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Dynamics of intrinsically disordered proteins and their functional roles

Research Project

Project/Area Number 20227009
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Biophysics
Research InstitutionYokohama City University

Principal Investigator

NISHIMURA Yoshifumi  横浜市立大学, 大学院・生命ナノシステム科学研究科, 教授 (70107390)

Co-Investigator(Kenkyū-buntansha) AKASHI Satoko  横浜市立大学, 大学院・生命ナノシステム科学研究科, 准教授 (10280728)
NAGADOI Aritaka  横浜市立大学, 大学院・生命ナノシステム科学研究科, 助教 (50336591)
Project Period (FY) 2008 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥124,800,000 (Direct Cost: ¥96,000,000、Indirect Cost: ¥28,800,000)
Fiscal Year 2012: ¥31,200,000 (Direct Cost: ¥24,000,000、Indirect Cost: ¥7,200,000)
Fiscal Year 2011: ¥31,200,000 (Direct Cost: ¥24,000,000、Indirect Cost: ¥7,200,000)
Fiscal Year 2010: ¥31,200,000 (Direct Cost: ¥24,000,000、Indirect Cost: ¥7,200,000)
Fiscal Year 2009: ¥31,200,000 (Direct Cost: ¥24,000,000、Indirect Cost: ¥7,200,000)
KeywordsNMR / 転写因子 / クロマチン / 動的構造 / 天然変性状態
Research Abstract

Here, we have examined dynamical structures of intrinsically disordered proteins including heterochromatin-related proteins, Chp1 and Swi6 in addition to histone multimers by NMR and MS. The chromodomain (CD) of a heterochromatin-related protein, Chp1, possesses novel RNA-binding activity as well as histone H3K9me3-binding activity. NMR revealed that the presence of a small helix in the N-terminal outside region of Chp1 CD bound to histone H3K9me3. Addition of cenRNA led to chemical shift changes of amide protons for residues within this helix and a C-terminal helix in Chp1 CD. In addition we revealed the solution structure of H2A/H2B and its complex with the C-terminal disordered acidic domain of histone chaperone Nap1.

Assessment Rating
Verification Result (Rating)

B

Report

(7 results)
  • 2013 Research Progress Assessment (Verification Result) ( PDF )
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report   Self-evaluation Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (161 results)

All 2013 2012 2011 2010 2009 2008 2007 Other

All Journal Article (43 results) (of which Peer Reviewed: 32 results,  Open Access: 1 results) Presentation (105 results) (of which Invited: 4 results) Book (2 results) Remarks (8 results) Patent(Industrial Property Rights) (3 results) (of which Overseas: 2 results)

  • [Journal Article] Gas-phase structure of the histone multimers characterized by ion mobility mass spectrometry and molecular dynamics simulation2013

    • Author(s)
      Saikusa K, Fuchigami S, Takahashi K, Asano Y, Nagadoi A, Tachiwana H, Kurumizaka H, Ikeguchi M, Nishimura Y, Akashi S
    • Journal Title

      Anal Chem

      Volume: 85 Issue: 8 Pages: 4165-4171

    • DOI

      10.1021/ac400395j

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterisation of an intrinsically disordered protein complex of Swi5-Sfr1 by ion mobility mass spectrometry and small-angle X-ray scattering2013

    • Author(s)
      Saikusa K, Kuwabara N, Kokabu Y, Inoue Y, Sato M, Iwasaki H, Shimizu T, Ikeguchi M, Akashi S
    • Journal Title

      Analys

      Volume: 138 Issue: 5 Pages: 1441-14499

    • DOI

      10.1039/c2an35878f

    • NAID

      120006557136

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structures of penicillin-binding protein 3 (PBP3) from methicillin-resistant Staphylococcus aureus in the apo and cefotaxime-bound forms2012

    • Author(s)
      Yoshida H, Kawai F, Obayashi E, Akashi S, Roper DI, Tame JR, Park SY
    • Journal Title

      J Mol Biol

      Volume: 423 Issue: 3 Pages: 351-364

    • DOI

      10.1016/j.jmb.2012.07.012

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Intrinsic Nucleic Acid-Binding activity of Chp1 Chromodomain Is Required for Heterochromatic Gene Silencing2012

    • Author(s)
      Ishida M, Shimojo H, Hayashi A, Kawaguchi R, Ohtani Y, Uegaki K, Nishimura Y, Nakayama J
    • Journal Title

      Mol Cell

      Volume: 47 Issue: 2 Pages: 228-241

    • DOI

      10.1016/j.molcel.2012.05.017

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Functions of homo- and hetero-oligomers of human Nucleoplasmin/Nucleophosmin family proteins NPM1, NPM2, and NPM3 during sperm chromatin remodeling2012

    • Author(s)
      Okuwaki M, Sumi A, Hisaoka M, Saotome-Nakamura A, Akashi S, Nishimura Y, Nagata K
    • Journal Title

      Nucleic Acids Res

      Volume: 40 Issue: 11 Pages: 4861-4878

    • DOI

      10.1093/nar/gks162

    • Related Report
      2012 Annual Research Report 2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Impact of limited oxidation on protein ion mobility and structure of importance to footprinting by radical probe mass spectrometry2012

    • Author(s)
      Downard KM, Maleknia SD, Akashi S
    • Journal Title

      Rapid Commun Mass Spectrom

      Volume: 26 Pages: 226-230

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Intrinsic Nucleic Acid-Binding activity of Chp1 Chromodomain Is Required for Heterochromatic Gene Silencin.2012

    • Author(s)
      Mayumi Ishida, Hideaki Shimojo, Aki Hayashi, Rika Kawaguchi, Yasuko Ohtani, Koichi Uegaki, Yoshifumi Nishimura, Jun-ichi Nakayama.
    • Journal Title

      Cell.

      Volume: 47 Pages: 228-241

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene2011

    • Author(s)
      Horikoshi N, Tachiwana H, Saito K, Osakabe A, Sato M, Yamada M, Akashi S, Nishimura Y, Kagawa W, Kurumizaka H
    • Journal Title

      Acta Crystallogr D Biol Crystallog

      Volume: 67 Issue: 2 Pages: 112-118

    • DOI

      10.1107/s0907444910051711

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Free-energy Landscape for Coupled Folding and Binding of an Intrinsically Disordered Protein in Explicit Solvent from Detailed All-atom Computations2011

    • Author(s)
      Higo J, Nishimura Y, Nakamura H
    • Journal Title

      J Am Chem Soc

      Volume: 133 Issue: 27 Pages: 10448-10458

    • DOI

      10.1021/ja110338e

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fission yeast Swi5-Sfr1 protein complex, an activator of Rad51 recombinase, forms an extremely elongated dogleg-shaped structure2011

    • Author(s)
      Kokabu Y, Murayama Y, Kuwabara N, Oroguchi T, Hashimoto H, Tsutsui Y, Nozaki N, Akashi S, Unzai S, Shimizu T, Iwasaki H, Sato M, Ikeguchi M
    • Journal Title

      J Biol Chem

      Volume: 286 Issue: 50 Pages: 43569-43576

    • DOI

      10.1074/jbc.m111.303339

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Homology-modelled structure of the βB2B3-crystallin heterodimer studied by ion mobility and radical probe MS2011

    • Author(s)
      Downard KM, Kokabu Y, Ikeguchi M, Akashi S
    • Journal Title

      FEBS J

      Volume: 278 Pages: 4044-4054

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] バンド生物学とインパクトファクター2011

    • Author(s)
      西村善文
    • Journal Title

      生化学

      Volume: 83 Pages: 809-809

    • NAID

      10029737637

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] 「バンド生物学」とインパクトファクター2011

    • Author(s)
      西村善文
    • Journal Title

      生化学

      Volume: 83 Pages: 809-809

    • NAID

      10029737637

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Structural and bioche mical analyses of thehuman PAD4 var iant encoded by a functional haplot ype gene.2011

    • Author(s)
      Horikoshi, N., Tachiwana, H., Saito, K., Osakabe, A., Sato, M., Yamada, M., Akashi, S., Nishimura, Y., Kagawa, W., Kurumizaka, H.
    • Journal Title

      Acta Crystal.D 67

      Pages: 112-118

    • Related Report
      2010 Self-evaluation Report
  • [Journal Article] Deimination stabilizes histone H2A/H2B dimers as revealed by electrospray ionization mass spectrometry2010

    • Author(s)
      Shimoyama S, Nagadoi A, Tachiwana H, Yamada M, Sato M, Kurumizaka H, Nishimura Y, Akashi S.
    • Journal Title

      J Mass Spectrom

      Volume: 45 Issue: 8 Pages: 900-908

    • DOI

      10.1002/jms.1778

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Side-chain conformational changes of transcription factor PhoB upon DNA binding: a population-shift mechanism2010

    • Author(s)
      Yamane T, Okamura H, Nishimura Y,Kidera A, Ikeguchi M
    • Journal Title

      J Am Chem Soc

      Volume: 132 Issue: 36 Pages: 12653-12659

    • DOI

      10.1021/ja103218x

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] The structure of the N-terminal regulatory domain of a plant NADPH oxidase and its functional implications2010

    • Author(s)
      Oda T, Hashimoto H, Kuwabara N, Akashi S, Hayashi K, Kojima C, Wong HL, Kawasaki T, Shimamoto K, Sato M, Shimizu T
    • Journal Title

      J Biol Chem

      Volume: 285 Pages: 1435-1445

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Guidelines for reporting the use of capillary electrophoresis in proteomics2010

    • Author(s)
      Domann PJ, Akashi S, Barbas C, Huang L, Lau W, Legido-Quigley C, McClean S, Neususs C, Perrett D, Quaglia M, Rapp E, Smallshaw L, Smith NW, Smyth WF, Taylor CF
    • Journal Title

      Nat Biotechnol

      Volume: 28 Issue: 7 Pages: 654-655

    • DOI

      10.1038/nbt0710-654b

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of human REV7 in complex with a human REV3 fragment and structural implication of the interaction between DNA polymerase zeta and REV12010

    • Author(s)
      Hara K, Hashimoto H, Murakumo Y, Kobayashi S, Kogame T, Unzai S, Akashi S, Takeda S, Shimizu T, Sato M
    • Journal Title

      J Biol Chem

      Volume: 285 Issue: 40 Pages: 12299-12307

    • DOI

      10.1074/jbc.

    • Related Report
      2012 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Deiminatio nstabilizes histone H2A/H2B dimers as revealed byelectrospray ionizati on mass spectrometry.2010

    • Author(s)
      Shimoyama, S.Nagadoi, A., Tachiwana, H., Yamada, M., Sato, M., Kurumizaka, H., Nishimura, Y., Akashi, S.
    • Journal Title

      J.Mass.Spectrom 45

      Pages: 900-908

    • Related Report
      2010 Self-evaluation Report
  • [Journal Article] Side-chain conformational changes of transcription factor PhoB upon DNA binding : a population-shift mechanism2010

    • Author(s)
      Yamane T, Okamura H, Nishimura Y, Kidera A, Ikeguchi M
    • Journal Title

      Journal of the American Chemical Society

      Volume: 132 Pages: 12653-12659

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deimination stabilizes histone H2A/H2B dimers as revealed by electrospray ionization mass spectrometry2010

    • Author(s)
      Shimoyama S., Nagadoi A., Tachiwana H., Yamada M., Sato M., Kurumizaka H., Akashi S., Nishimura Y.
    • Journal Title

      Journal of Mass Spectrometry

      Volume: 22 Pages: 900-908

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The structure of the N-terminal regulatory domain of a plant NADPH oxidase and its functional implications2010

    • Author(s)
      Oda, T., Hashimoto, H., Kuwabara, N., Akashi, S., Hayashi, K., Kojima, C., Wong, H.L., Kawasaki, T., Shimamoto, K., Sato, M., Shimizu, T.
    • Journal Title

      J Biol Chem. 285

      Pages: 1435-1445

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Purification, crystallization and initial X-ray diffraction study of human REV7 in complex with a REV3 fragment2009

    • Author(s)
      Hara K, Shimizu T, Unzai S, Akashi S, Sato M, Hashimoto H
    • Journal Title

      Acta Crystallogr Sect F Struct Biol Cryst Commun

      Volume: 65 Issue: 12 Pages: 1302-1305

    • DOI

      10.1107/s1744309109046181

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Self-Assembled Protein Nanotube with High Aspect Ratio2009

    • Author(s)
      Miranda FF, Iwasaki K, Akashi S, Sumitomo K, Kobayashi M, Yamashita I, Tame JR, Heddle JG
    • Journal Title

      Small

      Volume: 5 Issue: 18 Pages: 2077-2084

    • DOI

      10.1002/smll.200900667

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] The nature of the TRAP-Anti-TRAP complex2009

    • Author(s)
      Watanabe M, Heddle JG, Kikuchi K, Unzai S, Akashi S, Park SY, Tame JR
    • Journal Title

      Proc Natl Acad Sci U S A

      Volume: 106 Issue: 7 Pages: 2176-2181

    • DOI

      10.1073/pnas.0801032106

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] RNA and protein complexes of TRAP characterized by mass spectrometry2009

    • Author(s)
      Akashi S, Watanabe M, Heddle JG, Unzai S, Park SY, Tame JR
    • Journal Title

      Anal Chem

      Volume: 81 Issue: 6 Pages: 2218-2226

    • DOI

      10.1021/ac802354j

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] 巨大タンパク質の質量分析2009

    • Author(s)
      明石知子
    • Journal Title

      ぶんせき

      Pages: 422-427

    • Related Report
      2012 Final Research Report
  • [Journal Article] A Self-Assembled Protein Nanotube with High Aspect Ratio2009

    • Author(s)
      Miranda, F.F., Iwasaki, K., Akashi.S., Sumitomo, K., Kobayashi, M., Yamashita, I., Tame, J.R., Heddle, J.G.
    • Journal Title

