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Molecular combination dial and nano-cage

Research Project

Project/Area Number 20300106
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioinformatics/Life informatics
Research InstitutionThe University of Tokyo

Principal Investigator

HAGIYA Masami  The University of Tokyo, 大学院・情報理工学系研究科, 教授 (30156252)

Co-Investigator(Kenkyū-buntansha) TANAKA Fumiaki  東京大学, 大学院・情報理工学系研究科, 助教 (50456159)
Research Collaborator HIRABAYASHI Miki  情報通信研究機構, 研究員
Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥18,590,000 (Direct Cost: ¥14,300,000、Indirect Cost: ¥4,290,000)
Fiscal Year 2010: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2009: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2008: ¥8,060,000 (Direct Cost: ¥6,200,000、Indirect Cost: ¥1,860,000)
KeywordsDNA計算 / DNAナノテク / 三次元ナノ構造 / 分子システム / AFM測定 / DNAナノテクノロジー / 三次元ナノ構造体 / アゾベンゼン / DNAコンピューティング / 3次元ナノ構造 / 自動設計
Research Abstract

We developed a "molecular combination dial," which can be controlled by the order of multiple inputs, and a "nano-cage," which can be combined with the dial.
In detail, we successfully constructed DNA capsules that can be broken by UV light (nano-cage) by inserting a photo-controllable molecule (azobenzene) into DNA buckyballs developed by Mao. Moreover, we developed a molecular machine that can be controlled by the order of UV light irradiation and addition of ATP (molecular combination dial), with the use of a computer program for automatic design.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (41 results)

All 2011 2010 2009 2008

All Journal Article (12 results) (of which Peer Reviewed: 9 results) Presentation (25 results) Book (4 results)

  • [Journal Article] DNA-based Crosstalk Nanorobot Mimicking Amoeba Type of Slime Funguses2011

    • Author(s)
      Miki Hirabayashi, Akio Nishikawa, Fumiaki Tanaka, Masami Hagiya, Hiroaki Kojima, Kazuhiro Oiwa
    • Journal Title

      IEEE NANO (未定,採録決定)

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] DNA-based Crosstalk Nanorobot Mimicking Amoeba Type of Slime Funguses2011

    • Author(s)
      Miki Hirabayashi, Akio Nishikawa, Fumiaki Tanaka, Masami Hagiya, Hiroaki Kojima, Kazuhiro Oiwa
    • Journal Title

      IEEE NANO 2010

      Volume: 掲載確定(印刷中(掲載確定))

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Robust and photo-controllable DNA capsules using azobenzenes2010

    • Author(s)
      Fumiaki Tanaka, Toshio Mochizuki, Xingguo Liang, Hiroyuki Asanuma, Shukichi Tanaka, Katsuyuki Suzuki, Shinichi Kitamura, Akio Nishikawa, Kumiko Ui-Tei, Masami Hagiya
    • Journal Title

      Nano Letters Vol.10(9)

      Pages: 3560-3565

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] 分子ロボティクス研究のはじめ方2010

    • Author(s)
      田中文昭
    • Journal Title

      日本ロボット学会誌2010 Vol.28(10)

      Pages: 3-6

    • NAID

      10027648087

    • Related Report
      2010 Final Research Report
  • [Journal Article] Robust and photo-controllable DNA capsules using azobenzenes2010

    • Author(s)
      Fumiaki Tanaka, Toshio Mochizuki, Xingguo Liang, Hiroyuki Asanuma, Shukichi Tanaka, Katsuyuki Suzuki, Shin'ichi Kitamura, Akio Nishikawa, Kumiko Ui-Tei, Masami Hagiya
    • Journal Title

      Nano Letters

      Volume: 10(9) Pages: 3560-3565

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 分子ロボティクス研究のはじめ方2010

    • Author(s)
      田中文昭
    • Journal Title

      日本ロボット学会誌2010

      Volume: 28(10) Pages: 3-6

    • NAID

      10027648087

    • Related Report
      2010 Annual Research Report
  • [Journal Article] DNAセンサ,DNAアクチュエータ,DNAロボット2010

