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Study on the fluctuation of biomolecules around the thermal equilibriumpoint by means of single molecule measurements.

Research Project

Project/Area Number 20350009
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical chemistry
Research InstitutionOsaka University

Principal Investigator

MIYASAKA Hiroshi  Osaka University, 大学院・基礎工学研究科, 教授 (40182000)

Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥19,240,000 (Direct Cost: ¥14,800,000、Indirect Cost: ¥4,440,000)
Fiscal Year 2010: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2009: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2008: ¥9,880,000 (Direct Cost: ¥7,600,000、Indirect Cost: ¥2,280,000)
Keywords単一分子計測 / 電子移動 / DNA / 構造揺らぎ / 光子統計 / 単一光子計測 / 生体揺らぎ / 電子移動反応
Research Abstract

Apparatus that can measure dynamic behaviors of a single molecule in solution phase was constructed by combining an optical microscope, detectors of the fluorescence, and laser light sources. This apparatus was applied to the elucidation of conformational changes of DNA in water in sub nanosecond to millisecond range. The analysis of photon bunching and anti-bunching behaviors of the fluorescence from a moiety connected with DNA led to the conclusion that the faster conformational rearrangement occurring in several hundreds of ns was followed by the slower one with several-several tens μs time region.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (26 results)

All 2011 2010 2009 2008 Other

All Journal Article (15 results) (of which Peer Reviewed: 10 results) Presentation (8 results) Book (1 results) Remarks (2 results)

  • [Journal Article] Norharmane : Old yet Highly Selective Dual channel Ratiometric Fluoride and Hydrogen Sulfate ion Sensor2011

    • Author(s)
      Arabinda Mallick, Tetsuro Katayama, Yukihide Ishibashi, Masakazu Yasuda, Hiroshi Miyasaka
    • Journal Title

      Analyst

      Volume: 136 Pages: 275-277

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 単一ゲスト分子の動きから高分子材料の架橋反応ダイナミクスを追跡する2011

    • Author(s)
      伊都将司, 宮坂博
    • Journal Title

      高分子

      Volume: 60 Pages: 54-57

    • NAID

      10027789767

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evaluation of radiation force acting on macromolecules by combination of Brownian dynamics simulation with fluorescence correlation spectroscopy.2010

    • Author(s)
      S. Ito, N. Toitani, H. Yamauchi, H. Miyasaka
    • Journal Title

      Phys.Review E. 81[6]

      Pages: 61402-61408

    • Related Report
      2010 Final Research Report
  • [Journal Article] Evaluation of radiation force acting on macromolecules by combination of Brownian dynamics simulation with fluorescence correlation spectroscopy.2010

    • Author(s)
      Syoji Ito, Naoki Toitani, Hiroaki Yamauchi, Hiroshi Miyasaka
    • Journal Title

      Phys.Rev.E

      Volume: 81 Pages: 61402-61408

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nanosecond to submillisecond dynamics in dye-labeled single-stranded DNA, as revealed by ensemble measurements and photon statistics at single-molecule level.2009

    • Author(s)
      T. Kaji, S. Ito, S. Iwai, H. Miyasaka
    • Journal Title

      J.Phys.Chem.B. 113[42]

      Pages: 13917-13925

    • Related Report
      2010 Final Research Report
  • [Journal Article] Microscopic structure and mobility of guest molecules in mesoporous hybrid organosilica: evaluation with single molecule tracking.2009

    • Author(s)
      S. Ito, S. Fukuya, T. Kusumi, Y. Ishibashi, H. Miyasaka, Y. Goto, M. Ikai, T. Tani, S. Inagaki
    • Journal Title

      J.Phys.Chem.C 113[27]

      Pages: 11884-11891

    • Related Report
      2010 Final Research Report
  • [Journal Article] Diffusion processes of single fluorescent molecules in a polymer-based thin material with three-dimensional network.2009

    • Author(s)
      S. Ito, T. Kusumia, S. Takei, H. Miyasaka
    • Journal Title

      Chem. Com. 41

      Pages: 6165-6167

    • Related Report
      2010 Final Research Report
  • [Journal Article] Diffusion coefficient in a photo-curable polymer material, as evaluated by means of single molecule tracking.2009

    • Author(s)
      S. Ito, K. Itoh, S. Pramanik, T. Kusumi, S. Takei, H. Miyasaka
    • Journal Title

      Appl.Phys.Exp. 2

      Pages: 75004-75004

    • Related Report
      2010 Final Research Report
  • [Journal Article] Microscopic Structure and Mobility of Guest Molecules in Mesoporous Hybrid Organosilica : Evaluation with Single Molecule Tracking.2009

    • Author(s)
      S.Ito, S.Fukuya, T.Kusumi, Y.Ishibashi, H.Miyasaka, Y.Goto, M.Ikai, T.Tani, S.Inagaki,
    • Journal Title

      J.Phys.Chem.C 113

      Pages: 11884-11891

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Diffusion Coefficient in a Photo-Curable Polymer Material, as Evaluated by Means of Single Molecule Tracking2009

    • Author(s)
      S.Ito, K.Itoh, S.Pramanik, T.Kusumi, S.Takei, H.Miyasaka
    • Journal Title

      Appl.Phys.Exp. 2

      Pages: 75004-75004

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Naanosecond to Submillisecond Dynamics in Dye-Labeled Single-Stranded DNA, as Revealed by Ensemble Measurements and Photon Statistics at Single-Molecule Level.2009

