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Highly quantitative gene analysis based on affinity capillary electrophoresis using DNA conjugates

Research Project

Project/Area Number 20245020
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Analytical chemistry
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

MAEDA Mizuo  独立行政法人理化学研究所, 前田バイオ工学研究室, 主任研究員 (10165657)

Co-Investigator(Kenkyū-buntansha) TAKARADA Tohru  独立行政法人理化学研究所, 前田バイオ工学研究室, 専任研究員 (30336010)
Project Period (FY) 2008 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥47,710,000 (Direct Cost: ¥36,700,000、Indirect Cost: ¥11,010,000)
Fiscal Year 2011: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2010: ¥9,880,000 (Direct Cost: ¥7,600,000、Indirect Cost: ¥2,280,000)
Fiscal Year 2009: ¥15,080,000 (Direct Cost: ¥11,600,000、Indirect Cost: ¥3,480,000)
Fiscal Year 2008: ¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Keywordsバイオ関連機器 / 核酸 / 高分子合成 / アフィニティー分離 / 電気泳動
Research Abstract

To quantitatively detect point gene mutation, we have developed an affinity capillary electrophoresis using a block copolymer probe composed of a synthetic polymer and a single-stranded DNA. During electrophoresis of a mixture of the target and nontarget DNA, the affinity probe binds selectively to the target DNA and thus decreases the electrophoretic mobility by exerting a large amount of hydrodynamic friction. Moreover, this study demonstrated that(1) the peak resolution was improved in the presence of electroosmotic flow and(2) a block copolymer probe containing peptide nucleic acid sequence-selectively bound to secondary-structured target DNA.

Report

(6 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report   Self-evaluation Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (35 results)

All 2011 2010 2009 2008 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (24 results) Remarks (6 results)

  • [Journal Article] RAFT-generated polyacrylamide-DNA block copolymers for single-nucleotide polymorphism genotyping by affinity capillary electrophoresis2009

    • Author(s)
      Naoki Kanayama, Hideaki Shibata, Ayumi Kimura, Daisuke Miyamoto, Tohru Takarada, and Mizuo Maeda
    • Journal Title

      Biomacromolecules

      Volume: 10(4) Pages: 805-813

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] RAFT-generated polyacrylamide-DNA block copolymers for single-nucleotide polymorphism genotyping by affinity capillary electrophoresis2009

    • Author(s)
      Naoki Kanayama, Hideaki Shibata, Ayumi Kimura, Daisuke Miyamoto, Tohru Takarada, Mizuo Maeda
    • Journal Title

      Biomacromolecules 10(4)

      Pages: 805-813

    • Related Report
      2010 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Estimation of binding constants of PNA and secondary-structured DNA by affinity capillary electrophoresis

    • Author(s)
      Lal Mohan Kundu, Harumi Tsukada, Yukiharu Matsuoka, Naoki Kanayama, Tohru Takarada, and Mizuo Maeda
    • Journal Title

      Anal. Chem.

      Volume: (in press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Quantitative SNP genotyping by affinity capillary electrophoresis using PEG-oligodeoxyribonucleotide block copolymers with electroosmotic flow

    • Author(s)
      Harumi Tsukada, Takashi Watanabe, Naoki Kanayama, Tohru Takarada, and Mizuo Maeda
    • Journal Title

      Electrophoresis

      Volume: (in press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] RAFT-generated polyacrylamide-DNA block copolymers for single-nucleotide polymorphism genotyping by affinity capillary electrophoresis

    • Author(s)
      N. Kanayama
    • Journal Title

      Biomacromolecules

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] ポリマー修飾核酸を用いたキャピラリーゾーン電気泳動による遺伝子変異分析2011

    • Author(s)
      塚田暖美、渡邉誉、松岡幸治、金山直樹、宝田徹、前田瑞夫
    • Organizer
      第60回高分子討論会
    • Place of Presentation
      岡山大学(岡山市)
    • Year and Date
      2011-09-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] PEG修飾DNAをアフィニティープローブに用いたキャピラリーゾーン電気泳動によるSNP定量検出2011

