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Circadian adaptation dynamics of cyanobacterial genome

Research Project

Project/Area Number 20370072
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionWaseda University

Principal Investigator

IWASAKI Hideo  Waseda University, 理工学術院, 准教授 (00324393)

Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥20,670,000 (Direct Cost: ¥15,900,000、Indirect Cost: ¥4,770,000)
Fiscal Year 2010: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2009: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2008: ¥9,880,000 (Direct Cost: ¥7,600,000、Indirect Cost: ¥2,280,000)
Keywordsシアノバクテリア / 概日リズム / 明暗応答 / 環境適応 / Synechococcus / 環境応答 / シグマ因子 / kai遺伝子 / マイクロアレイ
Research Abstract

Based on microarray analysis combined with molecular genetics, we revealed that more than one third of genes on the genome exhibit significant circadian transcription rhythms with peaking at either subjective dawn or dusk under continuous light conditions. When cells were transferred to the dark, most of gene expression was dramatically suppressed and gave rise to serious discrepancy between transcriptomic and proteomic profiles. Moreover, we found less than 8% of genes on the genome were induced even in the dark, and most of them were under the control of the Kai proteins. Since the kai gene mRNAs were rapidly lost in the dark, our observation revealed the first example of clock-controlled transcription without de novo clock gene expression.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (55 results)

All 2011 2010 2009 2008 Other

All Journal Article (10 results) (of which Peer Reviewed: 7 results) Presentation (40 results) Book (4 results) Remarks (1 results)

  • [Journal Article] バイオメディア・アート:美学的見地から観た合成生物学の可能性2010

    • Author(s)
      岩崎秀雄
    • Journal Title

      科学(岩波)

      Volume: 7月号 Pages: 747-754

    • NAID

      40017154497

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Cyanobacterial cell lineage analysis of the spatiotemporal hetR expression profile during heterocyst pattern formation in Anabaena sp. PCC 71202009

    • Author(s)
      H.Asai, S.Iwamori, K.Kawai, S.Ehira, J.Ishihara, K.Aihara, S.Shoji, H.Iwasaki
    • Journal Title

      PLoS ONE 4(10)

    • NAID

      10029355077

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus2009

    • Author(s)
      H.Ito, M.Mutsuda, Y.Murayama, J.Tomita, N.Hosokawa, K.Terauchi, C.Sugita, M.Sugita, T.Kondo, H.Iwasaki
    • Journal Title

      Proc.Natl.Acad.Sci.USA 106

      Pages: 14168-14173

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] クテリアの生物時計-システム解析と構成的アプローチ2009

    • Author(s)
      岩崎秀雄
    • Journal Title

      化学と生物 7月号

    • Related Report
      2010 Final Research Report
  • [Journal Article] Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus2009

    • Author(s)
      Ito, Mutsuda, Murayama, Tomita, Hosokawe, (4 authors), Iwasaki
    • Journal Title

      Proc.Natl.Acad.Sci.USA 106

      Pages: 14168-14173

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cyanobacterial Cell Lineage Analysis of the Spatiotemporal hetR Expression Profile during Heterocyst Pattern Formation in Anabaena sp.PCC 71202009

    • Author(s)
      Asai, Iwamori, Kawai, Ehira, Ishihara, Aihara, Shoji, Iwasaki
    • Journal Title

      PLoS ONE 4

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] バクテリアの生物時計-システム解析と構成的アプローチ2009

    • Author(s)
      岩崎秀雄
    • Journal Title

      化学と生物 47(7)

      Pages: 493-498

    • NAID

      10026435977

    • Related Report
      2009 Annual Research Report
  • [Journal Article] An attempt to reveal a role of a transcription/translation feedback loop in the cyanobacterial KaiC protein-based circadian system by using a semi-synthetic method2008

    • Author(s)
      H.Tozaki, T.Kobe, K.Aihara, H.Iwasaki
    • Journal Title

      Int.J.Bioinform.Res.Appl. 4

      Pages: 435-444

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Proteins found in a CikA-interaction assay link the circadian clock, metabolism, and cell division in Synechococcus elongatus2008

