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Designing novel functions of proteins by using an artificial genetic code dictionary

Research Project

Project/Area Number 20350075
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionGifu University

Principal Investigator

YOKOGAWA Takashi  Gifu University, 工学部, 准教授 (90242304)

Co-Investigator(Renkei-kenkyūsha) OHNO Satoshi  岐阜大学, 工学部, 助教 (10345796)
Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥19,890,000 (Direct Cost: ¥15,300,000、Indirect Cost: ¥4,590,000)
Fiscal Year 2010: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2009: ¥7,410,000 (Direct Cost: ¥5,700,000、Indirect Cost: ¥1,710,000)
Fiscal Year 2008: ¥8,450,000 (Direct Cost: ¥6,500,000、Indirect Cost: ¥1,950,000)
Keywordsタンパク質合成系 / PURE システム / tRNA / 固相化プローブ法 / 遺伝暗号表 / 非天然アミノ酸 / Click chemistry / PUREシステム / ピロリシルtRNA合成酵素 / 最小tRNAセット / アグマチン / 分子整形術 / ピロリシン / Click Chemistry / M. acetivorans
Research Abstract

Restriction of the number of endogenous tRNAs in protein synthesis system causes "empty codons" in the genetic code dictionary. If we can create a tRNA that reads "an empty codon" and accepts an unnatural amino acid, it means that we develop an artificial genetic code dictionary. Here, I purified 21 tRNAs from Escherichia coli, and made a minimal tRNA set by remixing an individual tRNA. Actually, yellow fluorescent protein could be synthesized in PURE system with a minimal tRNA set and a chemically synthesized gene having minimal codons. It indicates that proteins having several unnatural amino acids can be effectively synthesized in the future.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (18 results)

All 2010 2009 2008 Other

All Journal Article (10 results) (of which Peer Reviewed: 9 results) Presentation (6 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Functional replacement of the endogenous tyrosyl-tRNA synthetase-tRNA^<Tyr> pair by the archaeal tyrosine pair in Escherichia coli for genetic code expansion.2010

    • Author(s)
      Iraha, F., Oki, K., Kobayashi, T., Ohno, S., Yokogawa, T., Nishikawa, K., Yokoyama, S., Sakamoto, K.
    • Journal Title

      Nucleic Acids Res. Vol.38, No.11

      Pages: 3682-3691

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea.2010

    • Author(s)
      Ikeuchi, Y., Kimura, S., Numata, T., Nakamura, D., Yokogawa, T., Ogata, T., Wada, T., Suzuki, T., Suzuki, T.
    • Journal Title

      Nat.Chem.Biol. Vol.6, No.4

      Pages: 277-282

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Optimization of the hybridization-based method for purification of thermostable tRNAs in the presence of tetraalkylammonium salts2010

    • Author(s)
      Yokogawa, T., Kitamura, Y., Nakamura, D., Ohno, S., Nishikawa, K.
    • Journal Title

      Nucleic Acids Res. Vol.38, No.6

      Pages: 89-89

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Functional replacement of the endogenous tyrosyl-tRNA synthetase-tRNA^<Tyr> pair by the archaeal tyrosine pair in Escherichia coli for genetic code expansion.2010

    • Author(s)
      Iraha, F., et al.
    • Journal Title

      Nucleic Acids Res.

      Volume: 38 Pages: 3682-3691

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea.2010

    • Author(s)
      Ikeuchi, Y., et al.
    • Journal Title

      Nat.Chem.Biol.

      Volume: 6 Pages: 277-282

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] N7-Methylguanine at position 46 (m^7G46) in rRNA from Thermus thermophilus is required for cell viability at high temperatures through a tRNA modification network.2010

    • Author(s)
      Tomikawa, C., et al.
    • Journal Title

      Nucleic Acids Res. 38

      Pages: 942-957

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Optimization of the hybridization-based method for purification of thermostable tRNAs in the presence of tetraalkylammonium salts.2010

    • Author(s)
      Yokogawa, T., et al.
    • Journal Title

      Nucleic Acids Res. 38

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article]2010

    • Author(s)
      Yokogawa, T., et al.
    • Journal Title

      Methods in Molecular Biology (Cell-Free Protein Production)(Humana Press)

      Pages: 227-242

    • Related Report
      2009 Annual Research Report
  • [Journal Article] Aquifex aeolicus tRNA (N2, N2-guanine)-dimethyltransfersae (Trml) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA.2009

    • Author(s)
      Awai, T., et al.
    • Journal Title

      J.Biol.Chem. 284

      Pages: 20467-20478

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Unconventional decoding of the AUA codon as methionine by mitochondrial tRNA^<Met> with the anticodon f5CAU as revealed with a mitochondrial in vitro translation system.2009

    • Author(s)
      Takemoto, C., et al.
    • Journal Title

      Nucleic Acids Res. 37

      Pages: 1616-1627

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] Methanosarcina acetivoransにおけるAUAコドン解読機構2010

    • Author(s)
      横川隆志
    • Organizer
      23回Archaea研究会
    • Place of Presentation
      名古屋
    • Year and Date
      2010-07-09
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] Preparation of an ochre suppressor tRNA recognizing exclusively UAA codon by using the molecular surgery technique.2009

    • Author(s)
      横川隆志
    • Organizer
      核酸化学シンポジウム
    • Place of Presentation
      高山
    • Year and Date
      2009-09-28
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] Methanosarcina acetivoransPylRSを利用した部位特異的リシンアナログ導入タンパク質の合成2009

    • Author(s)
      横川隆志
    • Organizer
      22回Archaea研究会
    • Place of Presentation
      札幌
    • Year and Date
      2009-07-11
    • Related Report
      2010 Final Research Report
  • [Presentation] Methanosarcina acetivorans PyIRSを利用した部位特異的リシンアナログ導入タンパク質の合成2009

    • Author(s)
      横川隆志
    • Organizer
      22回Archaea研究会
    • Place of Presentation
      札幌
    • Year and Date
      2009-07-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] Methanosarcina acetivoransピロリシルtRNA合成酵素を利用したタンパク質の部位特異的修飾の試み2008

    • Author(s)
      横川隆志
    • Organizer
      第10回RNAミーティング
    • Place of Presentation
      札幌
    • Year and Date
      2008-07-23
    • Related Report
      2010 Final Research Report 2008 Annual Research Report
  • [Presentation] Methanosarcina acetivoransの非標準アミノアシルtRNA合成酵素を利用した非標準アミノ酸含有タンパク質合成の試み2008

    • Author(s)
      横川隆志
    • Organizer
      21回Archaea研究会
    • Place of Presentation
      沖縄
    • Year and Date
      2008-07-05
    • Related Report
      2008 Annual Research Report
  • [Book] Incorporation of 3-Azidotyrosine into Proteins Through Engineering Yeast Tyrosyl-tRNA Synthetase and Its Application to Site-Selective Protein Modification.(Cell-Free Protein Production)2010

    • Author(s)
      Yokogawa, T., Ohno, S., Nishikawa, K.
    • Publisher
      Humana Press,Methods Mol. Biol.
    • Related Report
      2010 Final Research Report
  • [Remarks] ホームページ等特に記載すべき事項なし

    • Related Report
      2010 Final Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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