      Small 5

      Pages: 2077-2084

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Purification, crystallization and initial X-ray diffraction study of human REV7 in complex with a REV3 fragment2009

    • Author(s)
      Hara, K., Shimizu, T., Unzai, S., Akashi, S., Sato, M., Hashimoto, H.
    • Journal Title

      Acta Crystallogr Sect F Struct Biol Cryst Commun F65

      Pages: 1302-1305

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 巨大タンパク質の質量分析2009

    • Author(s)
      明石知子
    • Journal Title

      ぶんせき 55

      Pages: 422-427

    • Related Report
      2009 Annual Research Report
  • [Journal Article] Crystal Structures of the Clock Protein EA4 from the Silkworm Bombyx mori2008

    • Author(s)
      Hiraki T, Shibayama N, Akashi S, Park SY
    • Journal Title

      J Mol Biol

      Volume: 377 Issue: 3 Pages: 630-635

    • DOI

      10.1016/j.jmb.2008.01.020

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Water-mediated interaction between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment2008

    • Author(s)
      Yamane T, Okamura H, Ikeguchi M,Nishimura Y, Kidera A
    • Journal Title

      Proteins

      Volume: 71 Issue: 4 Pages: 1970-1983

    • DOI

      10.1002/prot.21874

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural insight into the FIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH2008

    • Author(s)
      Okuda M, Tanaka A, Satoh M, Mizuta S, Takazawa M, Ohkuma Y, Nishimura Y.
    • Journal Title

      EMBO J

      Volume: 27 Pages: 1161-1171

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural characterization of human general transcription factor TFIIF in solution2008

    • Author(s)
      Akashi S, Nagakura S, Yamamoto S, Okuda M, Ohkuma Y, Nishimura Y.
    • Journal Title

      Protein Sci

      Volume: 17 Issue: 3 Pages: 389-400

    • DOI

      10.1110/ps.073258108

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Mass Spectrometric Approach to the Study of DNA-Bonding Proteins: Interaction of Human TRF2 with Telomeric DNA2008

    • Author(s)
      Sperry JB, Shi X, Rempel DL, Nishimura Y, Akashi S, Gross ML
    • Journal Title

      Biochemistry

      Volume: 47 Issue: 6 Pages: 1797-1807

    • DOI

      10.1021/bi702037p

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Novel Structural and Functional Mode of a Knot Essential for RNA Binding Activity of the Esa1 Presumed Chromodomain2008

    • Author(s)
      Shimojo H, Sano N, Moriwaki Y, Okuda M, Horikoshi M, Nishimura Y
    • Journal Title

      J Mol Biol

      Volume: 378 Pages: 987-1001

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] レーザースプレー質量分析が可能にした生体高分子複合体の結合親和性の定量的な解析2008

    • Author(s)
      明石知子、史向国、高見澤淳、 西村善文、平岡賢三
    • Journal Title

      J. MassSpectrom. Soc. Jpn

      Volume: 22 Pages: 155-161

    • NAID

      10021086963

    • Related Report
      2012 Final Research Report
  • [Journal Article] 転写・翻訳 真核生物の転写系を中心に2008

    • Author(s)
      西村善文
    • Journal Title

      蛋白質・核酸・酵素

      Volume: 5 Pages: 620-623

    • Related Report
      2012 Final Research Report
  • [Journal Article] 基本転写因子TFIIE の構造と TFIIH との相互作用2008

    • Author(s)
      西村善文、奥田昌彦
    • Journal Title

      生化学

      Volume: 80 Pages: 501-510

    • NAID

      10021192114

    • Related Report
      2012 Final Research Report
  • [Journal Article] Novel Structural and Functional Mode of a Knot Essential for RNA Binding Activity of the Esa1 Presumed Chromodomain.2008

    • Author(s)
      Shimojo, H., Sano, N., Moriwaki, Y., Okuda, M., Horikoshi, M., Nishimura, Y.
    • Journal Title

      J.Mol.Biol. 378

      Pages: 987-1001

    • Related Report
      2010 Self-evaluation Report
  • [Journal Article] Structural insight into the TFIIE/TFIIH interaction : TFIIE and p53 share the binding region on TFIIH.2008

    • Author(s)
      Okuda, M., Tanaka, A., Satoh, M., Mizuta, S., Takazawa, M., Ohkuma, Y., Nishimura, Y
    • Journal Title

      EMBO J. 27

      Pages: 1161-1171

    • Related Report
      2010 Self-evaluation Report
  • [Journal Article] Structural characterization of human general transcription factor TFIIF in solution.2008

    • Author(s)
      Akashi, S., Nagakura, S., Yamamoto, S., Okuda, M., Ohkuma, Y., Nishimura, Y.
    • Journal Title

      Protein Sci. 17

      Pages: 389-400

    • Related Report
      2010 Self-evaluation Report
  • [Presentation] Characterization of IDPs by Mass Spectrometry and MD simulation2013

    • Author(s)
      Satoko Akashi
    • Organizer
      2nd International Symposium on Intrinsically Disordered Proteins
    • Place of Presentation
      理化学研究所交流棟ホール(神奈川県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 質量分析による構造生物学2013

    • Author(s)
      明石知子
    • Organizer
      中性子連携研究会(第4 回中性子小角散乱解析法研究会)
    • Place of Presentation
      京都大学東京オフィス(東京都)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Structural analysis of Chip1 chromodomain required for heterochromatin assembly2012

    • Author(s)
      Nishimura Y
    • Organizer
      Symposium on the Structure and Folding of Disease Related Proteins
    • Place of Presentation
      韓国・Structural Research Center for Innovative Drug Development
    • Year and Date
      2012-07-06
    • Related Report
      2012 Final Research Report
  • [Presentation] Behavior of Intrinsically Disordered Regions within a Protein Complex of Swi5-Sfr1 Characterized by Ion Mobility Mass Spectrometry2012

    • Author(s)
      Kazumi Saikusa, Naoyuki Kuwabara, Yuichi Kokabu, Mamoru Sato, Hiroshi Iwasaki, Mitsunori Ikeguchi, Toshiyuki Shimizu, and Satoko Akashi
    • Organizer
      The 60th ASMS Conference on Mass Spectrometry and Allied Topics.
    • Place of Presentation
      Vancouver Convention Center, Canada
    • Related Report
      2012 Annual Research Report
  • [Presentation] Application of Homology Modelling, Ion Mobility and Protein Footprinting in Unison to Characterize Protein Bimolecular Complexes2012

    • Author(s)
      Yuichi Kokabu, Mitsunori Ikeguchi, Satoko Akashi, Kevin Downard
    • Organizer
      The 60th ASMS Conference on Mass Spectrometry and Allied Topics
    • Place of Presentation
      Vancouver Convention Center, Canada
    • Related Report
      2012 Annual Research Report
  • [Presentation] Impact of Protein Oxidation on their Ion Mobility for Protein Footprinting Applications2012