    • Author(s)
      T.Kaji, S.Ito, S.Iwai, H.Miyasaka
    • Journal Title

      J.Phys.Chem.B. 113

      Pages: 13917-13925

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Diffusion Processes of Single Fluorescent Molecules in a Polymer-Based Thin Material with Three-Dimensional Network2009

    • Author(s)
      S.Ito, T.Kusumi, S.Takei, H.Miyasaka
    • Journal Title

      Chem.Com. 41

      Pages: 6165-6167

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamics of Cyclization, Cycloreversion, and Multa Photochromic Diarylethene Derivative in Crystallphoton Gated Reaction ofne Phase.2008

    • Author(s)
      K. Tani, Y. Ishibashi, H. Miyasaka. S. Kobatake, M. Irie
    • Journal Title

      J. Phys. Chem. C 112

      Pages: 11150-11157

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Systematic Synthesis, Isolation, and Photophysical Properties of Linear-shaped Re(I) Oligomers and Polymers with 2 -20 units.2008

    • Author(s)
      Y. Yamamoto, S. Sawa, Y. Funada, T, Morimoto, M. Falkenstrom, H. Miyasaka, S. Shishido, T. Ozeki, K. Koike, O. Ishitani
    • Journal Title

      J. Am. Chem. Soc. 130

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamics of Cycla Photochromic Dzation, Cycloreversion, and Multiphoton Gated Reaction ofarylethene Derivative in Crystalline Phase.2008

    • Author(s)
      K. Tani, Y. Ishibashi, H. Miyasaka, S. Kobatake, M. Irie
    • Journal Title

      J. Phys. Chem. C 112

      Pages: 11150-11157

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] 単一分子検出法による微小液滴中の溶質発光挙動の研究2011

    • Author(s)
      飯田篤史、伊都将司、宮坂博
    • Organizer
      日本化学会第91春季年会1D1-14
    • Place of Presentation
      神奈川大、横浜
    • Related Report
      2010 Final Research Report
  • [Presentation] 単一分子検出法による微小液滴中の溶質発光挙動の研究2010

    • Author(s)
      飯田篤史、伊都将司、宮坂博
    • Organizer
      光化学討論会
    • Place of Presentation
      千葉
    • Year and Date
      2010-09-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] Poly(2-hydroxyethyl acrylate)薄膜におけるミクロ不均一性とその重合度依存性:単分子追跡による評価2010

    • Author(s)
      前田健太郎、伊都将司、竹井敏、宮坂博
    • Organizer
      2010光化学討論会1P002
    • Place of Presentation
      千葉大学,千葉
    • Related Report
      2010 Final Research Report
  • [Presentation] 単一分子検出法による微小液滴中の溶質発光挙動の研究2010

    • Author(s)
      飯田篤史、伊都将司、宮坂博
    • Organizer
      2010光化学討論会2P091
    • Place of Presentation
      千葉大学,千葉
    • Related Report
      2010 Final Research Report
  • [Presentation] 周期的な近赤外パルスレーザー光照射下における1本鎖DNA・色素結合系の構造揺らぎ:単一分子光子統計の適用2010

    • Author(s)
      梶貴博、伊都将司、岩井成憲、宮坂博
    • Organizer
      日本化学会第90春季年会、1PB123
    • Place of Presentation
      近畿大学、大阪
    • Related Report
      2010 Final Research Report
  • [Presentation] 単分子追跡による高分子簿膜のミクロ不均一性および重合度依存評価2009

    • Author(s)
      前田健太郎
    • Organizer
      第3回分子化学討論会
    • Place of Presentation
      名古屋大学東山キャンパス
    • Year and Date
      2009-09-21
    • Related Report
      2009 Annual Research Report
  • [Presentation] Microscopic heterogeneity in polymer-based thin film materials evaluated with highly sensitive fluorescence microscopy2009

    • Author(s)
      S.Ito, K.Itoh, T.Kusumi, K.Maeda, S.Takei, H.Miyasaka
    • Organizer
      Japan-Korea Symposium on Molecular Science 2009
    • Place of Presentation
      Awaji, Hyogo, Japan.(Invited lecture)
    • Related Report
      2010 Final Research Report
  • [Presentation] Nanosecond conformational dynamics of single stranded DNA labeled with fluorescent dye studied by photon statistics at Single molecule level2008

    • Author(s)
      T. Kaji, S. Ito, S. Iwai, H. Miyasaka
    • Organizer
      The 5th Asian Photochemi stry Conference
    • Place of Presentation
      Beijing, Chia
    • Year and Date
      2008-11-04
    • Related Report
      2008 Annual Research Report
  • [Book] Molecular Nano Dynamics(Construction of micro-spectroscopic systems and their application to the detection of molecular dynamics in a small domain.)(Eds. H. Fukumura et al.)2009

    • Author(s)
      S. Ito, H. Matsuda, T. Sugiyama, N. Toitani, Y. Nagasawa, H. Miyasaka
    • Publisher
      Wiley-VCH, Weinheim
    • Related Report
      2010 Final Research Report
  • [Remarks] ホームページ等

    • URL

      http://www.laser.chem.es.osaka-u.ac.jp/

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://www.laser.chem.es.osaka-u.ac.jp/study/Single/SMT.htm

    • Related Report
      2010 Annual Research Report

URL: 

Published: 2008-04-01   Modified: 2016-04-21  

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