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Metagenomic Analysis of Oral Microbiota from Normal Subjects and Patients with Periodontal Disease

Research Project

Project/Area Number 20249082
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Periodontal dentistry
Research InstitutionAichi Gakuin University

Principal Investigator

NOGUCHI Toshihide  Aichi Gakuin University, 歯学部, 教授 (50014262)

Co-Investigator(Kenkyū-buntansha) KOJIMA Toshio  浜松医科大学, 実験実習器機センター, 准教授 (00311340)
MORITA Hidetoshi  麻布大学, 獣医学部, 准教授 (70257294)
HAYASHI Junichiro  愛知学院大学, 歯学部, 講師 (30350937)
Co-Investigator(Renkei-kenkyūsha) FUKUDA Mitsuo  愛知学院大学, 歯学部, 教授 (40156790)
ISHIHARA Yuichi  愛知学院大学, 歯学部, 准教授 (50261011)
KAMEI Hidehiko  愛知学院大学, 歯学部, 助教 (50421243)
HATTORI Masahira  東京大学, 新領域創成科学研究科, 教授 (70175537)
TOH Hidehiro  理化学研究所, 計算生命科学研究センター, 研究員 (10353468)
Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥48,360,000 (Direct Cost: ¥37,200,000、Indirect Cost: ¥11,160,000)
Fiscal Year 2010: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Fiscal Year 2009: ¥15,860,000 (Direct Cost: ¥12,200,000、Indirect Cost: ¥3,660,000)
Fiscal Year 2008: ¥23,920,000 (Direct Cost: ¥18,400,000、Indirect Cost: ¥5,520,000)
Keywordsメタゲノム解析 / 口腔細菌叢 / 歯周病関連細菌 / 歯周炎 / ゲノムDNA抽出 / 歯肉縁上プラーク / 歯肉縁下プラーク / 16SrRNA遺伝子解析
Research Abstract

A metagenomic analysis of dental plaque microbiota obtained from periodontal healthy subjects and periodontitis patients was performed. The deep sequencing of the seven DNA samples detected total of 996 species and revealed substantially greater microbial diversity in the dental plaque than previously known. The functional binning profiles of these samples were compared with other environmental metagenome datasets such as human gut microbiota. Enrichments of genes in the categories of 'Defense mechanism' and 'carbon hydrate transport and metabolism' were observed in plaque samples.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (22 results)

All 2011 2010 2009 2008 Other

All Journal Article (14 results) (of which Peer Reviewed: 14 results) Presentation (5 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Bifidobacterium kashiwanohense sp.nov., isolated from healthy infant faeces.2010

    • Author(s)
      Morita H, Nakano A, Onoda H, Toh H, Oshima K, Takami H, Murakami M, Fukuda S, Takizawa T, Kuwahara T, Ohno H, Tanabe S, Hattori M.
    • Journal Title

      Int.J.Syst.Evol.Microbiol.(電子版)

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] The effect of horizontal X-ray beam angulation on the detection of furcation defects of mandibular first molars in intraoral radiology.2010

    • Author(s)
      Hishikawa T, Izumi M, Naitoh M, Furukawa M, Yoshinari N, Kawase H, Matsuoka M, Noguchi T, Ariji E.
    • Journal Title

      Dentomaxillofac Radiol. 39

      Pages: 85-90

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] MiR-148a attenuates paclitaxel-resistance of hormone-refractory, drug-resistant prostate cancer PC3 cells by regulating MSK1 expression.2010

    • Author(s)
      Fujita Y, Kojima K, Ohhashi R, Hamada N, Nozawa Y, Kitamoto A, Sato A, Kondo S, Kojima T, Deguchi T, Ito M.
    • Journal Title

      J.Biol.Chem. 285

      Pages: 19076-84

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Lactobacillus equicursoris sp.nov.isolated from the faeces of a thoroughbred racehorse.2010

    • Author(s)
      Morita H, Shimazu M, Shiono H, Toh H, Nakajima F, Akita H, Takagi M, Takami, H, Murakami M, Masaoka T, Tanabe S., Hattori M.
    • Journal Title

      Int.J.Syst.Evol.Microbiol. 60

      Pages: 109-112

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Lactobacillus equicursoris sp.nov.isolated from the faeces of a thoroughbred racehorse2010

    • Author(s)
      Morita, H.
    • Journal Title

      Int.J.Syst.Evol.Microbiol.

      Volume: 60 Pages: 109-112

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Bifidobacterium kashiwanohense sp.nov., isolated from healthy infant faeces2010

    • Author(s)
      Morita, H.
    • Journal Title

      Int.J.Syst.Evol.Microbiol.