    • Author(s)
      Simin Maleknia, Satoko Akashi, Kevin Downard
    • Organizer
      The 60th ASMS Conference on Mass Spectrometry and Allied Topics
    • Place of Presentation
      Vancouver Convention Center, Canada
    • Related Report
      2012 Annual Research Report
  • [Presentation] What happens on the histone multimers in the gas phase?2012

    • Author(s)
      Kazumi Saikusa, Sotaro Fuchigami, Kyohei Takahashi, Yuuki Asano, Aritaka Nagadoi, Hiroaki Tachiwana, Hitoshi Kurumizaka, Mitsunori Ikeguchi, Yoshifumi Nishimura, Satoko Akashi.
    • Organizer
      19th International Mass Spectrometry Conference.
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Behavior of intrinsically disordered regions within a protein complex ofSwi5-Sfr1 characterized by IM-MS and SAXS2012

    • Author(s)
      Kazumi Saikusa, Naoyuki Kuwabara, Yuichi Kokabu, Mamoru Sato, Hiroshi Iwasaki, Mitsunori Ikeguchi, Toshiyuki Shimizu, Satoko Akashi
    • Organizer
      19th International Conference on Mass Spectrometry
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Structure of a Beta-Crystallin Heterodimer by Ion Mobility and Radical Probe Mass Spectrometry2012

    • Author(s)
      Kevin Downard, Yuichi Kokabu, Mitsunori Ikeguchi, Satoko Akashi
    • Organizer
      19th International Conference on Mass Spectrometry
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Characterization of histone multimers in the gas phase by ion mobility mass spectrometry and molecular dynamics simulation.2012

    • Author(s)
      Kazumi Saikusa, Sotaro Fuchigami, Kyohei Takahashi, Yuuki Asano, Aritaka Nagadoi, Hiroaki Tachiwana, Hitoshi Kurumizaka, Mitsunori Ikeguchi, Yoshifumi Nishimura, Satoko Akashi.
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学(愛知県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Dynamics of nuclear proteins.2012

    • Author(s)
      Yoshifumi Nishimura.
    • Organizer
      Yokohama NMR The 3rd International Symposium on Drug Discovery and Design by NMR
    • Place of Presentation
      理化学研究所交流棟ホール(神奈川県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヘテロクロマチンタンパク質HP1αセリンリン酸化クロモドメインのNMR構造解析2012

    • Author(s)
      川口あゆみ、下條秀朗、濱田京子、中山潤一、西村善文
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      ウインク愛知(愛知県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヘテロクロマチン構造形成因子Swi6クロモドメインとヒストンH3K9me3ペプチドの複合体の構造解析2012

    • Author(s)
      中村紗里、下條秀朗、中山潤一、西村善文
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      ウインク愛知(愛知県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] テロメアDNAとhTRF2塩基性ドメインの相互作用解析2012

    • Author(s)
      鈴木啓介、下條秀朗、岩沢佳尚、村井元気、西村善文
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      ウインク愛知(愛知県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Chp1クロモドメインの立体構造解析2012

    • Author(s)
      下條秀朗、石田真由美、中山潤一、西村善文
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      ウインク愛知(愛知県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヒストンシャペロン hNap1のC末酸性ドメインとヒストンH2A/H2Bの相互作用2012

    • Author(s)
      森脇義仁、奥脇暢、永田恭介、戸所泰人、佐藤昌彦、長土居有隆、西村善文
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      ウインク愛知(愛知県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 固体NMRを用いたヌクレオソームおけるヒストンH2Aの構造解析2012

    • Author(s)
      戸所泰人、森脇義仁、長土居有隆、立和名博昭、胡桃坂仁志、西村善文
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      ウインク愛知(愛知県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ラマン分光法とNMRによる構造生物学2012

    • Author(s)
      西村善文
    • Organizer
      平成24年度日本分光学会年次講演会
    • Place of Presentation
      東京工業大学百年記念館(東京都)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] ヒストンシャペロン hNap1のC末酸性ドメインとヒストンH2A/H2Bの相互作用2012

    • Author(s)
      森脇義仁、奥脇暢、永田恭介、戸所泰人、佐藤昌彦、長土居有隆、西村善文
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 固体NMRを用いたクロマチン構造におけるヒストンの構造解析2012

    • Author(s)
      戸所泰人、森脇義仁、長土居有隆、立和名博昭、須賀則之、胡桃坂仁志、西村善文
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヘテロクロマチン形成因子HP1αセリンリン酸化クロモドメインのNMR構造解析2012

    • Author(s)
      川口あゆみ、下條秀朗、濱田京子、中山潤一、西村善文
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 出芽酵母ミニ染色体においてヒトテロメア配列およびテロメア結合因子がヌクレオソーム形成に及ぼす影響2012

    • Author(s)
      市川雄一、諸橋伸行、半田圭汰、西村善文、胡桃坂仁志、清水光弘
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 出芽酵母のUme6のactivatorとrepressorとしての機能に関する天然変性領域の解析2012

    • Author(s)
      諸橋伸行、大島えりか、大島綾子、牧野紋子、市川雄一、胡桃坂仁志、福地佐斗志、西村善文、清水光弘
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヘテロクロマチン構造形成因子Swi6クロモドメインとヒストンH3K9me3ペプチドの複合体の構造解析2012

    • Author(s)
      中村紗里、下條秀朗、中山潤一、西村善文
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 質量分析を用いたヌクレオソームのアセチル化に伴う構造変化の解析2012

    • Author(s)
      畔上奈々子、七種和美、神蔵祐典、戸所泰人、立和名博昭、長土居有隆、胡桃坂仁、西村善文、明石知子
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] ヒストンシャペロン hNap1のC末酸性ドメインとヒストンH2A/H2Bの相互作用2012

    • Author(s)
      森脇義仁、奥脇暢、永田恭介、戸所泰人、佐藤昌彦、長土居有隆、西村善文
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      マリンメッセ福岡(福岡県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] NMRによるエピゲノム関連天然変性タンパク質の構造解析と結合化合物スクリーニング2012

    • Author(s)
      西村善文
    • Organizer
      日本薬学会第132年会一般シンポジウム「創薬を目指す核磁気共鳴(NME):現況と展望」"NMR aim at Drug Discovery : Present and Future"
    • Place of Presentation
      北海道大学札幌キャンパス(北海道)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural biology on Chromatin - related proteins2011

    • Author(s)
      Nishimura Y, Shimojo H, Kawaguchi A, Okuda M, Moriwaki Y, Iizumi K, Nagadoi A
    • Organizer
      The 4th Asia-Pacific NMR Symposium (The 4th APNMR Symposium) アジア-太平洋 NMR シンポジウム
    • Place of Presentation
      中国・Beijing Central Garden Hotel
    • Year and Date
      2011-10-19
    • Related Report
      2012 Final Research Report
  • [Presentation] Eukaryotic nuclear IUPs (真核生物の核内天然変性タンパク質)2011