    • Author(s)
      S.R.Mackey, JS.Cho, Y.Kitayama, H.Iwasaki, G.Dong, S.S.Golden
    • Journal Title

      J.Bacteriol. 190

      Pages: 3738-3746

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] An attempt to reveal a role of a transoription/translation feedback loop in the oyanobaoterial KaiC protein-based circadian system by using a semi-synthetic method2008

    • Author(s)
      H. Tozaki, T. Kobe, K. Aihara, H. Iwasaki
    • Journal Title

      Int. J. Bioinform. Res. Appl 4

      Pages: 435-444

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] 概日リズムの低温限界2011

    • Author(s)
      陳墨淵, 村山依子, 伊藤浩史, 郡宏, 岩崎秀雄
    • Organizer
      日本植物生理学会
    • Place of Presentation
      東北大学(大震災対応として大会成立承認済み)
    • Year and Date
      2011-03-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] 多細胞性シアノバクテリアAnabaena sp.PCC7120が刻む概日時計のシステムとは2011

    • Author(s)
      櫛笥博子, 久下沼秀之, 岩崎秀雄
    • Organizer
      日本植物生理学会
    • Place of Presentation
      東北大学(大震災対応として大会成立承認済み)
    • Year and Date
      2011-03-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] シアノバクテリアのゲノムワイドな概日発現リズムの振動機構の解明2011

    • Author(s)
      岩崎秀雄
    • Organizer
      日本ゲノム微生物学会
    • Place of Presentation
      東北学院大学(大震災対応として大会成立承認済み)(招待講演 受賞講演)
    • Year and Date
      2011-03-15
    • Related Report
      2010 Annual Research Report
  • [Presentation] 絶対光要求性シアノバクテリアにおけるシグマ因子を介したエネルギー飢餓条件での概日転写リズムの発見:夜間の遺伝子発現制御メカニズムの解析2011

    • Author(s)
      細川徳宗, 岩崎秀雄
    • Organizer
      日本ゲノム微生物学会
    • Place of Presentation
      東北学院大学(大震災対応として大会成立承認済み)
    • Year and Date
      2011-03-15
    • Related Report
      2010 Annual Research Report
  • [Presentation] 概日リズムの低温限界2011

    • Author(s)
      陳墨淵, 村山依子, 伊藤浩史, 郡宏, 岩崎秀雄
    • Organizer
      時間生物学フォーラム東京
    • Place of Presentation
      早稲田大学
    • Year and Date
      2011-02-12
    • Related Report
      2010 Annual Research Report
  • [Presentation] From cyanobacteria to synthetic cells : their time, shape and art2010

    • Author(s)
      H.Iwasaki
    • Organizer
      SymbioticA Symposium "Unruly Ecology : Biodiversity and Art"
    • Place of Presentation
      西オーストラリア大学 パース,オーストラリア(招待講演)
    • Year and Date
      2010-11-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] 単細胞性シアノバクテリアにおけるシグマ因子の概日発現に関する解析2010

    • Author(s)
      小島崇, 細川徳宗, 岩崎秀雄
    • Organizer
      日本時間生物学会
    • Place of Presentation
      早稲田大学
    • Year and Date
      2010-11-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] 多細胞性シアノバクテリアAnabaenaにおける発光レポーターを用いた概日時計機構の解析2010

    • Author(s)
      久下沼秀之, 櫛笥博子, 岩崎秀雄
    • Organizer
      日本時間生物学会
    • Place of Presentation
      早稲田大学
    • Year and Date
      2010-11-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] 多細胞性シアノバクテリアのコロニー・パターン形成と振動運動2010

    • Author(s)
      深澤裕貴
    • Organizer
      日本時間生物学会
    • Place of Presentation
      早稲田大学
    • Year and Date
      2010-11-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] バクテリアの時空間パターン形成の科学とアート2010