    • Author(s)
      川又生吹, 平林美樹, 西川明男
    • Journal Title

      日本ロボット学会誌2010

      Volume: 28(10) Pages: 14-19

    • NAID

      10027648122

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Automatic Design of DNA Logic Gates Based on Kinetic Simulation2009

    • Author(s)
      Ibuki Kawamata, Fumiaki Tanaka, Masami Hagiya
    • Journal Title

      DNA Computing and Molecular Programming : 15th International Conference, Lecture Notes in Computer Science 5877

      Pages: 88-96

    • Related Report
      2010 Final Research Report 2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Towards DNA Comparator : The Machine That Compares DNA Concentrations2009

    • Author(s)
      Fumiaki Tanaka, Takashi Tsuda, Masami Hagiya
    • Journal Title

      The 14th International Meeting on DNA Computing, Lecture Notes in Computer Science 5347

      Pages: 11-20

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Towards DNA Comparator: The Machine That Compares DNA Concentrations2009

    • Author(s)
      Fumiaki Tanaka, Takashi Tsuda, and Masami Hagiya
    • Journal Title

      The 14th International Meeting on DNA Computing, Lecture Notes in Computer Science 5347

      Pages: 11-20

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multi-fueled approach to DNA nano-robotics2008

    • Author(s)
      Akio Nishikawa, Satsuki Yaegashi, Fumiaki Tanaka, Kazumasa Ohtake, Masami Hagiya
    • Journal Title

      Natural Computing Vol.7

      Pages: 371-383

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Multi-fueled approach to DNA nano-robotics2008

    • Author(s)
      Akio Nishikawa, Satsuki Yaegashi, Fumiald Tanaka, Kazumasa Ohtake and Masami Hagiya
    • Journal Title

      Natural Computing 7

      Pages: 371-383

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] Design and Evolution of Autonomous Molecular Systems in DNA Nanoengineering and Synthetic Biology2010

    • Author(s)
      萩谷昌己
    • Organizer
      SICE 2010 Annual Conference
    • Place of Presentation
      Taipei(Taiwan)
    • Year and Date
      2010-08-21
    • Related Report
      2010 Final Research Report
  • [Presentation] Design and Evolution of Autonomous Molecular Systems in DNA Nanoengineering and Synthetic Biology2010

    • Author(s)
      Masami Hagiya
    • Organizer
      SICE 2010 Annual Conference
    • Place of Presentation
      Taipei (Taiwan)
    • Year and Date
      2010-08-21
    • Related Report
      2010 Annual Research Report
  • [Presentation] Automatically Designed DNA Automaton2010

    • Author(s)
      川又生吹, 田中文昭, 萩谷昌己
    • Organizer
      The 16th International Meeting on DNA Computing and Molecular Programming
    • Place of Presentation
      Hong Kong
    • Year and Date
      2010-06-16
    • Related Report
      2010 Final Research Report
  • [Presentation] Automatically Designed DNA Automaton2010

    • Author(s)
      Ibuki Kawamata, Fumiaki Tanaka, Masami Hagiya
    • Organizer
      The 16th International Meeting on DNA Computing and Molecular Programming
    • Place of Presentation
      Hong Kong, China
    • Year and Date
      2010-06-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] Towards a controllable 3D DNA nanostructure2010

    • Author(s)
      Fumiaki Tanaka, Akio Nishikawa, Ibuki Kawamata, Masami Hagiya
    • Organizer
      Foundations of Nanoscience 2010
    • Place of Presentation
      Snowbird(USA)
    • Year and Date
      2010-04-29
    • Related Report
      2010 Final Research Report
  • [Presentation] Towards a controllable 3D DNA nanostructure2010

    • Author(s)
      田中文昭, Akio Nishikawa, 川又生吹, 荻谷昌巳
    • Organizer
      Foundations of Nanoscience 2010
    • Place of Presentation
      snowbird(USA)
    • Year and Date
      2010-04-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] DNAプログラミング~塩基配列設計からDNAナノ構造・分子デバイスの設計まで~2009

