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STRUCTURAL BIOLOGY ON MATURATION PROCESS OF METALLOPROTEINS

Research Project

Project/Area Number 20247009
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

MIKI Kunio  京都大学, 大学院・理学研究科, 教授 (10116105)

Co-Investigator(Renkei-kenkyūsha) ATOMI Haruyuki  京都大学, 大学院・工学研究科, 教授 (90243047)
Research Collaborator WATANABE Satoshi  京都大学, 大学院・理学研究科, 特定研究員 (50432357)
Project Period (FY) 2008 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥26,130,000 (Direct Cost: ¥20,100,000、Indirect Cost: ¥6,030,000)
Fiscal Year 2010: ¥17,420,000 (Direct Cost: ¥13,400,000、Indirect Cost: ¥4,020,000)
Fiscal Year 2009: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
KeywordsX線結晶解析 / タンパク質の構造機能解析 / 金属取り込み / ヒドロゲナーゼ / hypタンパク質 / 複合体構造 / Hypタンパク質
Research Abstract

Six Hyp proteins(HypA, B, C, D, E, and F) are primarily involved in the maturation process of[NiFe] hydrogenases which catalyze reversible hydrogen production and consumption. These proteins incorporate a complex Ni/Fe cluster into a protein subunit of[NiFe] hydrogenases. On the basis of our success in the first structure determination of HypC, HypD, and HypE, we have carried out here structure an alyses of HypA, HypB, and HypF and of complexes between HypC, HypD, and HypE to obtain mechanistic insights into the[NiFe] hydrogenase maturation.

Report

(4 results)
  • 2011 Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (40 results)

All 2012 2011 2010 2009 2008

All Journal Article (10 results) (of which Peer Reviewed: 4 results) Presentation (28 results) Book (2 results)

  • [Journal Article] Characterization and in vitro interaction study of a[NiFe] hydrogenase large subunit from the hyper ther mophilic archaeon Thermococcus kodakarensis KOD12012

    • Author(s)
      Sasaki, S. Watanabe, T. Kanai, H. Atomi, T. Imanaka, and K. Miki
    • Journal Title

      Biochem. Biophys. Res. Commun

      Volume: 417 Pages: 192-196

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterization and in vitro interaction study of a [NiFe] hydrogenase large subunit from the hyperthermophilic archaeon Thermococcus kodakarensis KOD12012

    • Author(s)
      D.Sasaki, S.Watanabe, T.Kanai, H.Atomi, T.Imanaka, K.Miki
    • Journal Title

      Biochem.Biophys.Res.Commun.

      Volume: 417 Pages: 192-196

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal Structure of HypA, a Nickel Binding Metallochaper-one for[NiFe] Hydrogenase Maturation2009

    • Author(s)
      S. Watanabe, T. Arai, R. Matsumi, H. Atomi, T. Imanaka, and K. Miki
    • Journal Title

      J. Mol. Biol

      Volume: 394 Pages: 448-459

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural Study of[NiFe] Hydrogenase Maturation Proteins, HypC, HypD, and HypE from Thermococcus kodakaraensis KOD12009

    • Author(s)
      S. Watanabe and K. Miki
    • Journal Title

      Photon Factory Activity Report 2007

      Volume: 25(Part A) Pages: 44-45

    • Related Report
      2011 Final Research Report
  • [Journal Article] Crystal Structure of HypA, a Nickel Binding Metallochaperone for [NiFe] Hydrogenase Maturation2009

    • Author(s)
      S.Watanabe, T.Arai, R.Matsumi, H.Atomi, T.Imanaka, K.Miki
    • Journal Title

      J.Mol.Biol. 394

      Pages: 448-459

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Studiy of [NiFe] Hydrogenase Maturation Proteins, HypC, HypD, and HypE from Thermococcus kodakaraensis KOD12009

    • Author(s)
      S. Watanab, K. Miki
    • Journal Title

      Photon Factory Activity Report 2007 25(PartA)

      Pages: 44-45

    • Related Report
      2008 Annual Research Report
  • [Journal Article] ヒドロゲナーゼ成熟化因子群の構造生物学2008