    • Author(s)
      岩崎秀雄
    • Organizer
      医科学研究所サイアート・カフェ
    • Place of Presentation
      東京大学
    • Year and Date
      2010-03-06
    • Related Report
      2009 Annual Research Report
  • [Presentation] 紙とバクテリアの対話について:バイオメディアを用いた科学とアートの現状と課題2010

    • Author(s)
      岩崎秀雄
    • Organizer
      第4回内部観測研究会
    • Place of Presentation
      東京理科大学
    • Year and Date
      2010-03-05
    • Related Report
      2009 Annual Research Report
  • [Presentation] 単細胞性シアノバクテリアにおける光周的遺伝子発現について2010

    • Author(s)
      畠山哲央, 細川徳宗, 岩崎秀雄
    • Organizer
      時間生物学フォーラム東京
    • Place of Presentation
      東京大学
    • Year and Date
      2010-02-13
    • Related Report
      2009 Annual Research Report
  • [Presentation] From cyanobacteria to synthetic cells : their time, shape and art2010

    • Author(s)
      岩崎秀雄
    • Organizer
      SymbioticA Symposium "Unruly Ecology : Biodiversity and Art"
    • Place of Presentation
      西オーストラリア大学,パース
    • Related Report
      2010 Final Research Report
  • [Presentation] Expression of life in contemporary biomedia art : an alternative 'synthetic' approach2010

    • Author(s)
      岩崎秀雄
    • Organizer
      UK-Japan Synthetic Biology Workshop
    • Place of Presentation
      イギリス大使館
    • Related Report
      2010 Final Research Report
  • [Presentation] Circadian transcription in the dark without cyclic kai gene expression II : Damped oscillation in expression of a dark-induced gene.2010

    • Author(s)
      T.Hatakeyama, N.Hosokawa, H.Iwasaki
    • Organizer
      Society for Research on Biological Rhythms (SRBR)
    • Place of Presentation
      アメリカ合衆国,フロリダ
    • Related Report
      2010 Annual Research Report
  • [Presentation] Circadian transcription in the dark without cyclic kai gene expression I : Clock-gating of dark-induced transcription in Synechococcus2010

    • Author(s)
      N.Hosokawa, T.Hatakeyama, H.Iwasaki
    • Organizer
      Society for Research on Biological Rhythms (SRBR)
    • Place of Presentation
      アメリカ合衆国,フロリダ
    • Related Report
      2010 Annual Research Report
  • [Presentation] Global circadian transcription rhythms without robust kai-gene cycling in the heterocyst-forming multicellular cyanobacterium, Anabaena sp.PCC 71202010

    • Author(s)
      H.Kushige, M.Matsuoka, H.Kugenuma, H.Iwasaki
    • Organizer
      Society for Research on Biological Rhythms (SRBR)
    • Place of Presentation
      アメリカ合衆国,フロリダ
    • Related Report
      2010 Annual Research Report
  • [Presentation] 原核生物の光周的遺伝子発現誘導の発見:kai 遺伝子の転写翻訳フィードバックを欠く暗期中でのシアノバクテリアの概日転写制御2009

    • Author(s)
      細川徳宗, 畠山哲央, 岩崎秀雄
    • Organizer
      日本時間生物学会
    • Place of Presentation
      大阪
    • Year and Date
      2009-10-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] 多細胞性シアノバクテリア Anabaena sp.PCC 7120における概日リズム2009

    • Author(s)
      櫛笥博子, 久下沼正之, 松岡正城, 岩崎秀雄
    • Organizer
      日本時間生物学会
    • Place of Presentation
      大阪
    • Year and Date
      2009-10-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] Photoperiodic gene expression in cyanobacteria : circadian gene expression in the dark without transcriptional feedback of kai genes2009