    • Author(s)
      田中文昭, 川又生吹, 萩谷昌己
    • Organizer
      計測自動設計学会システム・情報部門学術講演会2009
    • Place of Presentation
      東工大
    • Year and Date
      2009-11-26
    • Related Report
      2010 Final Research Report
  • [Presentation] DNA反応系の自動設計に向けたモデリングの拡張2009

    • Author(s)
      川又生吹, 田中文昭, 萩谷昌己
    • Organizer
      計測自動設計学会システム・情報部門学術講演会2009
    • Place of Presentation
      東工大
    • Year and Date
      2009-11-26
    • Related Report
      2010 Final Research Report
  • [Presentation] DNAプログラミング~塩基配列設計からDNAナノ構造・分子デバイスの設計まで~2009

    • Author(s)
      田中文昭, 川又生吹, 萩谷昌己
    • Organizer
      計測自動設計学会 システム・情報部門 学術講演会2009
    • Place of Presentation
      東工大
    • Year and Date
      2009-11-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] DNA反応系の自動設計に向けたモデリングの拡張2009

    • Author(s)
      川又生吹, 田中文昭, 萩谷昌己
    • Organizer
      計測自動設計学会 システム・情報部門 学術講演会2009
    • Place of Presentation
      東工大
    • Year and Date
      2009-11-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] DNAロボットの自動設計に向かって2009

    • Author(s)
      萩谷昌己
    • Organizer
      計測自動設計学会システム・情報部門学術講演会2009
    • Place of Presentation
      東工大
    • Year and Date
      2009-11-25
    • Related Report
      2010 Final Research Report
  • [Presentation] DNAロボットの自動設計に向かって2009

    • Author(s)
      萩谷昌己
    • Organizer
      計測自動設計学会 システム・情報部門 学術講演会2009
    • Place of Presentation
      東工大
    • Year and Date
      2009-11-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] DNA as a versatile programming language for nano-engineering2009

    • Author(s)
      田中文昭
    • Organizer
      BIC-TA 2009
    • Place of Presentation
      Peking(China)
    • Year and Date
      2009-10-17
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] Toward Self-Assembly of Phage-Like Nanorobot2009

    • Author(s)
      Miki Hirabayashi, Kazuhiro Oiwa, Akio Nishikawa, Fumiaki Tanaka, Masami Hagiya
    • Organizer
      IEEE NANO 2009.
    • Place of Presentation
      Genoa(Italy)
    • Year and Date
      2009-07-29
    • Related Report
      2010 Final Research Report
  • [Presentation] Toward Self-Assembly of Phage-Like Nanorobot2009

    • Author(s)
      Miki Hirabayashi, Kazuhiro Oiwa, Akio Nishikawa, 田中文昭, 荻谷昌巳
    • Organizer
      IEEE NANO 2009
    • Place of Presentation
      Genoa(Italy)
    • Year and Date
      2009-07-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] Toward Automatic Design of DNA Logic Gates and Devices2009

    • Author(s)
      川又生吹, 田中文昭, 萩谷昌己
    • Organizer
      1st International Workshop on Bio-Design Automation.
    • Place of Presentation
      San Fransisco(USA)
    • Year and Date
      2009-07-27
    • Related Report
      2010 Final Research Report
  • [Presentation] Toward Automatic Design of DNA Logic Gates and Devices2009

    • Author(s)
      川又生吹, 田中文昭, 荻谷昌巳
    • Organizer
      1st International Workshop on Bio-Design Automation
    • Place of Presentation
      San Fransisco(USA)
    • Year and Date
      2009-07-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] Development of a DNA Machine That Compares Two Concentrations of DNA2009

    • Author(s)
      田中文昭, 川又生吹, 萩谷昌己
    • Organizer
      15th International Meeting on DNA computing and Molecular Programming.
    • Place of Presentation
      Arkansas(USA)
    • Year and Date
      2009-06-09
    • Related Report
      2010 Final Research Report
  • [Presentation] Development of a DNA Machine That Compares Two Concentrations of DNA2009