    • Author(s)
      渡部 聡, 三木邦夫
    • Journal Title

      化学と生物

      Volume: 46 Pages: 608-613

    • Related Report
      2011 Final Research Report
  • [Journal Article] Crystal Structures of[NiFe] Hydrogenase Maturation Proteins, HypC, HypD, and HypE2008

    • Author(s)
      S. Watanabe and K. Miki
    • Journal Title

      SPring-8 Research Frontiers 2007

      Pages: 30-31

    • Related Report
      2011 Final Research Report
  • [Journal Article] Crystal Structures of[NiFe]Hydrogenase Maturation Proteins, HypC, HypD, and HypE2008

    • Author(s)
      S. Watana, K. Miki
    • Journal Title

      SPring-8 Research Frontiers 2007

      Pages: 30-31

    • Related Report
      2008 Annual Research Report
  • [Journal Article] [NiFe]ヒド, ロゲナーゼ成熟化因子群の構造生物学2008

    • Author(s)
      渡部聡, 三木邦夫
    • Journal Title

      化学と生物 46

      Pages: 608-613

    • NAID

      10024334434

    • Related Report
      2008 Annual Research Report
  • [Presentation] Structural basis of[NiFe] hydroge-nase maturation process by Hyp proteins2012

    • Author(s)
      K. Miki
    • Organizer
      Alumni Symposium : Protein Crystallogra-phy in Martinsried, its Beginnings, Maturation, Dissemination, and no End
    • Place of Presentation
      Martinsried, Germany
    • Related Report
      2011 Final Research Report
  • [Presentation] Structural Basis of Maturation Process of [NiFe] Hydrogenase by Hyp Proteins2012

    • Author(s)
      K.Miki
    • Organizer
      Symposium : Protein Crystallography in Martinsried, its Beginnings, Maturation, Dissemination, and no End
    • Place of Presentation
      Max-Planck-Institut fur Biochemie, Martinsried, Germany
    • Related Report
      2010 Annual Research Report
  • [Presentation] Structural Basis of Maturation Process of[NiFe] Hydrogenase by Hyp Proteins2011

    • Author(s)
      K. Miki
    • Organizer
      1st International Symposium on Chemical Biology and Nanotechnology
    • Place of Presentation
      KAIST, Daejeon, Korea
    • Year and Date
      2011-11-12
    • Related Report
      2011 Final Research Report
  • [Presentation] ヒドロゲナーゼ成熟化因子HypBの構造機能解析2011

    • Author(s)
      佐々木大輔, 渡部 聡, 松見理恵, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      日本結晶学会2011年度年会
    • Place of Presentation
      札幌市,北海道大学学術交流会館
    • Related Report
      2011 Final Research Report
  • [Presentation] ヒドロゲナーゼ成熟化に関与するHypFの結晶学的研究2011

    • Author(s)
      富永大河, 渡部 聡, 松見理恵, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      日本結晶学会2011年度年会
    • Place of Presentation
      札幌市,北海道大学学術交流会館
    • Related Report
      2011 Final Research Report
  • [Presentation] Crystal structures of[NiFe] Hydrogenase Maturase Complexes2011

    • Author(s)
      S. Watanabe, R. Matsumi, H. Atomi, T. Imanaka, and K. Miki
    • Organizer
      XXII Congress and General Assembly, International Union of Crystal-lography
    • Place of Presentation
      Madrid, Spain
    • Related Report
      2011 Final Research Report
  • [Presentation] Crystal Structure of Hyp Protein Complexes for[NiFe] Hyodrogenase Maturation2011

    • Author(s)
      S. Watanabe, R. Matsumi, H. Atomi, T. Imanaka, and K. Miki
    • Organizer
      15th International Conference of Biological Inorganic Chemistry
    • Place of Presentation
      Vancouver, Canada
    • Related Report
      2011 Final Research Report
  • [Presentation] ヒドロゲナーゼ成熟化因子Hypタンパク質複合体の結晶構造2011

