant. Chem 108

      Pages: 472-481

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] 多成分量子モンテカルロ法による陽電子ハロゲン化物複合体の理論的解析2009

    • Author(s)
      竹田知弘、北幸海、前園涼、立川仁典
    • Organizer
      日本物理学会第63回年次大会
    • Place of Presentation
      池袋
    • Year and Date
      2009-03-27
    • Related Report
      2008 Annual Research Report
  • [Presentation] 第一原理経路積分分子動力学法を用いた電子スペクトルの解析2009

    • Author(s)
      杉本昌崇、志賀基之、立川仁典
    • Organizer
      日本物理学会第63回年次大会
    • Place of Presentation
      池袋
    • Year and Date
      2009-03-27
    • Related Report
      2008 Annual Research Report
  • [Presentation] Ab initio経路積分分子動力学法を用いた水酸化ナトリウム水和クラスターの解析2009

    • Author(s)
      小泉亮人、志賀基之、立川仁典
    • Organizer
      日本物理学会第63回年次大会
    • Place of Presentation
      池袋
    • Year and Date
      2009-03-27
    • Related Report
      2008 Annual Research Report
  • [Presentation] Ab initio経路積分分子動力学法を用いた電子スペクトルの解析2008

    • Author(s)
      杉本昌崇、志賀基之、立川仁典
    • Organizer
      第2回分子科学討論会
    • Place of Presentation
      福岡
    • Year and Date
      2008-09-26
    • Related Report
      2008 Annual Research Report
  • [Presentation] 多成分量子モンテカルロ法を用いた全自由度量子計算2008

    • Author(s)
      北幸海、前園涼、立川仁典
    • Organizer
      第2回分子科学討論会
    • Place of Presentation
      福岡
    • Year and Date
      2008-09-25
    • Related Report
      2008 Annual Research Report
  • [Presentation] 経路積分法を用いた水イオンクラスターの同位体効果と温度依存性2008

    • Author(s)
      鈴木机倫、志賀基之、立川仁典
    • Organizer
      日本物理学会2008年秋季大会
    • Place of Presentation
      岩手大学
    • Year and Date
      2008-09-22
    • Related Report
      2008 Annual Research Report
  • [Presentation] 多成分量子モンテカルロ法による水素イオンクラスターの研究2008

    • Author(s)
      北幸海、前園涼、立川仁典
    • Organizer
      日本物理学会2008年秋季大会
    • Place of Presentation
      岩手大学
    • Year and Date
      2008-09-22
    • Related Report
      2008 Annual Research Report
  • [Presentation] Geometric Isotope Effect on N_2H_7^+ Cation by Ab Initio Path Integral Molecular Dynamics Simulation2008

    • Author(s)
      Masanori Tachikawa
    • Organizer
      World Association of Theoretical and Computational Chemists (WATOC2008)
    • Place of Presentation
      Sydney, Australia
    • Year and Date
      2008-09-16
    • Related Report
      2008 Annual Research Report
  • [Remarks]

    • URL

      http://www-user.yokohama-cu.acjp/%7etachi/html/Research/Publication/publication.html

    • Related Report
      2008 Annual Research Report
  • [Remarks]

    • URL

      http://www-useryokohama-cu.acjp/%7etachi/htmlif_Research.htm

    • Related Report
      2008 Annual Research Report

URL: 

Published: 2008-04-01   Modified: 2018-03-28  

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