    • Author(s)
      田中文昭, 川又生吹, 荻谷昌巳
    • Organizer
      15th International Meeting on DNA computing and Molecular Programming
    • Place of Presentation
      Arkansas(USA)
    • Year and Date
      2009-06-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] Photo-control experiments on DNA tiles with photo-controllable sticky ends2009

    • Author(s)
      Akio Nishikawa, Kazumasa Ohtake, Fumiaki Tanaka, Masami Hagiya
    • Organizer
      Foundations of Nanoscience 2009.
    • Place of Presentation
      スノーバード(アメリカ)
    • Year and Date
      2009-04-22
    • Related Report
      2010 Final Research Report
  • [Presentation] Photo-control experiments on DNA tiles with photo-controllable sticky ends2009

    • Author(s)
      Akio Nishikawa, Kazumasa Ohatake, Fumiaki Tanaka and Masami Hagiya
    • Organizer
      Foundations of Nanoscience 2009
    • Place of Presentation
      スノーバード(アメリカ)
    • Year and Date
      2009-04-22
    • Related Report
      2008 Annual Research Report
  • [Presentation] Towards Photo-controllable Self-assembly of DNA Tiles2008

    • Author(s)
      Akio Nishikawa, Kazumasa Ohtake, Fumiaki Tanaka, Masami Hagiya
    • Organizer
      The 14th International Meeting on DNA Computing.
    • Place of Presentation
      プラハ
    • Year and Date
      2008-06-04
    • Related Report
      2010 Final Research Report
  • [Presentation] Towards Photo-controllable Self-assembly of DNA Tiles2008

    • Author(s)
      Akio Nishikawa, Kazumasa Ohatake, Fumiaki Tanaka and Masami Hagiya
    • Organizer
      The 14th International Meeting on DNA Computing
    • Place of Presentation
      プラハ(チェコ)
    • Year and Date
      2008-06-04
    • Related Report
      2008 Annual Research Report
  • [Presentation] Towards Multi-fueled DNA walker on DNA trails2008

    • Author(s)
      Akio Nishikawa, Kazumasa Ohtake, Fumiaki Tanaka, Masami Hagiya
    • Organizer
      DNA-Based Nanodevice.
    • Place of Presentation
      イェーナ(ドイツ)
    • Year and Date
      2008-05-30
    • Related Report
      2010 Final Research Report
  • [Presentation] Towards Multi-fueled DNA walker on DNA trails2008

    • Author(s)
      Akio Nishikawa, Kazumasa Ohatake, Fumiald Tanaka and Masami Hagiya
    • Organizer
      DNA-Based Nanodevice
    • Place of Presentation
      イェーナ(ドイツ)
    • Year and Date
      2008-05-30
    • Related Report
      2008 Annual Research Report
  • [Book] DNAナノエンジニアリング ナチュラルコンピューティング・シリーズ2011

    • Author(s)
      小宮健, 瀧ノ上正浩, 田中文昭, 浜田省吾, 村田智
    • Total Pages
      202
    • Publisher
      近代科学社
    • Related Report
      2010 Final Research Report
  • [Book] ナチュラルコンピューティング・シリーズ DNAナノエンジニアリング2011

    • Author(s)
      小宮健, 瀧ノ上正浩, 田中文昭, 浜田省吾, 村田智
    • Total Pages
      202
    • Publisher
      近代科学社
    • Related Report
      2010 Annual Research Report
  • [Book] 岩波科学ライブラリー(DNAロボット生命のしかけで創る分子機械)2008

    • Author(s)
      萩谷昌己・西川明男
    • Related Report
      2010 Final Research Report
  • [Book] DNAロボット生命のしかけで創る分子機械2008

    • Author(s)
      萩谷昌己・西川明男
    • Total Pages
      109
    • Publisher
      岩波科学ライブラリー153
    • Related Report
      2008 Annual Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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