    • Author(s)
      西村善文
    • Organizer
      2010 KRIBB Conference on Structural Bioinformatics(2nd Asia-Pacific symposium on Intrinsically Unfolded Proteins)
    • Place of Presentation
      韓国・大田(KRIBB)
    • Year and Date
      2011-01-15
    • Related Report
      2012 Final Research Report
  • [Presentation] Eaf3クロモドメインのヒストンH3K36me3に対するpH依存的な結合能の調節Mechanism of binding of Eaf3 Chromo domain to trimethylated lysine 36 of histone H3 in a pH-dependent way2011

    • Author(s)
      細野枝里菜、奥田昌彦、野口修平、西村善文、堀越正美
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] The effect of human telomeric repeat sequences on nucleosome positioning in yeast cells2011

    • Author(s)
      市川雄一、諸橋伸行、西村善文、胡桃坂仁志、清水光弘
    • Organizer
      第34向日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 出芽酵母Ume6による転写抑制に関与する天然変性領域の機能解析Functional analysis of intrinsically disordered regions for transcriptional repression by Ume6, an activator/repressor protein of early meiotic genes in S.cerevisiae2011

    • Author(s)
      大島えりか、諸橋伸行、大島綾子、福地佐斗志、西村善文、Aaron P.Mitchell、清水光弘
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Functional analysis of intrinsically disordered regions for transcriptional activation by Ume6, an activator/repressor protein of early meiotic genes in S.cerevisiae2011

    • Author(s)
      諸橋伸行、大島綾子、大島えりか、松本あずさ、福地佐斗志、西村善文、Aaron R.Mitchell、清水光弘
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Eaf3 chromodomain is a novel histone methyllysine binder depending on pH2011

    • Author(s)
      奥田昌彦、細野枝里菜、野口修平、堀越正美、西村善文
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] NMR studies on Chromatin-related Proteins2011

    • Author(s)
      西村善文
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Solid-state NMR analysis of H+-ATP synthase subunit c-ring from Thermophilic Bacillus2011

    • Author(s)
      Su-Jin Kang, Suyeon Bak, Yasuto Todokoro, Ikuko Yumen, Iku Iwasaki, Toshiharu Suzuki, Toshimichi Fujiwara, Masasuke Yoshida, Hdeo Akutsu
    • Organizer
      ISNMR2011第50回NMR討論会記念国際シンポジウム
    • Place of Presentation
      大さん橋ホール(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] A telomeric repeat-binding factor TRF2 binds to a parallel G quadruplex structure via its Myb domain2011

    • Author(s)
      Yuuka Hirao, Shin Morita, Kazuki Oinishi, Hideaki Shimojo, Shingo Hanaoka, Hideyuki Okamura, Tadateru Nishikawa, Yoshifumi Nishimura
    • Organizer
      ISNMR2011第50回NMR討論会記念国際シンポジウム
    • Place of Presentation
      大さん橋ホール(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] NMR structure of the HP1-α chromodomain phosphorylated at N-terminal serine residues2011

    • Author(s)
      Ayumi Kawaguchi, Hideaki Shimojo, Kyoko Hamada, Jun-Ichi Nakayama, Yoshifumi Nishimura
    • Organizer
      ISNMR2011第50回NMR討論会記念国際シンポジウム
    • Place of Presentation
      大さん橋ホール(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] The interaction analysis of CENP-S/X and CENP-T/W by NMR2011

    • Author(s)
      Masahiro Takahashi, Aritaka Nagadoi, Tatsuya Nishino, Tatsuo Fukagawa, Yoshifumi Nishimura
    • Organizer
      ISNMR2011第50回NMR討論会記念国際シンポジウム
    • Place of Presentation
      大さん橋ホール(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] NMR study on the basic domain of telomeric protein TRF2 bound to Holliday junction2011

    • Author(s)
      Yoshinao Iwasawa, Hideaki Shimojo, Motoki Murai, Ryo Kanno, Yoshifumi Nishimura
    • Organizer
      ISNMR2011第50回NMR討論会記念国際シンポジウム
    • Place of Presentation
      大さん橋ホール(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] NMR studies on the histone H2A/H2B hetero dimer and histone chaper ones, NAP1 and NAP22011

    • Author(s)
      Yoshihito Moriwaki, Mitsuru Okuwaki, Kyosuke Nagata, Masahiko Sato, Aritaka Nagadoi, Yoshifumi Nishimura
    • Organizer
      ISNMR2011第50回NMR討論会記念国際シンポジウム
    • Place of Presentation
      大さん橋ホール(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural analysis for 85 kDa protein complex, general transcription factor TFIIE by NMR spectroscopy2011

    • Author(s)
      Masahiko Okuda, Yoshihito Moriwaki, Masayuki Kataoka, Aritaka Nagadoi, Aki Tanaka, Yoshiaki Ohkuma, Yoshifumi Nishimura
    • Organizer
      ISNME2011第50回NMR討論会記念国際シンポジウム
    • Place of Presentation
      大さん橋ホール(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] NMR studies on the Chp1 chromodomain2011

    • Author(s)
      Hideaki Shimojo, Mayumi Ishida, Jun-Ichi Nakayama, Yoshifumi Nishimura
    • Organizer
      ISNMR2011第50回NMR討論会記念国際シンポジウム
    • Place of Presentation
      大さん橋ホール(神奈川県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural biology on Chromatin-related proteins2011

    • Author(s)
      Yoshifumi Nishimura, Hideaki Shimojo, Ayumi Kawaguchi, Masahiko Okuda, Yoshihito Moriwaki, Katsuya Iizumi, Aritaka Nagadoi
    • Organizer
      The 4th Asia-Pacific NMR Symposium (The 4th APNMR Symposium)アジア・太平洋NMEシンポジウム
    • Place of Presentation
      Beijing Central Garden Hotel(中国北京)中国北京
    • Related Report
      2011 Annual Research Report
  • [Presentation] クロマチン関連タンパク質の構造生物学2011

    • Author(s)
      西村善文、森脇義仁、飯泉勝也、下條秀朗、奥田昌彦、長土居有隆
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2011 Annual Research Report
  • [Presentation] ヘテロクロマチン形成因子HP1αセリンリン酸化クロモドメインの構造解析2011

    • Author(s)
      川口あゆみ、下條秀朗、浜田京子、中山潤一、西村善文
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2011 Annual Research Report
  • [Presentation] イオンモビリティ質量分析法による生体超分子の構造解析(その1)DNAとDNA結合タンパク質のイオンモビリティ質量分析2011

    • Author(s)
      下條秀朗、廣瀬賢治、川瀬泰司、押方基二、西村善文
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2011 Annual Research Report
  • [Presentation] イオンモビリティ質量分析法による生体超分子の構造解析(その2)基本転写因子TFIIEαイオンモビリティ質量分析2011

    • Author(s)
      奥田昌彦、廣瀬賢治、川瀬泰司、押方基二、西村善文
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      国立京都国際会館(京都府)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 全原子シミュレーションによる天然変性蛋白質の自由エネルギー地形2011