      Volume: (電子版)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The effect of horizontal X-ray beam angulation on the detection of furcation defects of mandibular first molars in intraoral radiology.2010

    • Author(s)
      Hishikawa, T.Noguchi, T.
    • Journal Title

      Dentomaxillofac Radiol

      Volume: 39 Pages: 85-90

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MiR-148a attenuates paclitaxel-resistance of hormone-refractory, drug-resistant prostate cancer PC3 cells by regulating MSK 1 expression.2010

    • Author(s)
      Fujita, Y.Kojima, T.
    • Journal Title

      J.Biol.Chem.

      Volume: 285 Pages: 19076-84

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of probiotic Lactobacillus rhamnosus ATCC 53103.2009

    • Author(s)
      Morita H, Toh H, Oshima K, Murakami M, Taylor TD, Igimi S, Hattori M.
    • Journal Title

      J.Bacteriol. 191

      Pages: 7630-7631

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] High-resolution analysis of aberrant regions in autosomal chromosomes in human leukemia THP-1 cell line.2009

    • Author(s)
      Adati N, Huang MC, Suzuki T, Suzuki H, Kojima T.
    • Journal Title

      BMC research notes 2

      Pages: 153-159

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Degradation of vascular endothelial thrombomodulin by arginine-and lysin-specific cysteine proteases from Porphyromonas gingivalis.2009

    • Author(s)
      Inomata M, Ishihara Y, Matsuyama T, Murayama I, Noguchi T, Matsushita K.
    • Journal Title

      J.Periodontol. 8

      Pages: 1511-1517

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of probiotic Lactobacillus rhamnosus ATCC 531032009

    • Author(s)
      Morita H, Toh H, Oshima K, Murakami M, Taylor TD, Igimi S, Hattori M
    • Journal Title

      J.Bacteriol. 191

      Pages: 7630-7631

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-resolution analysis of aberrant regions in autosomal chromosomes in human leukemia THP-1 cell line2009

    • Author(s)
      Adati N, Huang MC, Suzuki T, Suzuki H, Kojima T.
    • Journal Title

      BMC research notes 2

      Pages: 153-159

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Degradation of vascular endothelial thrombomodulin by arginine-and lysin-specific cysteine proteases from Porphyromonas gingivalis2009

    • Author(s)
      Inomata M, Ishihara Y, Matsuyama T, Murayama I, Noguchi T, Matsushita K
    • Journal Title

      J.Periodontol. 80

      Pages: 1511-1517

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] ヒト歯周病細菌叢のメタゲノム解析2011

    • Author(s)
      林潤一郎,近藤伸二、亀井英彦、森田英利、足立直樹、福田光男、Todd D Taylor、石原裕一、小島俊男、野口俊英
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台
    • Year and Date
      2011-03-14
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] Metagenomic analysis of the dental plaque2010

    • Author(s)
      Hayashi J, Kondo S, Morita H, Kamei H, Fukuda M, Ishihara Y, Kojima T, Noguchi T
    • Organizer
      96^<th> American Academy of Periodotology Annual Meeting
    • Place of Presentation
      Honolulu, USA
    • Year and Date
      2010-11-02
    • Related Report
      2010 Final Research Report
  • [Presentation] METAGENOMIC ANALYSIS OF THE DENTAL PLAQUE2010

    • Author(s)
      林潤一郎
    • Organizer
      96^<th> American Academy of Periodotology Annual Meeting
    • Place of Presentation
      Honolulu, USA
    • Year and Date
      2010-11-02
    • Related Report
      2010 Annual Research Report
  • [Presentation] 腸内細菌叢のメタゲノム解析における細菌DNA抽出法の確立2008

    • Author(s)
      上野真理子,菊池真美,森田英利,服部正平, 他
    • Organizer
      第2回日本ゲノム微生物学会
    • Place of Presentation
      大阪
    • Related Report
      2010 Final Research Report
  • [Presentation] 腸内細菌叢のメタゲノム解析における細菌DNA抽出法の確立2008

    • Author(s)
      上野真理子, 菊池真美, 森田英利, 服部正平, 他
    • Organizer
      第2回 日本ゲノム微生物学会
    • Place of Presentation
      大阪
    • Related Report
      2008 Annual Research Report
  • [Book] メタゲノム解析技術の最前線(213)2010

    • Author(s)
      林潤一郎、近藤伸二、森田英利、小島俊男、野口俊英
    • Publisher
      シーエムシー出版
    • Related Report
      2010 Final Research Report
  • [Book] メタゲノム解析技術の最前線2010

    • Author(s)
      林潤一郎
    • Publisher
      シーエムシー出版
    • Related Report
      2010 Annual Research Report
  • [Remarks] ホームページ等

    • Related Report
      2010 Final Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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