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Crystal structure of human Band3 (anion exchanger)

Research Project

Project/Area Number 20370035
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

KOBAYASHI Takuya  Kyoto University, 医学研究科, 講師 (20311730)

Co-Investigator(Kenkyū-buntansha) MURATA Takeshi  千葉大学, 理学研究科, 特任准教授 (80415322)
Co-Investigator(Renkei-kenkyūsha) IWATA So  京都大学, 医学研究科, 教授 (60452330)
Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥19,890,000 (Direct Cost: ¥15,300,000、Indirect Cost: ¥4,590,000)
Fiscal Year 2010: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2009: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2008: ¥7,670,000 (Direct Cost: ¥5,900,000、Indirect Cost: ¥1,770,000)
KeywordsX線結晶解析 / 赤血球 / アニオントランスポーター / バンド3 / 結晶構造解析 / 抗体 / 共結晶
Research Abstract

Anion exchanger (AE) gene family consists of four members, AE1-4. These AE proteins are present in most cells and regulate intracellular pH and chloride (Cl-) by the exchange transport of anions across membranes. Band 3, designated AE1, is the major integral membrane protein of the red blood cells and intercalated cells of the distal and collecting tubules of the kidney. Band 3, consisting of 911 amino acids, has two principal structural domains. Its 40 kDa N-terminal domain in the cytoplasm binds the red blood cell skeleton proteins and has a role in maintaining the shape of erythrocytes. While the membrane domain of human erythrocyte Band3 works as a Cl^-/HCO_3^- antiporter. This exchange is a key step for CO_2/O_2 circulation in the blood. In spite of their importance, structural information about Band3 is still unknown. We used X-ray crystallography to solve the three-dimensional structure of Band3, fixed in an outward-open conformation by cross-linking, at 3.4Å resolution. Band3 are formed as a dimmer in complex with Fab fragments. There are V-shaped densities near the center of the dimmer.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (28 results)

All 2011 2010 2009 2008 Other

All Journal Article (16 results) (of which Peer Reviewed: 16 results) Presentation (7 results) Book (3 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Evaluation of the Pichia pastoris expression system for the production of GPCRs for structural analysis.2011

    • Author(s)
      H.Asada, T.Uemura, T.Yurugi-Kobayashi, M.Shiroishi, T.Shimamura, H.Tsujimoto, K.Ito, T.Sugawara, T.Nakane, N.Nomura, T.Murata, T.Haga, S.Iwata, T.Kobayashi.
    • Journal Title

      Microbial Cell Factories (in press)

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cloning, expression and purification of the anion exchanger 1 homologue from the basidiomycete Phanerochaete chrysosporium.2011

    • Author(s)
      N.Tokuda, K.Igarashi, T.Shimamura, T.Yurugi-Kobayashi, M.Shiroishi, K.Ito, T.Sugawara, H.Asada, T.Murata, N.Nomura, S.Iwata, T.Kobayashi.
    • Journal Title

      Protein Expr. Purif. (in press)

    • NAID

      120003255719

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cysteine-to-serine shuffling using a yeast expression system improves protein secretion : case of a nonglycosylated mutant of miracullin, a taste-modifying protein.2011

    • Author(s)
      K.Ito, T.Sugawara, A.Koizumi, K.Nakajima, A.Shimizu-Ibuka, M.Shiroishi, H.Asada, T.Yurugi-Kobayashi, T.Shimamura, T.Asada, T.Misaka, S.Iwata, T.Kobayashi, K.Abe.
    • Journal Title

      Biotech. Lett. 33

      Pages: 103-107

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of Glucansucrase form the dental caries pathogen Streptococcus mutans.2011

    • Author(s)
      K.Ito, S.Ito, T.Shimamura, S.Weyand, Y.Kawarasaki, T.Misaka, K.Abe, T.Kobayashi, A.D.Cameron, S.Iwata.
    • Journal Title

      J.Mol.Biol. (in press)

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray analysis of a Glucansucrase from the dental caries pathogen Streptococcus mutans.2010