    • Author(s)
      塚田暖美、渡邉誉、松岡幸治、金山直樹、宝田徹、前田瑞夫
    • Organizer
      日本分析化学会第60年会
    • Place of Presentation
      名古屋大学(名古屋市)
    • Year and Date
      2011-09-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] Affinity capillary electrophoresis for quantitative gene diagnostics2011

    • Author(s)
      宝田徹、前田瑞夫
    • Organizer
      IUPAC International Congress on Analytical Sciences
    • Place of Presentation
      京都府京都市
    • Year and Date
      2011-05-26
    • Related Report
      2011 Final Research Report
  • [Presentation] Affinity Capillary Electrophoresis for Quantitative Gene Diagnostics2011

    • Author(s)
      宝田徹、前田瑞夫
    • Organizer
      IUPAC International Congress on Analytical Sciences 2011
    • Place of Presentation
      京都国際会議場(京都市)
    • Year and Date
      2011-05-26
    • Related Report
      2011 Annual Research Report
  • [Presentation] DNA Point Mutation Assay by Affinity Capillary Zone Electrophoresis Using Poly (ethylene glycol)-DNA Block Copolymers2011

    • Author(s)
      塚田暖美、渡邉誉、松岡幸治、宝田徹、前田瑞夫
    • Organizer
      IUPAC International Congress on Analytical Sciences 2011
    • Place of Presentation
      京都国際会議場(京都市)
    • Year and Date
      2011-05-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] DNA conjugate polymers for medical diagnosis2011

    • Author(s)
      前田瑞夫
    • Organizer
      International Conference on Biomaterials Science 2011
    • Place of Presentation
      茨城県つくば市
    • Year and Date
      2011-03-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNA conjugate polymers for gene mutation assay2011

    • Author(s)
      金山直樹、宝田徹、前田瑞夫
    • Organizer
      15th International Symposium on Recent Advances in Drug Delivery Systems
    • Place of Presentation
      USA, Salt Lake City
    • Year and Date
      2011-02-14
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNA-conjugated polymers for quantitative SNP analysis2011

    • Author(s)
      宝田徹、前田瑞夫
    • Organizer
      11^<th> International Symposium on Biomimetic Materials Processing
    • Place of Presentation
      愛知県名古屋市
    • Year and Date
      2011-01-27
    • Related Report
      2011 Final Research Report 2010 Self-evaluation Report
  • [Presentation] DNA-conjugated polymers for quantitative SNP analysis2011

    • Author(s)
      宝田徹、前田瑞夫
    • Organizer
      11th International Symposium on Biomimetic Materials Processing
    • Place of Presentation
      愛知県名古屋市
    • Year and Date
      2011-01-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] ポリマー修飾核酸をアフィニティープローブに用いたキャピラリーゾーン電気泳動による一塩基多型分析2010

    • Author(s)
      塚田暖美、渡邉誉、松岡幸治、宝田徹、前田瑞夫
    • Organizer
      東京コンファレンス2010
    • Place of Presentation
      千葉県千葉市
    • Year and Date
      2010-09-02
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNA block copolymer probes for affinity electrophoresis in gene diagnosis2010

    • Author(s)
      宝田徹
    • Organizer
      2010 Japan-Taiwan Bilateral Polymer Symposium
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2010-07-01
    • Related Report
      2011 Final Research Report 2010 Annual Research Report 2010 Self-evaluation Report
  • [Presentation] PNA-PEGブロック共重合体を用いたアフィニティーキャピラリー電気泳動による遺伝子変異分析2010

    • Author(s)
      松岡幸治、塚田暖美、Lal Mohan Kundu、金山直樹、宝田徹、前田瑞夫
    • Organizer
      第59回高分子学会年次大会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2010-05-28
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNA-PEGブロック共重合体を用いたアフィニティーキャピラリーゾーン電気泳動による遺伝子変異分析2010

    • Author(s)
      渡邉誉、松岡幸治、宝田徹、前田瑞夫
    • Organizer
      第59回高分子学会年次大会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2010-05-28
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNA-PEGブロック共重合体を用いたアフィニティーキャピラリー電気泳動による一塩基多型アレル頻度分析2010