    • Author(s)
      肥後順一、西村善文、中村春木
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学(兵庫県)
    • Related Report
      2011 Annual Research Report
  • [Presentation] イオンモビリティ質量分析とX線小角散乱による基本転写因子TFIIEの構造解析2011

    • Author(s)
      七種和美、小田隆、奥田昌彦、池口満徳、佐藤衛、西村善文、明石知子
    • Organizer
      第59回質量分析総合討論会
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪府)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural biology on chromatin-related proteins2011

    • Author(s)
      Yoshifumi Nishimura
    • Organizer
      Symposium on the Structure and Folding of Disease Related Proteins
    • Place of Presentation
      Structural Research Center for Innovative Drug Development(ソウル国立大学)(ソウル韓国)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 天然変成蛋白質NRSFとそのパートナー蛋白質mSin3の結合/折れ畳みの詳細な自由エネルギー地形2011

    • Author(s)
      肥後順一、西村善文、中村春木
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪府)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Characterization of histone multimers by ESI-MS2011

    • Author(s)
      Singo Shimoyama, Yuki Asano, Kyohei Takahashi, Hiroaki Tachiwana, Aritaka Nagadoi, Hitoshi Kurumizaka, Yoshifumi Nishimura, Satoko Akashi
    • Organizer
      59th ASMS Conference on Mass Spectrometry and Allied Topics
    • Place of Presentation
      コロラドコンベンションセンターデンバー・コロラド州(アメリカ)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Eukaryotic nuclear IUPs(真核生物の核内天然変性タンパク質)2011

    • Author(s)
      西村善文
    • Organizer
      2010 KRIBB Conference on Structural Bioinformatics (2nd Asia-Pacific symposium on Intrinsically Unfolded Proteins)
    • Place of Presentation
      大田(KRIBB)(韓国)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Polymorphism of chromodomains2010

    • Author(s)
      西村善文
    • Organizer
      構造エピゲノム研究会第2回ワークショップ
    • Place of Presentation
      理化学研究所横浜研究所交流棟ホール(神奈川県)
    • Year and Date
      2010-11-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMR studies on gene regulation-related proteins: intrinsic disordered states and drug screening2010

    • Author(s)
      西村 善文
    • Organizer
      Korean Magnetic Resonance Society Meeting(KMRS:韓国磁気共鳴学会)
    • Place of Presentation
      韓国・釜山
    • Year and Date
      2010-06-23
    • Related Report
      2012 Final Research Report
  • [Presentation] 転写制御因子、ヒストン修飾因子の構造生物学2010

    • Author(s)
      長土居有隆, 奥田昌彦, 明石知子, 西村善文
    • Organizer
      ターゲットタンパク研究プログラム研究交流会
    • Place of Presentation
      東京国際フォーラム(東京都)
    • Year and Date
      2010-03-05
    • Related Report
      2009 Annual Research Report
  • [Presentation] 基本転写因子TFIIEとそれと相互作用するタンパク質群の機能解析2010

    • Author(s)
      田中亜紀, 水田翔子, 奥田昌彦, 西村善文, 大熊芳明
    • Organizer
      ターゲットタンパク研究プログラム研究交流会
    • Place of Presentation
      東京国際フォーラム(東京都)
    • Year and Date
      2010-03-05
    • Related Report
      2009 Annual Research Report
  • [Presentation] 転写関連因子の天然変性状態2010

    • Author(s)
      西村善文
    • Organizer
      ターゲットタンパク研究プログラム研究交流会
    • Place of Presentation
      東京大学山上会館(東京都)
    • Year and Date
      2010-03-04
    • Related Report
      2009 Annual Research Report
  • [Presentation] 質量分析を用いたヒストンH2A-H2Bのシトルリン化の解析2010

    • Author(s)
      浅野裕輝、下山真吾、長土居有隆、立和名博昭、山田道之、佐藤衛、胡桃坂仁志、西村善文、明石知子
    • Organizer
      日本分子生物学会年会・日本生化学会大会合同大会BMB2010
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 基本転写因子TFIIE-TFIIHの機能解析2010

    • Author(s)
      山田華那、田中亜紀、水田翔子、高澤学、吉國達也、奥田昌彦、西村善文、大熊芳明
    • Organizer
      日本分子生物学会年会・日本生化学会大会合同大会BMB2010
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Related Report
      2010 Annual Research Report
  • [Presentation] ヒストンH3-H4と相互作用する分裂酵母クロマチン関連因子Mlo2の構造解析2010

    • Author(s)
      飯泉勝也、長土居有隆、伊縫美妃、田上英明、西村善文
    • Organizer
      日本分子生物学会年会・日本生化学会大会合同大会BMB2010
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Related Report
      2010 Annual Research Report
  • [Presentation] テロメアDNA結合タンパク質hTRF2の塩基性ドメインとテロメアDNAとの相互作用解析2010

    • Author(s)
      村井元気、下條秀朗、菅野良、長土居有隆、西村善文
    • Organizer
      日本分子生物学会年会・日本生化学会大会合同大会BMB2010
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMRによるヒストンヌクレオソームコアの立体構造解析2010

    • Author(s)
      森脇義仁、佐藤昌彦、長土居有隆、立和名博昭、胡桃坂仁志、西村善文
    • Organizer
      日本分子生物学会年会・日本生化学会大会合同大会BMB2010
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Related Report
      2010 Annual Research Report
  • [Presentation] クロマチン関連因子の構造生物学2010

    • Author(s)
      西村善文
    • Organizer
      日本分子生物学会年会・日本生化学会大会合同大会BMB2010
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Structural study of the specific interaction of hTRF1 and hTRF2 with G-quadruplex structures2010

    • Author(s)
      Shin Morita, Yuuka Hirao, Yoshifumi Nishimura
    • Organizer
      ISNAC2010第37回国際核酸化学シンポジウム
    • Place of Presentation
      はまぎんホール・ヴィアマーレ(神奈川県)
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMR studies of the basic domain of a telomeric DNA-binding protein, TRF22010

    • Author(s)
      Hideaki Shimojo, Motoki Murai, Ryo Kanno, Yoshifumi Nishimura
    • Organizer
      ISNAC2010第37回国際核酸化学シンポジウム
    • Place of Presentation
      はまぎんホール・ヴィアマーレ(神奈川県)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Mass spectrometry of DNA G-quadruplex bound to a human telomeric protein, hTRF22010

    • Author(s)
      Naohiro Kodama, Yuuka Hirao, Noriyuki Iwasaki, Yoshiyuki Itoh, Yoshifumi Nishimura, Satoko Akashi
    • Organizer
      ISNAC2010第37回国際核酸化学シンポジウム
    • Place of Presentation
      はまぎんホール・ヴィアマーレ(神奈川県)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Disordered proteins and NMR screening of drug candidates2010

    • Author(s)
      西村善文
    • Organizer
      The 2nd International Symposium on Drug Discovery and Design by NMR
    • Place of Presentation
      理化学研究所横浜研究所交流棟ホール(神奈川県)
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMR studies on the Six domain of Six32010