    • Author(s)
      岩崎秀雄
    • Organizer
      日本生化学会
    • Place of Presentation
      シンポジウム(神戸)
    • Year and Date
      2009-10-22
    • Related Report
      2010 Final Research Report
  • [Presentation] Photoperiodic gene expression in cyanobacteria : circadian gene expression in the dark without transcriptional feedback of kai genes2009

    • Author(s)
      岩崎秀雄
    • Organizer
      日本生化学会シンポジウム
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] シアノバクテリアの概日転写リズムに関する新知見2009

    • Author(s)
      岩崎秀雄
    • Organizer
      ラン藻ゲノム研究会
    • Year and Date
      2009-07-04
    • Related Report
      2010 Final Research Report
  • [Presentation] シアノバクテリアの概日転写リズムに関する新知見2009

    • Author(s)
      岩崎秀雄
    • Organizer
      藍藻ゲノム研究会
    • Place of Presentation
      東京大学
    • Year and Date
      2009-07-04
    • Related Report
      2009 Annual Research Report
  • [Presentation] 体内時計から細胞創成へ?:構成生物学の社会・文化的含意について2009

    • Author(s)
      岩崎秀雄
    • Organizer
      日本時間学会創立シンポジウム
    • Place of Presentation
      山口大学
    • Year and Date
      2009-06-13
    • Related Report
      2010 Final Research Report
  • [Presentation] 体内時計から細胞創成へ?:構成生物学の社会・文化的含意について2009

    • Author(s)
      岩崎秀雄
    • Organizer
      日本時間学会
    • Place of Presentation
      山口大学
    • Year and Date
      2009-06-13
    • Related Report
      2009 Annual Research Report
  • [Presentation] マイクロ流体デバイスを使用した多細胞性シアノバクテリアのパターン形成の観察2009

    • Author(s)
      石原潤一, 川合健太郎, 庄子習一, 岩崎秀雄
    • Organizer
      日本発生生物学会
    • Place of Presentation
      新潟
    • Year and Date
      2009-05-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] バイオリズム・ブームとは何だったのか:生命リズムの科学・文化誌2009

    • Author(s)
      岩崎秀雄
    • Organizer
      科学言説研究会
    • Place of Presentation
      工学院大学
    • Year and Date
      2009-02-14
    • Related Report
      2010 Final Research Report
  • [Presentation] 生命リズムのメタファーとイメジャリー2009

    • Author(s)
      岩崎秀雄
    • Organizer
      リズム現象の研究会IV
    • Place of Presentation
      お茶の水女子大学
    • Year and Date
      2009-01-23
    • Related Report
      2010 Final Research Report
  • [Presentation] 生命リズムのメタファーとイメジヤリー2009

    • Author(s)
      岩崎秀雄
    • Organizer
      リズム現象の研究会IV
    • Place of Presentation
      お茶の水女子大学
    • Related Report
      2008 Annual Research Report
  • [Presentation] 単細胞性シアノバクテリアSynechococcus elongatusにおける暗誘導遺伝子群の解析2009

    • Author(s)
      畠山哲央, 細川徳宗, 岩崎秀雄
    • Organizer
      ゲノム微生物学会
    • Place of Presentation
      中央大学
    • Related Report
      2008 Annual Research Report
  • [Presentation] Systems and synthetic analysis toward understanding spatio-temporal pattern formations in cyanobacteria2008

    • Author(s)
      岩崎秀雄
    • Organizer
      Japan-France Plant Science Workshop
    • Place of Presentation
      Tsukuba
    • Year and Date
      2008-10-22
    • Related Report
      2010 Final Research Report
  • [Presentation] 環境適応に関わる周期的時空間パターンダイナミクス:シアノバクテリアを用いて2008

    • Author(s)
      岩崎秀雄
    • Organizer
      川村浩先生本間アショフ賞受賞記念シンポジウム
    • Place of Presentation
      三菱生命科学研究所
    • Year and Date
      2008-04-18
    • Related Report
      2010 Final Research Report
  • [Presentation] Spatio-temporal pattern formations in cyanobacteria2008

