• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Oscillator network modeling of SCN neurons and its application to circadian rhythm

Research Project

Project/Area Number 20560352
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Communication/Network engineering
Research InstitutionJapan Advanced Institute of Science and Technology

Principal Investigator

TOKUDA Isao  Japan Advanced Institute of Science and Technology, 情報科学研究科, 准教授 (00261389)

Co-Investigator(Kenkyū-buntansha) UKUA Hirokazu  大阪府立大学, 生命環境科学研究科, 助教 (90405358)
池口 徹  埼玉大学, 大学院・理工学研究科, 教授 (30222863)
郡 宏  お茶の水女子大学, 人間創成科学研究科, 助教 (80435974)
Co-Investigator(Renkei-kenkyūsha) IKEGUCHI Tohru  埼玉大学, 大学院・理工学研究科, 教授 (30222863)
KORI Hiroshi  お茶の水女子大学, お茶大アカデミックプロダクション, 特任助教 (80435974)
Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2010: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2009: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2008: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywords概日リズム / 結合振動子 / 時系列解析 / SCNニューロン / サーカディアンリズム / 位相方程式 / 位相応答曲線 / 時計遺伝子 / 集団フィードバック制御 / 複雑ネットワーク / 同期
Research Abstract

Towards comprehensive understanding of mammalian circadian rhythm, this project attempts to construct a mathematical model of neuronal network in the suprachiasmatic nucleus (SCN) using the recording data from physiological experiment. From the recording data of a rat SCN slice, network topology of the SCN neurons was estimated. The estimated network model was capable of reproducing the phase wave propagation, which is widely observed in the experiment. The phase wave is considered to play an important role for resolving the jet-lag problem. Next, as a preliminary experiment to control the circadian rhythm, delayed feedback technique was applied to a network of electrochemical oscillators to control the cluster states. Moreover, light pulse was injected to a plant leaf to desynchronize and resynchronize the plant circadian system.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (39 results)

All 2011 2010 2009 2008 Other

All Journal Article (24 results) (of which Peer Reviewed: 23 results) Presentation (11 results) Book (3 results) Remarks (1 results)

  • [Journal Article] Biomechanical modeling of register transitions and the role of vocal tract resonators2010

    • Author(s)
      T.Tokuda, M.Zemke, M.Kob, H.Herzel
    • Journal Title

      Journal of the Acoustical Society of America Vol.127

      Pages: 1528-1536

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Predicting the synchronization of a network of electronic repressilators2010

    • Author(s)
      I.Tokuda, A.Wagemakers, M.A.F.Sanjuan
    • Journal Title

      International Journal of Bifurcation and Chaos Vol.20

      Pages: 1751-1760

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Role of chaotic resonance in cerebellar learning2010

    • Author(s)
      T.Tokuda, C.Han, K.Aihara, M.Kawato, N.Schweighofer
    • Journal Title

      Neural Networks Vol.23

      Pages: 836-842

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] 立体内視鏡とハイスピードカメラによる声門面積関数の計測2010

    • Author(s)
      今川博, 榊原健一, 徳田功, 大塚満美子, 田山二朗
    • Journal Title

      音声研究 Vol.14, No.2

      Pages: 37-44

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Predicting the Synchronization of a Network of Electronic Repressilators2010

    • Author(s)
      I.T.Tokuda, A.Wagemakers, M.A.F.Sanjuan
    • Journal Title

      International Journal of Bifurcation and Chaos

      Volume: 20 Pages: 1751-1760

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of Chaotic Resonance in Cerebellar Learning2010

    • Author(s)
      I.T.Tokuda, C.Han, K.Aihara, M.Kawato, N.Schweighofer
    • Journal Title

      Neural Networks

      Volume: 23 Pages: 836-842

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 立体内視鏡とハイスピードカメラによる声門面積関数の計測2010

    • Author(s)
      今川博, 榊原健一, 徳田功, 大塚満美子, 田山二朗
    • Journal Title

      音声研究

      Volume: 14 Pages: 37-44

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biomechanical modeling of register transitions and the role of vocal tract resonators2010

    • Author(s)
      I.T.Tokuda, M.Zemke, M.Kob, H.Herzel
    • Journal Title

      Journal of the Acoustical Society of America 127

      Pages: 1528-1536

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] STDP学習により形成されるニューラルネットワークの複雑構造解析2009

    • Author(s)
      加藤秀行, 池口徹
    • Journal Title

      電子情報通信学会論文誌A J92

      Pages: 94-104

    • NAID

      110007384718

    • Related Report
      2010 Final Research Report 2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design principle of multi-cluster and desynchronized states in oscillatory media via nonlinear global feedback2009

    • Author(s)
      Y.Kobayashi, H.Kori
    • Journal Title

      New Journal Physics 11

      Pages: 33018-33018

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Singular behavior of slow dynamics of single excitable cells2009

    • Author(s)
      T.Harada, T.Yokogawa, T.Miyaguchi, H.Kori
    • Journal Title

      Biophysics Journal 96

      Pages: 255-267

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Design principle of multi-cluster and desynchronized states in oscillatory media via nonlinear global feedback2009

    • Author(s)
      Y. Kobayashi, H. Kori
    • Journal Title

      New Journal Physics 11

      Pages: 33018-33018

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Singular behavior of slow dynamics of single excitable cells2009