    • Author(s)
      H.Shimojo, H.Okamura, A.Nagadoi, K.Ikeda, K.Kawakami, Y.Nishimura
    • Organizer
      XXIVth International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      ケアンズコンベンションセンター(オーストラリア)
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMR structure of general transcription factor TF II E2010

    • Author(s)
      Y.Nishimura, M.Okuda
    • Organizer
      XXIVth International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      ケアンズコンベンションセンター(オーストラリア)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Intrinsically disordered proteins and NMR screening of drug candidates2010

    • Author(s)
      西村善文
    • Organizer
      Symposium on the Structure and Folding of Disease Related Proteins
    • Place of Presentation
      ソウル(韓国)
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMR studies on gene regulation-related proteins : intrinsic disordered states and drug screening2010

    • Author(s)
      西村善文
    • Organizer
      Korean Magnetic Resonance Society Meeting(KMRS:韓国磁気共鳴学会)
    • Place of Presentation
      釜山(韓国)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 翻訳後修飾にともなうタンパク質の構造変化-H2A/H2Bのシトルリン化-2010

    • Author(s)
      下山真吾、長土居有隆、立和名博昭、浅野裕輝、山田道之、佐藤衛、胡桃坂仁志、西村善文、明石知子
    • Organizer
      第58回質量分析総合討論会・第1回アジア・オセアニア質量分析会議
    • Place of Presentation
      つくば国際会議場エポカル(茨城県)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 天然変性タンパク質の認識機構の多様性と創薬への道2010

    • Author(s)
      西村善文、平尾優佳、長土居有隆
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌)
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMR Experiments on Drug Candidates for the Sin3 Corepressor Bound to the Neural Repressor NRSF/REST Related to Meduloblastoma2010

    • Author(s)
      西村善文
    • Organizer
      PepCon2010
    • Place of Presentation
      北京(中国)
    • Related Report
      2009 Annual Research Report
  • [Presentation] 転写制御因子、ピストン修飾因子の構造生物学2010

    • Author(s)
      長土居有隆, 奥田昌彦, 明石知子, 西村善文
    • Organizer
      ターゲットタンパク研究プログラム基本生命WG班会議
    • Place of Presentation
      新神戸(兵庫県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] 基本転写因子TFIIEとそれと相互作用するタンパク質群の機能解析2010

    • Author(s)
      田中亜紀, 水田翔子, 奥田昌彦, 西村善文, 大熊芳明
    • Organizer
      ターゲットタンパク研究プログラム基本生命WG班会議
    • Place of Presentation
      新神戸(兵庫県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] クロマチン上での基本転写因子、転写制御因子、ヒストン修飾因子の構造生物学2010

    • Author(s)
      西村善文
    • Organizer
      ターゲットタンパク研究プログラム基本生命WG班会議
    • Place of Presentation
      新神戸(兵庫県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] NMR Studies on Nuclear Proteins2009

    • Author(s)
      西村善文
    • Organizer
      よこはまNMR構造生物学研究会 第39回ワークショップ「RNAの構造生物学」
    • Place of Presentation
      理化学研究所横浜研究所交流棟ホール(神奈川県)
    • Year and Date
      2009-11-12
    • Related Report
      2009 Annual Research Report
  • [Presentation] Intrinsically Disordered Transcription-related Proteins2009

    • Author(s)
      Okuda M, Nagadoi A, Komatsu M, Nishimura Y
    • Organizer
      第3回ア ジア - 太平洋 NMR シン ポジ ウム(APNMR)
    • Place of Presentation
      韓国・ Ramada Plaza Jeju Hotel
    • Year and Date
      2009-10-28
    • Related Report
      2012 Final Research Report
  • [Presentation] 天然変性タンパク質と結合化合物のスクリーニング2009

    • Author(s)
      西村義文
    • Organizer
      サントリー生有研フォーラム
    • Place of Presentation
      大阪府
    • Year and Date
      2009-08-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] ヒストンアセチル化酵素Esa1のRNA認識2009

    • Author(s)
      西村善文
    • Organizer
      よこはまNMR構造生物学研究会 第37回ワークショップ「RNAの構造生物学」
    • Place of Presentation
      理化学研究所横浜研究所交流棟ホール(神奈川県)
    • Year and Date
      2009-07-24
    • Related Report
      2009 Annual Research Report
  • [Presentation] 遺伝子のスイッチに働くタンパク質2009

    • Author(s)
      西村善文
    • Organizer
      サタデーサイエンス~高校生のための「生命科学シンポジウム」
    • Place of Presentation
      横浜サイエンスフロンティア高校(神奈川県)
    • Year and Date
      2009-05-16
    • Related Report
      2009 Annual Research Report
  • [Presentation] 天然変性タンパク質による転写調節機構(ワークショップテーマ)2009

    • Author(s)
      西村善文
    • Organizer
      第32回日本分子生物学会年会(MBSJ)
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] NMRによるヒストンヌクレオソームコアの立体構造解析2009

    • Author(s)
      森脇義仁, 佐藤昌彦, 長土居有隆, 西村善文
    • Organizer
      平成21年度 日本分光学会年次講演会
    • Place of Presentation
      東京工業大学百年記念館(東京都)
    • Related Report
      2009 Annual Research Report
  • [Presentation] ヒストンアセチルトランスフェラーゼ Esa1のクロモドメインの立体構造解析2009

    • Author(s)
      下條秀朗, 佐野徳彦, 森脇義仁, 奥田昌彦, 堀越正美, 西村善文
    • Organizer
      平成21年度 日本分光学会年次講演会
    • Place of Presentation
      東京工業大学百年記念館(東京都)
    • Related Report
      2009 Annual Research Report
  • [Presentation] ヒト基本転写因子TFIIE alhpa 酸性ドメインの動的構造解析2009

    • Author(s)
      小松正史, 奥田昌彦, 長土居有隆, 菅瀬謙治, 西村善文
    • Organizer
      第48回NMR討論会
    • Place of Presentation
      九州大学医学部百年講堂(福岡県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] NMRによるヒストンヌクレオソームコアの立体構造解析2009

    • Author(s)
      森脇義仁, 佐藤昌彦, 長土居有隆, 西村善文
    • Organizer
      第48回NMR討論会
    • Place of Presentation
      九州大学医学部百年講堂(福岡県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] ヒストンアセチルトランスフェラーゼ Esa1のクロモドメインの立体構造解析2009

    • Author(s)
      下條秀朗, 佐野徳彦, 森脇義仁, 奥田昌彦, 堀越正美, 西村善文
    • Organizer
      第48回NMR討論会
    • Place of Presentation
      九州大学医学部百年講堂(福岡県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] Intrinsically Disordered Transcription-related Proteins2009

    • Author(s)
      奥田昌彦, 長土居有隆, 小松正史, 西村善文
    • Organizer
      第3回アジア-太平洋NMRシンポジウム(APNMR)
    • Place of Presentation
      Ramada Plaza Jeju Hotel(韓国)
    • Related Report
      2009 Annual Research Report
  • [Presentation] シトルリン化によるヒストンH2A/HBの構造変化2009