    • Author(s)
      渡部 聡, 松見理恵, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      第28回PFシンポジウム
    • Place of Presentation
      つくば市,つくば国際会議場エポカル
    • Related Report
      2011 Final Research Report
  • [Presentation] ヒドロゲナーゼ成熟化因子Hypタンパク質の過渡的相互作用の構造基盤2011

    • Author(s)
      渡部 聡, 松見理恵, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      吹田市,ホテル阪急エキスポパーク
    • Related Report
      2011 Final Research Report
  • [Presentation] ヒドロゲナーゼ成熟化因子複合体の構造解析2011

    • Author(s)
      渡部 聡, 松見理恵, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌市,札幌コンベンションセンター
    • Related Report
      2011 Final Research Report
  • [Presentation] Crystal Structure of Hyp Protein Complexes for [NiFe] Hyodrogenase Maturation2011

    • Author(s)
      S.Watanabe, R.Matsumi, H.Atomi, T.Imanaka, K.Miki
    • Organizer
      15th International Conference of Biological Inorganic Chemistry, ICBIC15
    • Place of Presentation
      Vancouver, Canada
    • Related Report
      2010 Annual Research Report
  • [Presentation] Crystal Structure of [NiFe] Hyodrogenase Maturation Complexes2011

    • Author(s)
      S.Watanabe, R.Matsumi, H.Atomi, T.Imanaka, K.Miki
    • Organizer
      XXII Congress and General Assembly of the International Union of Crystallography
    • Place of Presentation
      Madrid, Spain
    • Related Report
      2010 Annual Research Report
  • [Presentation] Structural Basis of Maturation Process of [NiFe] Hydrogenase by Hyp Proteins2010

    • Author(s)
      K.Miki
    • Organizer
      1st International Symposium on Chemical Biology and Nanotechnology
    • Place of Presentation
      KAIST, Daejeon, Korea
    • Year and Date
      2010-11-12
    • Related Report
      2010 Annual Research Report
  • [Presentation] ヒドロゲナーゼ成熟化におけるHypタンパク質複合体の結晶構造2010

    • Author(s)
      渡部 聡, 松見理恵, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      日本結晶学会2010年度年会
    • Place of Presentation
      吹田市,大阪大学コンベンションセンター
    • Related Report
      2011 Final Research Report
  • [Presentation] Crystal structures of the Hyp proteins for[NiFe] hydrogenase maturation2010

    • Author(s)
      S. Watanabe, T. Arai, R. Matsumi, H. Atomi, T. Imanaka, and K. Miki
    • Organizer
      The 10th Conference of the Asian Crystallographic Association AsCA10
    • Place of Presentation
      BEXCO, Busan, Korea
    • Related Report
      2011 Final Research Report
  • [Presentation] Structural Studies of Hyp Proteins for[NiFe] Hydrogenase Maturation2010

    • Author(s)
      S. Watanabe, T. Arai, R. Matsumi, H. Atomi, T. Imanaka, and K. Miki
    • Organizer
      The 9th International Hydroge-nase Conference
    • Place of Presentation
      Uppsala Concert and Congress Hall, Sweden
    • Related Report
      2011 Final Research Report
  • [Presentation] ヒドロゲナーゼ成熟化因子HypAの構造生物学的研究2010

    • Author(s)
      渡部 聡, 新井崇之, 松見理恵, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      第27回PFシンポジウム
    • Place of Presentation
      つくば市,つくば国際会議場エポカル
    • Related Report
      2011 Final Research Report
  • [Presentation] Structural Studies of Hyp Proteins for [NiFe] Hydrogenase Maturation2010

    • Author(s)
      S.Watanabe, T.Arai, R.Matsumi, H.Atomi, T.Imanaka, K.Miki
    • Organizer
      The 9th International Hydrogenase Conference
    • Place of Presentation
      Uppsala Concert and Congress Hall, Sweden
    • Related Report
      2010 Annual Research Report
  • [Presentation] Crystal structures of the Hyp proteins for [NiFe] hydrogenase maturation2010

