• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Strategies to search functional RNAs using yeast as a model system

Research Project

Project/Area Number 20310114
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 基礎ゲノム科学
Research InstitutionThe University of Tokyo

Principal Investigator

ITO Takashi  東京大学, 大学院・理学系研究科, 教授 (90201326)

Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥18,980,000 (Direct Cost: ¥14,600,000、Indirect Cost: ¥4,380,000)
Fiscal Year 2010: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Fiscal Year 2009: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2008: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Keywords非コードRNA / 次世代シーケンシング / 人工染色体 / ヌクレオソーム / RNA-PET / 転写ノイズ / 出芽酵母 / クロマチン / ノイズ / 転写 / ロバストネス
Research Abstract

It is well documented that eukaryotic genome is pervasively transcribed to generate numerous novel non-coding RNAs, but the significance of such transcription remains controversial. We found that yeast cell transcribes a bacterial genome maintained as an artificial chromosome, which should have no biological function, as efficiently as its natural chromosomes. We also showed that limiting transcriptional capacity of yeast leads to a preferential decrease in the level of novel non-coding RNA species identified in recent studies. These results do not contradict with the idea that pervasive transcription is largely functionless.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (10 results)

All 2011 2009 2008

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (4 results)

  • [Journal Article] Translation initiation : a regulatory rolefor poly(A) tracts in front of the AUG codon in Saccharomyces cerevisiae2011

    • Author(s)
      Xia, X., MacKay, V., Yao, X., Wu, J., Miura, F., Ito, T., Morris, D. R.
    • Journal Title

      Genetics

      Volume: 189 Issue: 2 Pages: 469-478

    • DOI

      10.1534/genetics.111.132068

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Translation initiation : a regulatory role for poly (A) tracts in front of the AUG codon in Saccbaromyces cerevisiae2011

    • Author(s)
      Xia, X., MacKay, V, Yao, X., Wu, J., Miura, F., Ito, T., Morris, D.R.
    • Journal Title

      Genetics

      Volume: 189 Pages: 469-478

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Unexpected complexity of the budding yeasttranscriptome2008

    • Author(s)
      Ito, T., Miura, F., Onda, M.
    • Journal Title

      IUBMB Life

      Volume: 60 Issue: 12 Pages: 775-781

    • DOI

      10.1002/iub.121

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Absolute quantification of budding yeasttranscriptome by means of competitive PCRbetween genomic and complementary DNAs2008

    • Author(s)
      Miura, F., Kawaguchi, N., Yoshida, M., Uematsu, C., Kito, K., Sakaki, Y., Ito, T.
    • Journal Title

      BMC Genomics

      Volume: 9 Issue: 1 Pages: 574-574

    • DOI

      10.1186/1471-2164-9-574

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Absolute quantification of budding yeast transcriptome by means of competitive PCR between genomic and complementary DNAs.2008

    • Author(s)
      Miura, F., Kawaguchi, N., Yoshida, M., Uematsu, C., Kito, K., Sakaki, Y., Ito, T.
    • Journal Title

      BMC Genomics 9

      Pages: 574-574

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Unexpected complexity of the budding yeast transcriptome.2008

    • Author(s)
      Ito, T., Miura, F., Onda, M.
    • Journal Title

      IUBMB Life 60

      Pages: 775-781

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] 転写容量の制限によるトランスクリプトーム変動の解析2009

    • Author(s)
      前橋慶一、太田一寿、恩田美雪、伊藤隆司
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      横浜
    • Related Report
      2010 Final Research Report
  • [Presentation] 転写容量の制限によるトランスクリプトーム変動の解析2009

    • Author(s)
      前橋慶一、太田一寿、恩田美雪、伊藤隆司
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      横浜パシフィコ
    • Related Report
      2009 Annual Research Report
  • [Presentation] Unexpected complexity ofthe budding yeast transcriptome2008

    • Author(s)
      Takashi Ito
    • Organizer
      ASBMB2008
    • Place of Presentation
      San Diego, USA
    • Year and Date
      2008-04-06
    • Related Report
      2010 Final Research Report
  • [Presentation] Unexpected complexity of the budding yeast transcriptome2008

    • Author(s)
      Takashi Ito
    • Organizer
      ASBMB2008
    • Place of Presentation
      San Diego, USA
    • Year and Date
      2008-04-06
    • Related Report
      2008 Annual Research Report

URL: 

Published: 2008-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi