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Study on basic construction of tree DNA barcoding for forest resource conservation and its effectiveness

Research Project

Project/Area Number 20248017
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Forest science
Research InstitutionForestry and Forest Products Research Institute

Principal Investigator

YOSHIMARU Hiroshi  独立行政法人森林総合研究所, 多摩森林科学園, 園長 (20353914)

Co-Investigator(Kenkyū-buntansha) SUZUKI Mitsuo  東北大学, 植物園, 教授 (80111483)
ITO Motomi  東京大学, 総合文化研究科, 教授 (00193524)
TACHIDA Hidenori  九州大学, 理学研究院, 教授 (70216985)
TSUMURA Yoshihiko  独立行政法人森林総合研究所, 森林遺伝研究領域, 領域長 (20353774)
FUJII Tomoyuki  独立行政法人森林総合研究所, 関西支所, 支所長 (60353835)
NOSHIRO Shuichi  独立行政法人森林総合研究所, 木材特性研究領域, チーム長 (30343792)
KAWAHARA Takayuki  独立行政法人森林総合研究所, 北海道支所, グループ長 (70353654)
YOSHIMURA Kensuke  独立行政法人森林総合研究所, 森林遺伝研究領域, チーム長 (30353915)
Co-Investigator(Renkei-kenkyūsha) JINBO Utsugi  東京大学, 総合文化研究科, 特任研究員 (10568281)
SUZUKI Setsuko  独立行政法人森林総合研究所, 森林遺伝研究領域, 研究員 (70456622)
KATSUKI Toshio  独立行政法人森林総合研究所, 多摩森林科学園, 主任研究員 (10353640)
OHTANI Masato  独立行政法人森林総合研究所, 林木育種センター遺伝資源部, 研究員 (50582756)
TANAKA Takahisa  東北大学, 植物園 (40463773)
Project Period (FY) 2008 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥46,800,000 (Direct Cost: ¥36,000,000、Indirect Cost: ¥10,800,000)
Fiscal Year 2011: ¥10,920,000 (Direct Cost: ¥8,400,000、Indirect Cost: ¥2,520,000)
Fiscal Year 2010: ¥10,920,000 (Direct Cost: ¥8,400,000、Indirect Cost: ¥2,520,000)
Fiscal Year 2009: ¥11,830,000 (Direct Cost: ¥9,100,000、Indirect Cost: ¥2,730,000)
Fiscal Year 2008: ¥13,130,000 (Direct Cost: ¥10,100,000、Indirect Cost: ¥3,030,000)
KeywordsDNAバーコード / 日本産樹木 / 種識別 / 葉緑体DNA / 塩基配列情報 / バーコード / 塩基配列情
Research Abstract

There are more than 1, 100 woody plant species in Japan. The specimen of about 7, 000 individuals including about 1, 000 species were collected and their DNA sequences of three regions on chloroplast DNA were analyzed. It is clarified that 75% of all species can be identified by DNA barcoding with these sequences. Since all tissues of plant body hold the same DNA, DNA barcoding can be applied to identify species name using samples of root, timber, and pieces of seed and/or leaf which are difficult to identify by observation of outer shape.

Report

(6 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report   Self-evaluation Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (36 results)

All 2012 2011 2010 2009 2008 Other

All Journal Article (14 results) (of which Peer Reviewed: 14 results) Presentation (19 results) Remarks (3 results)

  • [Journal Article] 日本産樹木DNAバーコーディングの現状20102012

    • Author(s)
      吉村研介・鈴木節子・田中孝尚・鈴木三男・神保宇嗣・伊藤元己・舘田英典・大谷雅人・勝木俊雄・津村義彦・藤井智之・能城修一・河原孝行・吉丸博志
    • Journal Title

      関東森林研究

      Volume: (印刷中掲載確定) Pages: 63-63

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 日本産樹木DNAバーコーディングの現状20102012

    • Author(s)
      吉村研介、鈴木節子, 他
    • Journal Title

      関東森林研究

      Volume: 63(印刷中)(掲載確定)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 日本産樹木DNAバーコーディングの現状20092011

    • Author(s)
      吉村研介・鈴木節子・田中孝尚・鈴木三男・神保宇嗣・伊藤元己・舘田英典・大谷雅人・勝木俊雄・津村義彦・藤井智之・能城修一・河原孝行・吉丸博志
    • Journal Title

      関東森林研究

      Volume: 62 Pages: 79-82

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 日本産樹木DNAバーコーディングの現状(2009)2011

    • Author(s)
      吉村研介, 鈴木節子, 他12名
    • Journal Title

      関東森林研究 62

      Pages: 79-82

    • Related Report
      2010 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Current progress in DNA barcoding and future implications for entomology2011

    • Author(s)
      Jinbo U
    • Journal Title

      Entomological Science

      Volume: 14 Pages: 107-124

    • NAID

      10030579458

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic structure and putative selective sweep in pioneer tree Zanthoxylum ailanthides2010

    • Author(s)
      Yoshida T, Nagai H, Yahara T, Tachida H
    • Journal Title

      Journal of Plant Research

      Volume: 123 Pages: 607-616

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic structure and putative selective sweep in pioneer tree, Zanthoxylum ailanthides.2010

    • Author(s)
      Yoshida T, Nagai H, Yahara T, Tachida H
    • Journal Title

      Journal of Plant Research 123

      Pages: 607-616

    • Related Report
      2010 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Genetic structure and putative selective sweep in pioneer tree, Zanthoxylum ailanthoides.2010

    • Author(s)
      Yoshida T
    • Journal Title

      Journal of Plant Research

      Volume: 123 Pages: 607-616

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Plant diversity on Lombok Island, Indonesia : An approach using DNA barcodes.2010

    • Author(s)
      Tobe H
    • Journal Title

      Acta.Phytotax.Geobot.