    • Author(s)
      岩崎秀雄
    • Organizer
      上原記念生命科学財団シンポジウム
    • Place of Presentation
      東京
    • Related Report
      2010 Final Research Report
  • [Presentation] Systems Analyses on Cyanobacterial Spatio-Temporal Pattern Formations and Responses to Light-Dark Cycles2008

    • Author(s)
      岩崎秀雄
    • Organizer
      AESF-EMBO Symposium
    • Place of Presentation
      (スペイン)招待講演を行った
    • Related Report
      2010 Final Research Report
  • [Presentation] Spatio-temporal pattern formations in cyanobaoteria2008

    • Author(s)
      Hideo Iwasaki
    • Organizer
      上原記念生命科学財団シンポジウム
    • Place of Presentation
      東京
    • Related Report
      2008 Annual Research Report
  • [Presentation] 多細胞性シアノバクテリアにおける空間パターン形成の解析2008

    • Author(s)
      岩森俊介, 浅井宏啓, 川合健太郎, 石原潤一, 庄子習一, 岩崎秀雄
    • Organizer
      「細胞を創る」研究会1.0
    • Place of Presentation
      大阪大学
    • Related Report
      2008 Annual Research Report
  • [Presentation] シアノバクテリアの概日システムに関わる構成生物学的アプローチ2008

    • Author(s)
      唐牛恵理, 小部泰一郎, 青野大輔, 枝村一沙, 岩崎秀雄
    • Organizer
      「細胞を創る」研究会1.0
    • Place of Presentation
      大阪大学
    • Related Report
      2008 Annual Research Report
  • [Presentation] Systems and synthetic analysis toward understanding spatio-temporal pattern formations in cyanobacteria2008

    • Author(s)
      Hideo Iwasaki
    • Organizer
      日仏植物科学ワークショップ2008 “Genome-Wide Omics Analysis in Plant Sciences"
    • Place of Presentation
      筑波大学
    • Related Report
      2008 Annual Research Report
  • [Presentation] 暗期におけるシアノバクテリアの遺伝子発現制御解析2008

    • Author(s)
      細川徳宗一菊池欣之, 畠山哲央, 岩崎秀雄
    • Organizer
      日本時間生物学会
    • Place of Presentation
      岡山大学
    • Related Report
      2008 Annual Research Report
  • [Presentation] Anabaena sp. PCC 7120 における時計制御機構の解析2008

    • Author(s)
      松岡正城, 櫛笥博子, 岩崎秀雄
    • Organizer
      日本時間生物学会
    • Place of Presentation
      岡山大学
    • Related Report
      2008 Annual Research Report
  • [Book] Systems Biology : The Challenge of Complexity (Eds. Nakanishi S., Kageyama R.,Watanabe D)(A posttranslational chemical circadian oscillator in cyanobacteria)2009

    • Author(s)
      Iwasaki H
    • Publisher
      Springer
    • Related Report
      2010 Final Research Report
  • [Book] Bacterial Circadian Programs (Eds. J. Ditty, S. Mackey, C.H. Johnson)(Factors involved in transcriptional output from the Kai-protein-based circadian oscillator)2009

    • Author(s)
      Iwasaki H
    • Publisher
      Springer
    • Related Report
      2010 Final Research Report
  • [Book] Systems Biology : The Challenge of Complexity(chapter : "A posttranslational chemical circadian oscillator in cyanobacteria")2009

    • Author(s)
      H.Iwasaki(Eds.Nakanishi, S., Kageyama, R., Watanabe, D)
    • Total Pages
      246
    • Publisher
      Springer
    • Related Report
      2009 Annual Research Report
  • [Book] Bacterial Circadian Programs2009

    • Author(s)
      H.Iwasaki(Eds.J.Ditty, S.Mackey, C.H.Johnson)
    • Total Pages
      300
    • Publisher
      Springer
    • Related Report
      2009 Annual Research Report
  • [Remarks] ホームページ等

    • Related Report
      2010 Final Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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