    • Author(s)
      宝田徹、木村鮎美、松岡幸治、金山直樹、仲下英雄、前田瑞夫
    • Organizer
      第59回高分子学会年次大会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2010-05-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNA-conjugated polymers for biomedical analysis2009

    • Author(s)
      宝田徹
    • Organizer
      Shanghai Jiao Tong University-RIKEN Symposium on Nano Materials and Technology
    • Place of Presentation
      中国、上海市
    • Year and Date
      2009-10-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] ポリマー修飾ペプチド核酸をアフィニティープローブに用いたキャピラリー電気泳動によるSNPアレル頻度評価法2009

    • Author(s)
      松岡, 宝田, Kundu, 金山, 前田
    • Organizer
      東京コンファレンス2009
    • Place of Presentation
      (幕張メッセ)千葉県千葉市
    • Year and Date
      2009-09-04
    • Related Report
      2009 Annual Research Report
  • [Presentation] DNA複合高分子を活用したバイオ分析2009

    • Author(s)
      宝田徹
    • Organizer
      24^<th> Summer University in Hokkaido
    • Place of Presentation
      (洞爺サンパレス)北海道有珠郡
    • Year and Date
      2009-08-28
    • Related Report
      2009 Annual Research Report
  • [Presentation] DNA conjugate polymers and nanoparticles for rapid and reliable gene sensing2009

    • Author(s)
      前田瑞夫
    • Organizer
      The 4^<th> Asian and Pacific Rim Symposium on Biophotonics
    • Place of Presentation
      韓国済州島
    • Year and Date
      2009-05-27
    • Related Report
      2011 Final Research Report 2010 Self-evaluation Report
  • [Presentation] DNA conjugate polymers and nanoparticles for rapid and reliable gene sensing2009

    • Author(s)
      前田瑞夫
    • Organizer
      The 4th Asian and Pacific Rim Symposium on Biophotonics(APBP 2009)
    • Place of Presentation
      韓国、済州島
    • Year and Date
      2009-05-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] DNAナノ材料の開発と精密バイオセンシングへの展開2009

    • Author(s)
      前田瑞夫
    • Organizer
      日本化学会第89春季年会
    • Place of Presentation
      千葉県船橋市
    • Year and Date
      2009-03-27
    • Related Report
      2011 Final Research Report 2010 Self-evaluation Report
  • [Presentation] 環境センシングのためのナノバイオマテリアル2009

    • Author(s)
      前田瑞夫
    • Organizer
      第9回GSCシンポジウム
    • Place of Presentation
      東京都
    • Year and Date
      2009-03-09
    • Related Report
      2010 Self-evaluation Report
  • [Presentation] DNA工学に基づく新しい診断原理・技術の提案2008

    • Author(s)
      前田瑞夫
    • Organizer
      第26回医用高分子研究会講座
    • Place of Presentation
      産業技術総合研究所臨海副都心センター別館
    • Year and Date
      2008-11-10
    • Related Report
      2008 Annual Research Report
  • [Presentation] プローブDNAを片末端に有するノニオン性ポリマーを用いた一塩基変異体混合物の電気泳動分離2008

    • Author(s)
      金山直樹
    • Organizer
      第57回高分子学会年次大会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2008-05-30
    • Related Report
      2008 Annual Research Report
  • [Presentation] DNA複合高分子を用いたアフィニティーキャピラリー電気泳動による遺伝子変異の分離分析2008

    • Author(s)
      宝田徹
    • Organizer
      第69回分析化学討論会
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2008-05-16
    • Related Report
      2008 Annual Research Report
  • [Remarks]

    • URL

      http://www.riken.jp/lab-www/bioengineering/

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.riken.jp/lab-www/bioengineering/

    • Related Report
      2011 Annual Research Report
  • [Remarks] ホームページ

    • URL

      http://www.riken.jp/lab-www/bioengineering/

    • Related Report
      2010 Self-evaluation Report
  • [Remarks]

    • URL

      http://www.riken.jp/lab-www/bioengineering/

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.riken.jp/lab-www/bioengineering/

    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • URL

      http://www.riken.go.jp/lab-www/bioengineering/index.htm

    • Related Report
      2008 Annual Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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