      Volume: 61 Pages: 93-108

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 日本産樹木DNAバーコーディングの現状(2008)2010

    • Author(s)
      吉村研介
    • Journal Title

      関東森林研究

      Volume: 61 Pages: 79-82

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development and characterization of microsatellite markers in Zanthoxylum ailanthoides (Rutaceae)2009

    • Author(s)
      Nagai H
    • Journal Title

      Molecular Ecology Resource 9

      Pages: 667-669

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNAバーコーディングによる同定支援システムとJBOLI構想2008

    • Author(s)
      神保宇嗣・吉武啓・伊藤元己
    • Journal Title

      日本生態学会誌

      Volume: 58 Pages: 123-130

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] DNAバーコーディングによる同定支援システムとJBOLI構想2008

    • Author(s)
      神保宇嗣・吉武啓・伊藤元己
    • Journal Title

      日本生態学会誌 58

      Pages: 123-130

    • Related Report
      2010 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] DNAバーコーディングによる同定支援システムとJBOLI構想2008

    • Author(s)
      神保宇嗣
    • Journal Title

      日本生態学会誌 58

      Pages: 123-130

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] 日本産樹木DNAバーコーディング-2010年度rbcLとmatK-2012

    • Author(s)
      吉村研介, 他
    • Organizer
      第123回日本森林学会大会
    • Place of Presentation
      宇都宮大学(宇都宮)
    • Year and Date
      2012-03-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] DNA barcoding of woody plants in Japan-Focus on some taxonomic groups2011

    • Author(s)
      Setsuko S. Yoshimura K, Katsuki T, Ohtani M, Noshiro S, Fujii T, Suzuki M, Tanaka T, Tachida H, Ito M, Jinbo U, Kawahara T, Tsumura Y, Yoshimaru H
    • Organizer
      Fourth International Barcode of Life Conference
    • Place of Presentation
      University of Adelaide(Adelaide, Australia)
    • Year and Date
      2011-12-01
    • Related Report
      2011 Final Research Report
  • [Presentation] Possiblity of identification at species and population levels for the genus Daphne(Thymelaeaceae) by DNA barcoding2011

    • Author(s)
      Kawahara T, Yoshimura K, Yamashita N, Miyaura T, Lei T, Yoshimaru H
    • Organizer
      Fourth International Barcode of Life Conference
    • Place of Presentation
      University of Adelaide(Adelaide, Australia)
    • Year and Date
      2011-12-01
    • Related Report
      2011 Final Research Report
  • [Presentation] Current status of the Japanese Barcode of Life Initiative(JBOLI)2011

    • Author(s)
      Jinbo U, Ito M
    • Organizer
      Fourth International Barcode of Life Conference
    • Place of Presentation
      University of Adelaide(Adelaide, Australia)
    • Year and Date
      2011-12-01
    • Related Report
      2011 Final Research Report
  • [Presentation] Molecular phylogeny and ecological evolution on Daphne(Thyelaeaceae)2011

    • Author(s)
      Kawahara T, Yamashita N, Lei T, Miyaura T, Ohi-Toma T, Murata J
    • Organizer
      XVIII International Botanical Congress
    • Place of Presentation
      University of Melbourne(Melbourne, Australia)
    • Year and Date
      2011-07-24
    • Related Report
      2011 Final Research Report
  • [Presentation] Molecular phylogeny and ecological evolution on Dphne (Tymelaeaceae)2011

    • Author(s)
      Kawahara T., et al
    • Organizer
      XVIII International Botanical Congress
    • Place of Presentation
      Univ.Melbourne (Melbourne)
    • Year and Date
      2011-07-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] DNA barcoding of woody plants in Japan-Focus on some taxonomic groups2011

    • Author(s)
      Setsuko S., et al
    • Organizer
      Fourth International Barcode of Life Conference
    • Place of Presentation
      Univ.Adelaide (Adelaide)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Possibility of identification at species and population levels for the genus Daphne (Thymelaeaceae) by DNA barcoding2011

    • Author(s)
      Kawahara T., et al
    • Organizer
      Fourth International Barcode of Life Conference
    • Place of Presentation
      Univ.Adelaide (Adelaide)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Current status of the Japanese Barcode of Life Initiative (JBOLI)2011

    • Author(s)
      Jinbo U., et al
    • Organizer
      Fourth International Brcode of Life Conference
    • Place of Presentation
      Univ.Adelaide (Adelaide)
    • Related Report
      2011 Annual Research Report
  • [Presentation] DNA barcoding of Japanese woody plants2010

