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Devising a multiplex DNA typing system to identify the third-degree kinship

Research Project

Project/Area Number 20390195
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Legal medicine
Research InstitutionKyoto University

Principal Investigator

TAMAKI Kenji  Kyoto University, 医学研究科, 教授 (90217175)

Co-Investigator(Kenkyū-buntansha) YAMAMOTO Toshimichi  名古屋大学, 医学系研究科, 准教授 (50260592)
Co-Investigator(Renkei-kenkyūsha) TSURUYAMA Tatsuki  京都大学, 医学研究科, 准教授 (00303842)
IINO Morio  大阪大学, 医学系研究科, 助教 (80362466)
OKUNO Tomoko  京都大学, 医学研究科, 助教 (30288386)
Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2010: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2009: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2008: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
KeywordsDNA多型医学 / 親子鑑定 / ミニサテライト / 第3度血縁 / MVR-PCR
Research Abstract

Arriving at a conclusion that two individuals are third degree relatives (e.g. cousin) via DNA analysis is a difficult task as the purported individuals have only a 25% chance of sharing common alleles at any given locus. In order to increase the certainty of the relationship, experts often resort to hypervariable minisatellite loci because a pair of individuals can demonstrate high likelihood ratios (LRs) in the event that they share rare alleles. We firstly investigated the comparison of allele structures in Thai, Han Chinese, and Japanese populations. The great majority of alignable Asian alleles showed their closest structural relative in Asia. This rapidly evolving minisatellite can therefore serve as a lineage marker for exploring recent events in human population history and dissecting population structure at the fine-scale level, as well as being an extremely informative DNA marker for personal identification. we then examined third degree relatives from two groups of siblings … More using two hypervariable minisatellite loci. Relationships were not established because no alleles were shared between the two groups ; albeit sharing of alleles within each group was noted in moderation. We also estimated the distribution of LRs in a variety of kinships (parent-child, siblings, two s! iblings etc.) using a commercially available typing kit which simultaneously amplifies 15 STR loci. Although the STR system is extremely useful in establishing individual identification when both parents, or two or more children (or siblings) are available for comparison it is highly unlikely that the system will be effective in third degree kinship analyses. This postulation is based on our study of samples obtained from known third degree relatives in which we attempted a microsatellite-based approach to establishing kinship. However, unfortunately with microsatellites alone the calculated LR was less than 1, which is insufficient for positive identification. Consequently, a more effective method such that estimates the proportion of chromosomal sharing would be more advantageous in comparison to attempting to demonstrate allelic hypervariability at several loci. To date we have analyzed 382 dinucleotide loci distributed throughout the human genome in order to estimate the length proportion of shared haplotypes between two individuals in varying modes of kinship. The initial data we have obtained is promising and is currently being carefully analyzed. Less

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (10 results)

All 2011 2010 2009 2008

All Journal Article (6 results) (of which Peer Reviewed: 3 results) Presentation (4 results)

  • [Journal Article] Efficacy of extended kinship analyses utilizing commercial STR kit in establishing personal identification.2011

    • Author(s)
      Yoshida K, Tamaki, K., et al.
    • Journal Title

      Legal Med (印刷中)

    • Related Report
      2010 Final Research Report
  • [Journal Article] Efficacy of extended kinship analyses utilizing commercial STR kit in establishing personal identification.2011

    • Author(s)
      Yoshida K, etc.
    • Journal Title

      Legal Med

      Volume: (印刷中)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Minisatellite MS32 alleles show population specificity among Thai, Chinese, and Japanese.2009

    • Author(s)
      Yuan, QH, Tamaki K, et al.
    • Journal Title

      J.Mol.Evol 68

      Pages: 126-133

    • Related Report
      2010 Final Research Report
  • [Journal Article] Likelihood evaluation using 15 common short tandem repeat loci : a practical and simulated approach to establishing personal identification via sibling/parental assessments.2009

    • Author(s)
      Tamaki, K, et al.
    • Journal Title

      Transfusion 49

      Pages: 578-584

    • Related Report
      2010 Final Research Report
  • [Journal Article] Minisatellite MS32 alleles show population specificity among Thai, Chinese, and Japanese2009

    • Author(s)
      Yuan, QH, et al.
    • Journal Title

      J. Mol. Evol. 68

      Pages: 126-33

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Likelihood evaluation using 15 common short tandem repeat ioci : a practical and simulated approach to establishing personal identification via sibiing/parental assessments2009

    • Author(s)
      Tamaki, K, et al.
    • Journal Title

      Transfusion 49

      Pages: 578-84

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] 基調講演2010

    • Author(s)
      玉木敬二
    • Organizer
      ヒトDNA鑑定の現状と課題日本DNA鑑定学会第3回総会
    • Place of Presentation
      東京都港区
    • Year and Date
      2010-12-02
    • Related Report
      2010 Final Research Report
  • [Presentation] ヒトDNA鑑定の現状と課題2010

    • Author(s)
      玉木敬二
    • Organizer
      日本DNA鑑定学会第3回総会
    • Place of Presentation
      東京都港区発明会館ホール(基調講演)
    • Year and Date
      2010-12-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] 第92次日本法医学会総会2008

    • Author(s)
      玉木敬二, 他
    • Organizer
      身元確認におけるSTR15ローカスタイピングを用いた同胞検査の有用性
    • Place of Presentation
      長崎
    • Year and Date
      2008-04-24
    • Related Report
      2010 Final Research Report
  • [Presentation] 身元確認におけるSTR15ローカスタイピングを用いた同胞検査の有用性2008

    • Author(s)
      玉木敬二, 他
    • Organizer
      第92次日本法医学会総会
    • Place of Presentation
      長崎
    • Year and Date
      2008-04-24
    • Related Report
      2008 Annual Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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