    • Author(s)
      K.Ito, S.Ito, T.Shimamura, Y.Kawarasaki, T.Kobayashi, S.Iwata.
    • Journal Title

      Acta. Crystallogr. Sect.F 66

      Pages: 1086-1088

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Bulky high-mannose-type N-glycan blocks the taste-modifying activity of miraculin. Biochim.2010

    • Author(s)
      K.Ito, T.Sugawara, A.Koizumi, K.I.Nakajima, A.Shimizu-Ibuka, M.Shiroishi, H.Asada, T.Yurugi-Kobayashi, T.Shimamura, T.Asakura, K.Masuda, M.Ishiguro, T.Misaka, S.Iwata, T.Kobayashi, K.Abe.
    • Journal Title

      Biophys. Acta. 1800

      Pages: 986-992

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of the β-D-glucopyranoside binding site of the human bitter taste receptor hTAS2R16.2010

    • Author(s)
      T.Sakurai, T.Misaka, M.Ishiguro, K.Masuda, T.Sugawara, K.Ito, T.Kobayashi, S.Matsuo, Y.Ishimaru, T.Asakukra, K.Abe.
    • Journal Title

      J.Biol. Chem. 285

      Pages: 28373-28378

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Bulky high-mannose-type N-glycan blocks the taste-modifying activity of miraculin.2010

    • Author(s)
      Ito K., et al.
    • Journal Title

      Biochim.Biophys.Acta.

      Volume: 1800 Pages: 986-992

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of the beta-D-glucopyranoside binding site of the human bitter taste receptor hTASR16.2010

    • Author(s)
      Sakurai T., et al.
    • Journal Title

      J.Biol.Chem.

      Volume: 285 Pages: 28373-28378

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray analysis of a glucansucrase form the dental caries pathogen Streptococcus mutants.2010

    • Author(s)
      Ito K., et al.
    • Journal Title

      Acta.Crystallogr.Sect.F Struct.Biol.Cryst.Commun.

      Volume: 66 Pages: 1086-1088

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fluorescence-based optimization of human bitter taste receptor expression in Saccharomyces cerevisiae.2009

    • Author(s)
      T.Sugawara, K.Ito, M.Shiroishi, N.Tokuda, H.Asada, T.Yurugi-Kobayashi, T.Shimamura, T.Misaka, N.Nomura, T.Murata, K.Abe, S.Iwata, T.Kobayashi.
    • Journal Title

      Biochem. Biophys. Res.Commun. 382

      Pages: 704-710

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comparison of functional non-glycosylated GPCRs expression in Pichia pastoris.2009

    • Author(s)
      T.Yurugi-Kobayashi, H.Asada, M.Shiroishi, T.Shimamura, S.Funamoto, N.Katsuta, K.Ito, T.Sugawara, N.Tokuda, H.Tsujimoto, T.Murata, N.Nomura, K.Haga, T.Haga, S.Iwata, T.Kobayashi.
    • Journal Title

      Biochem. Biophys. Res.Commun. 380

      Pages: 271-276

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comparison of functional non-glycosylated GPCRs expression in Pichia pastoris.2009

    • Author(s)
      Takami Yurugi-Kobayashi, et al.
    • Journal Title

      Biochemical and Biophysical Research Communiacations 380

      Pages: 271-276

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fluorescence-based optimization of human bitter taste receptor expression in Saccharomyces cerebisiae.2009

    • Author(s)
      Taishi Sugawara, et al.
    • Journal Title

      Biochemical and Biophysical Research Communiacations (in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Advanced method for high-throughput expression of mutated eukaryotic membrane proteins in Saccharomyces cerevisiae.2008

    • Author(s)
      K.Ito, T.Sugawara, M.Shiroishi, N.Tokuda, A.Kurokawa, T.Misaka, H.Makyio, T.Yurugi-Kobayashi, T.Shimamura, N.Nomura, T.Murata, K.Abe, S.Iwata, T.Kobayashi.
    • Journal Title

      Biochem. Biophys. Res.Commun. 371

      Pages: 841-845

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Interaction and stoichiometry of the peripheral stalk subunits NtpE and NtpF and the N-terminal hydrophilic domain of NtpI of Enterococcus hirae V-ATPase.2008