    • Author(s)
      Yoshimura K, Ohtani M, Suzuki S, Katsuki T, Suzuki M, Tanaka T, Noshiro S, Fujii T, Tachida H, Ito M, Jinbo U, Tsumura Y, Kawahara T, Yoshimaru H
    • Organizer
      ISBDS2010 International Symposium on Biodiversity "Genome, Evolution and Environment"
    • Place of Presentation
      Nagoya Municipal University(Nagoya, JAPAN)
    • Year and Date
      2010-08-01
    • Related Report
      2011 Final Research Report
  • [Presentation] DNA barcoding of Japanese woody plants2010

    • Author(s)
      Yoshimura K., et al.
    • Organizer
      ISBDS2010 International Symposium on Biodiversity "Genome, Evolution and Environment"
    • Place of Presentation
      Nagoya、Japan
    • Year and Date
      2010-08-01
    • Related Report
      2010 Self-evaluation Report
  • [Presentation] Progress of DNA barcoding on woody plants in Japan2010

    • Author(s)
      Yoshimaru H, Ohtani M, Yoshimura K, Noshiro S, Fujii T, Katsuki T, Setsuko S, Tsumura Y, Kawahara T, Suzuki M, Tanaka T, Tachida H, Ito M, Jinbo U
    • Organizer
      The tree Barcode of Life and Cullman Symposia
    • Place of Presentation
      The New York Botanical Garden(NewYork, USA)
    • Year and Date
      2010-04-16
    • Related Report
      2011 Final Research Report
  • [Presentation] Progress of DNA barcoding on woody plants in Japan2010

    • Author(s)
      Yoshimaru H., et al
    • Organizer
      The tree Barcode of Life and Cullman Symposia
    • Place of Presentation
      NewYork, USA
    • Year and Date
      2010-04-16
    • Related Report
      2010 Self-evaluation Report
  • [Presentation] Progress of DNA barcoding on woody plants in Japan2010

    • Author(s)
      Yoshimaru H
    • Organizer
      The tree Barcode of Life and Cullman Symposia
    • Place of Presentation
      The New York Botanical Barden (New York, USA)
    • Year and Date
      2010-04-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] 樹木識別あるいは系統解析におけるバーコード情報の可能性2010

    • Author(s)
      舘田英典
    • Organizer
      日本森林学会大会発表データベース、121:B11
    • Place of Presentation
      筑波大学
    • Year and Date
      2010-04-04
    • Related Report
      2010 Self-evaluation Report
  • [Presentation] 樹木DNAバーコードデータベースの構築2010

    • Author(s)
      神保宇嗣・伊藤元己
    • Organizer
      日本森林学会大会発表データベース、121:B06
    • Place of Presentation
      筑波大学
    • Year and Date
      2010-04-04
    • Related Report
      2010 Self-evaluation Report
  • [Presentation] DNA barcoding on woody plants in Japan2009

    • Author(s)
      Yoshimaru H, Ohtani M, Yoshimura K, Suzuki M, Tanaka T, Noshiro S, Fujii T, Tachida H, Nagai H, Ito M, Jinbo U, Tsumura Y, Kawahara T
    • Organizer
      Third International Barcode of Life Congress
    • Place of Presentation
      Mexican Academy of Science(Mexico City, Mexico)
    • Year and Date
      2009-11-10
    • Related Report
      2011 Final Research Report
  • [Presentation] 日本産樹木DNAバーコーディング-2008年度進捗状況-2009

    • Author(s)
      吉村研介
    • Organizer
      日本森林学会大会、120:Pb1-31
    • Place of Presentation
      京都
    • Year and Date
      2009-03-26
    • Related Report
      2008 Annual Research Report
  • [Presentation] DNA barcoding on woody plants in Japan2009

    • Author(s)
      Yoshimaru H., et al
    • Organizer
      Third International Barcode of Life Congress
    • Place of Presentation
      Mexico City, Mexico
    • Related Report
      2010 Self-evaluation Report 2009 Annual Research Report
  • [Remarks] (1)データベースBOLD SYSTEMS(Barcode of Life Data System)の中に、JWP(Japanese Woody Plants、日本産樹木)プロジェクトのページを立ち上げ、収集した日本産樹種の個体別の標本情報、DNA塩基配列情報を収録している。現在は未公開であるが、約2年後に公開を予定している

    • URL

      http://www.boldsystems.org/index.php/Login/page

    • Related Report
      2011 Final Research Report
  • [Remarks] (2)シンポジウム「樹木のDNAバーコーディングの進捗と今後の展開に向けて」コーディネータ:吉丸博志、第121回日本森林学会大会テーマ別シンポジウム、2010.04.04

    • Related Report
      2011 Final Research Report
  • [Remarks] パンフレット「DNAバーコーディング-生物の同定と種の多様性管理のための新しいツール-」2010.12.29(発行:日本バーコードオブライフイニシアチブ、伊藤元己研究室)

    • Related Report
      2010 Self-evaluation Report

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Published: 2008-04-01   Modified: 2025-11-18  

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