    • Author(s)
      S.Watanabe, T.Arai, R.Matsumi, H.Atomi, T.Imanaka, K.Miki
    • Organizer
      The 10th Conference of the Asian Crystallographic Association, AsCA10
    • Place of Presentation
      Bexco, Busan, Korea
    • Related Report
      2010 Annual Research Report
  • [Presentation] [NiFe]ヒドロゲナーゼ成熟化因子HypAの結晶構造解析2009

    • Author(s)
      渡部聡, 新井崇之, 松見理恵, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      第82回日本生化学会大会合同大会
    • Place of Presentation
      神戸市, 神戸ポートアイランド
    • Year and Date
      2009-10-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] [NiFe]ヒドロゲナーゼ成熟化因子HypAの結晶構造2009

    • Author(s)
      渡部聡, 新井崇之, 松見理恵, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      熊本市, 熊本全日空ホテルニュースカイ
    • Year and Date
      2009-05-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] ヒドロゲナーゼ成熟化因子HypAの結晶構造解析2009

    • Author(s)
      渡部 聡, 新井崇之, 松見理恵, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      第82回日本生化学会大会合同大会
    • Place of Presentation
      神戸市,神戸ポートアイランド
    • Related Report
      2011 Final Research Report
  • [Presentation] ヒドロゲナーゼ成熟化因子HypAの結晶構造2009

    • Author(s)
      渡部 聡, 新井崇之, 松見理恵, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      熊本市,熊本全日空ホテルニュースカイ
    • Related Report
      2011 Final Research Report
  • [Presentation] Structural Basis of[NiFe] Hydrogenase Maturation by Hyp Proteins2009

    • Author(s)
      S. Watanabe, R. Matsumi, T. Arai, H. Atomi, T. Imanaka, and K. Miki
    • Organizer
      The 6th Asian Biophysical Association(ABA) Symposium and the 27th Hong Kong Society of Neuroscience Annual Meeting
    • Place of Presentation
      Hong Kong, China
    • Related Report
      2011 Final Research Report
  • [Presentation] Crystal Structures of[NiFe]Hydrogenase Maturation Proteins : HypC, HypD and HypE2008

    • Author(s)
      S. Watanabe, R. Matsumi, T. Arai, H. Atomi, T. Imanaka, K. Miki
    • Organizer
      XXI Congress and General Assembly, International Union of Crystallography
    • Place of Presentation
      Osaka International Convention Center
    • Year and Date
      2008-08-26
    • Related Report
      2008 Annual Research Report
  • [Presentation] ヒドロゲナーゼ活性中心成熟化機構 : Hypタンパク質群の構造と機能2008

    • Author(s)
      渡部聡, 松見理恵, 新井崇之, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      第8回日本蛋白質科学会年会(招待講演)
    • Place of Presentation
      東京都江戸川区, タワーホール船堀
    • Year and Date
      2008-06-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] Crystal Structures of[NiFe] Hydrogenase Maturation Proteins : HypC, HypD and HypE2008

    • Author(s)
      S. Watanabe, R. Matsumi, T. Arai, H. Atomi, T. Imanaka, and K. Miki
    • Organizer
      XXI Congress and General Assembly, International Union of Crystallography
    • Place of Presentation
      Osaka, Japan
    • Related Report
      2011 Final Research Report
  • [Presentation] ヒドロゲナーゼ活性中心成熟化機構:Hypタンパク質群の構造と機能2008

    • Author(s)
      渡部 聡, 松見理恵, 新井崇之, 跡見晴幸, 今中忠行, 三木邦夫
    • Organizer
      第8回日本蛋白質科学会年会
    • Place of Presentation
      東京都江戸川区,タワーホール船堀
    • Related Report
      2011 Final Research Report
  • [Book] [NiFe] Hydrogenase Maturing Proteins, HypC, HypD, and HypE, Handbook of Metalloproteins, Vol.42011

    • Author(s)
      S. Watanabe and K. Miki
    • Publisher
      John Wiley & Sons Ltd.
    • Related Report
      2011 Final Research Report
  • [Book] Handbook of Metalloproteins (A.Messerschmidt, et al. eds.) [web version]2009

    • Author(s)
      S.Watanabe, K.Miki
    • Publisher
      John Wiley & Sons Ltd
    • Related Report
      2009 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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