    • Author(s)
      M.Yamamoto, S.Unzai, S.Saijo, K.Ito, K.Mizutani, C.Suno-Ikeda, Y.Yabuki-Miyata, T.Terada, M.Toyama, M.Shirouzu, T.Kobayashi, Y.Kakinuma, I.Yamato, S.Yokoyama, S.Iwata, T.Murata.
    • Journal Title

      J.Biol.Chem. 283

      Pages: 19422-19431

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Presentation] Gタンパク共役受容体(GPCR)の三次元結晶構造解析への試み2011

    • Author(s)
      小林拓也
    • Organizer
      第84回日本薬理学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-03-24
    • Related Report
      2010 Final Research Report
  • [Presentation] A GFP-based platform for rapid construction and evaluation of highly expressed and stable GPCR variants in Saccharomyces cerevisiae2010

    • Author(s)
      小林拓也
    • Organizer
      GPCR workshop
    • Place of Presentation
      Hawaii
    • Year and Date
      2010-12-10
    • Related Report
      2010 Final Research Report
  • [Presentation] Yeast expression : a GFP-based platform for rapid construction and evaluation of highly expressed and stable GPCR variants in S.cerevisiae.2010

    • Author(s)
      Takuya Kobayashi
    • Organizer
      GPCR Workshop
    • Place of Presentation
      Hawaii(USA)
    • Year and Date
      2010-12-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] G蛋白質共役受容体(GPCR)の構造解析に向けて「生産から結晶構造解析までの技術開発」2009

    • Author(s)
      小林拓也
    • Organizer
      第82回日本生化学会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-22
    • Related Report
      2010 Final Research Report
  • [Presentation] G蛋白質共役受容体 (GPCR) の構造解析に向けて「生産から結晶構造解析までの技術開発」シンポジウム2009

    • Author(s)
      小林拓也
    • Organizer
      日本生化学会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-21
    • Related Report
      2009 Annual Research Report
  • [Presentation] Towards Structure Determination of Human Membrane Receptors and Production of Functional GPCRs in Pichi pastoris2008

    • Author(s)
      小林拓也
    • Organizer
      第5回GPCR研究会
    • Place of Presentation
      東京
    • Year and Date
      2008-05-09
    • Related Report
      2010 Final Research Report
  • [Presentation] Towards Structure Determination of Human Membrane Receptors -from Prostanoid receptor studies-、播磨放射光施設2008

    • Author(s)
      小林拓也
    • Organizer
      GPCRシンポジウム
    • Year and Date
      2008-02-26
    • Related Report
      2010 Final Research Report
  • [Book] Gタンパク質共役受容体(GPCR)の三次元結晶構造解析への試み、23-292011

    • Author(s)
      小林拓也
    • Publisher
      バイオインダストリー(シーエムシー出版)
    • Related Report
      2010 Final Research Report
  • [Book] Advanced technologies to determine the 3D structure of taste receptors. The Sense of Taste.2011

    • Author(s)
      K.Ito, T.Misaka, K.Abe, T.Kobayashi
    • Publisher
      Nova Science Publishers, Inc.(印刷中)
    • Related Report
      2010 Final Research Report
  • [Book] バイオインダストリー Gタンパク質共役受容体(GPCR)の三次元結晶構造解析への試み2011

    • Author(s)
      小林拓也
    • Publisher
      シーエムシー出版
    • Related Report
      2010 Annual Research Report
  • [Remarks] ホームページ等

    • URL

      http://www.med.kyoto-u.ac.jp/J/grad_school/introduction/1502/

    • Related Report
      2010 Final Research Report
  • [Patent(Industrial Property Rights)] 膜蛋白質の立体構造を認識するモノクローナル抗体のスクリーニング方法2010

    • Inventor(s)
      小林拓也、岩田想, ら
    • Industrial Property Rights Holder
      科学技術振興機構JST
    • Filing Date
      2010
    • Related Report
      2010 Final Research Report

URL: 

Published: 2008-04-01   Modified: 2016-04-21  

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