    • Author(s)
      下山真吾, 長土居有隆, 立和名博昭, 山田道之, 佐藤衛, 胡桃坂仁志, 西村善文, 明石知子
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] 天然変性転写関連タンパク質2009

    • Author(s)
      西村善文
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] NMRによるヒストンヌクレオソームコアの立体構造解析2009

    • Author(s)
      森脇義仁, 佐藤昌彦, 長土居有隆, 西村善文
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] ヒストンアセチルトランスフェラーゼ Esa1のクロモドメインの立体構造解析2009

    • Author(s)
      下條秀朗, 佐野徳彦, 森脇義仁, 奥田昌彦, 堀越正美, 西村善文
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] クロマチン上での基本転写因子、転写制御因子、ヒストン修飾因子の構造生物学2009

    • Author(s)
      西村善文
    • Organizer
      ターゲットタンパク全体交流会
    • Place of Presentation
      ウエスティン都ホテル京都(京都府)
    • Related Report
      2009 Annual Research Report
  • [Presentation] 核内天然変性タンパク質の分子認識機構2009

    • Author(s)
      西村善文
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      熊本全日空ホテルニュースカイ(熊本県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] 生命のメカニズムに迫るESI-MS -X線結晶構造解析との collaboration で見えてくる生体超分子の構造-2009

    • Author(s)
      明石知子
    • Organizer
      第57回質量分析総合討論会
    • Place of Presentation
      大阪国際交流センター(大阪府)
    • Related Report
      2009 Annual Research Report
  • [Presentation] 核内タンパク質の構造的柔軟性と機能発現2009

    • Author(s)
      西村善文
    • Organizer
      第36回構造生物応用研究会
    • Place of Presentation
      御殿場高原ホテル(静岡県)
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structural biology on chromatin - related proteins,Symposium on the Structure and Folding of Disease Related Proteins2007

    • Author(s)
      Nishimura Y
    • Organizer
      Structural Research Center for Innovative Drug Development
    • Place of Presentation
      韓国・ソウル国立大学
    • Year and Date
      2007-07-10
    • Related Report
      2012 Final Research Report
  • [Presentation] Structural analysis of Chip1 chromodomain required for heterochromatin assembly.

    • Author(s)
      Yoshifumi Nishimura.
    • Organizer
      Symposium on the Structure and Folding of Disease Related Proteins.
    • Place of Presentation
      Structural Research Center for Innovative Drug Development(ソウル韓国)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] NMR Studies on Chromatin-Related Proteins.

    • Author(s)
      Yoshifumi Nishimura.
    • Organizer
      International Workshop on Pharmaceutical NMR.
    • Place of Presentation
      大阪大学(大阪府)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 高分子としてのタンパク質構造解析:様々の手法のシンクロナイゼーション -質量分析の立場から-

    • Author(s)
      明石知子
    • Organizer
      第6回ソフトマター中性子散乱研究会
    • Place of Presentation
      東京
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] NMRによるエピゲノム関連タンパク質の機能解析

    • Author(s)
      西村善文
    • Organizer
      よこはまNMR構造生物学研究会第46回ワークショップ
    • Place of Presentation
      理化学研究所交流棟ホール(神奈川県)
    • Related Report
      2012 Annual Research Report
  • [Presentation] NMR studies on gene regulation-related proteins : intrinsic disordered states and drug screening

    • Author(s)
      西村善文
    • Organizer
      Korean Magnetic Resonance Society Meeting開会講演
    • Related Report
      2010 Self-evaluation Report
  • [Book] “現代質量分析学”、高山光男、早川滋雄、瀧浪欣彦、和田芳直編 第26章 生体超分子2013

    • Author(s)
      明石知子
    • Publisher
      化学同人
    • Related Report
      2012 Annual Research Report
  • [Book] “試料分析講座 タンパク質分析”、日本分析化学会編 5.3 タンパク質複合体のネイティブ質量分析2012

    • Author(s)
      明石知子
    • Publisher
      丸善出版
    • Related Report
      2012 Annual Research Report
  • [Remarks] よこはま NMR 構造生物学研究会

    • URL

      http://www.tsurumi.yokohama-cu.ac.jp/ynmr/

    • Related Report
      2012 Final Research Report
  • [Remarks] 構造エピゲノム研究会

    • URL

      http://www.tsurumi.yokohama-cu.ac.jp/segc/

    • Related Report
      2012 Final Research Report
  • [Remarks] よこはまNMR構造生物学研究会

    • URL

      http://www.tsurumi.yokohama-cu.ac.jp/ynmr/

    • Related Report
      2012 Annual Research Report
  • [Remarks] よこはまバイオマス研究会

    • URL

      http://www.tsurumi.yokohama-cu.ac.jp/ybiomass/

    • Related Report
      2012 Annual Research Report
  • [Remarks] 構造エピゲノム研究会

    • URL

      http://www.tsurumi.yokohama-cu.ac.jp/segc/

    • Related Report
      2012 Annual Research Report
  • [Remarks] ホームページ

    • URL

      http://www.tsurumi.yokohama-cu.ac.jp/stbiol/index.html

    • Related Report
      2010 Self-evaluation Report
  • [Remarks]

    • URL

      http://www.tsurumi.yokohama-cu.ac.jp/ynmr/

    • Related Report
      2010 Self-evaluation Report
  • [Remarks]

    • URL

      http://www.tsurumi.yokohama-cu.ac.jp/segc/

    • Related Report
      2010 Self-evaluation Report
  • [Patent(Industrial Property Rights)] 線維筋痛症の予防または治療薬2012

    • Inventor(s)
      西村善文、植田弘師
    • Industrial Property Rights Holder
      公立大学法人横浜市立大学、公国立大学法人長崎大学、PRISM BioLab株式会社
    • Filing Date
      2012-12-06
    • Related Report
      2012 Final Research Report
  • [Patent(Industrial Property Rights)] 神経選択的転写抑制因子 NRSF に特異的に結合する mSin3B に結合する化合物の利用2011

    • Inventor(s)
      西村善文、長土居有隆、平尾優佳、五嶋良郎、山下直也、植田弘師、宮田直樹、鈴木孝禎、平石龍大
    • Industrial Property Rights Holder
      公立大学法人横浜市立大学、公立大学法人名古屋市立大学、国立大学法人長崎大学
    • Filing Date
      2011-02-09
    • Related Report
      2012 Final Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 神経選択的転写抑制因子NRSFに特異的に結合するmSin3Bに結合する化合物の利用2011

    • Inventor(s)
      西村善文, 長土居有隆, 平尾優佳, 五嶋良郎, 山下直也, 植田弘師, 宮田直樹, 鈴木孝禎, 平石龍大
    • Industrial Property Rights Holder
      公立大学法人横浜市立大学, 公立大学法人名古屋市立大学, 国立大学法人長崎大学
    • Filing Date
      2011-02-09
    • Related Report
      2010 Annual Research Report
    • Overseas

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Published: 2009-04-01   Modified: 2019-07-29  

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