    • Author(s)
      T. Harada, T. Yokogawa, T. Miyaguchi, H. Kori
    • Journal Title

      Biophysics Journal 96

      Pages: 255-267

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of a Dark Pulse Under Continuous Red Light on the Arabidopsis thaliana Circadian Rhythm2009

    • Author(s)
      H. Fukuda. Y. Uchida, N. Nakamichi
    • Journal Title

      Environment Control in Biology 46

      Pages: 123-128

    • NAID

      10024291043

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Detecting anomalous phase synchronization from time series2008

    • Author(s)
      T.Tokuda, D.Syamal, J.Kurths
    • Journal Title

      Chaos 18

      Pages: 23134-23134

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effect of a dark pulse under continuous red light on the arabidopsis thaliana circadian rhythm2008

    • Author(s)
      H.Fukuda, Y.Uchida, N.Nakamichi
    • Journal Title

      Environment Control in Biology 46

      Pages: 123-128

    • NAID

      10024291043

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Predicting phase synchronization of non-phase-coherent chaos2008

    • Author(s)
      I.Tokuda, J.Kurths, I.Z.Kiss, J.L.Hudson
    • Journal Title

      Europhysics Letters 83

      Pages: 50003-50003

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Collective phase sensitivity2008

    • Author(s)
      Y.Kawamura, H.Nakao, K.Arai, H.Kori, Y.Kuramoto
    • Journal Title

      Physical Review Letters 101

      Pages: 24101-24101

    • NAID

      120006581910

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Synchronization Engineering : Theoretical Framework and Application to Dynamical Clustering2008

    • Author(s)
      H.Kori, C.G.Rusin, I.Z.Kiss, J.L.Hudson
    • Journal Title

      Chaos 18

      Pages: 26111-26111

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Detecting anomalous phase synchronization from time series2008

    • Author(s)
      I. T. Tokuda, D. Syamal J. Kurths
    • Journal Title

      Chaos 18

      Pages: 23134-23134

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Predicting phase synchronization of non-phase-coherent chaos2008

    • Author(s)
      I. T. Tokuda. J. Kurths, I. Z. Kiss, J. L. Hudson
    • Journal Title

      Europhysics Letters 83

      Pages: 50003-50003

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Collective Phase Sensitivity2008

    • Author(s)
      Y. Kawamura, H. Nakao, K. Arai, H. Kori, Y. Kuramoto
    • Journal Title

      Physical Review Letters 101

      Pages: 24101-24101

    • NAID

      120006581910

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synchronization Engineering : Theoretical Framework and Application to Dynamical Clustering2008

    • Author(s)
      H. Kori, C. G. Rusin, I. Z. Kiss, J. L. Hudson
    • Journal Title

      Chaos 18

      Pages: 26111-26111

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Self-organized Complex Neural Networks through Nonlinear Temporally Asymmetric Hebbian Plasticity2008

    • Author(s)
      H. Kato, T. Ikeguchi
    • Journal Title

      Lecture Notes in Computer Science 5163

      Pages: 623-631

    • Related Report
      2008 Annual Research Report
  • [Presentation] 視交叉上核におけるネットワークダイナミクスのモデル化2011

    • Author(s)
      山本雄貴, 徳田功, 福田弘和, 早坂直人
    • Organizer
      電子情報通信学会2011年総合大会
    • Place of Presentation
      東京都市大学
    • Year and Date
      2011-03-14
    • Related Report
      2010 Final Research Report
  • [Presentation] Estimation of Glottal Area Function Using Stereo-endoscopic High-Speed Digital Imaging2010

    • Author(s)
      H.Imagawa, K.-I.Sakakibara, I.T.Tokuda, M.Otsuka, N.Tayama
    • Organizer
      Interspeech
    • Place of Presentation
      幕張メッセ(千葉)
    • Year and Date
      2010-09-28
    • Related Report
      2010 Annual Research Report
  • [Presentation] Spiral waves in two-dimentional circadian oscillator networks in plant leaf2010

    • Author(s)
      福田弘和
    • Organizer
      Gordon Research Conference on Oscillations and Dynamic Instabilities In Chemical Systems
    • Place of Presentation
      Lucca, Italy
    • Year and Date
      2010-07-04
    • Related Report
      2010 Final Research Report
  • [Presentation] Spiral Waves in Two-dimensional circadian oscillator networks in plant leaf2010

    • Author(s)
      H.Fukuda
    • Organizer
      Gordon Research Conference on Oscillationsand Dynamic Instabilities In Chemical Systems
    • Place of Presentation
      Lucca, Italy
    • Year and Date
      2010-07-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] 概日時計の時空間ダイナミクスを記述する数理モデル2010

    • Author(s)
      福田弘和
    • Organizer
      第51回日本植物生理学会年会シンポジウム
    • Place of Presentation
      熊本大学
    • Year and Date
      2010-03-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] 植物の体内時計に見られる時空間ダイナミクスとその制御2010

    • Author(s)
      福田弘和
    • Organizer
      定量生物学の会第2回年会
    • Place of Presentation
      大阪大学
    • Year and Date
      2010-01-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] 哺乳類の概日時計中枢が生み出す時空間ダイナミクス2010

    • Author(s)
      早坂直人, 福田弘和
    • Organizer
      定量生物学の会第2回年会
    • Place of Presentation
      大阪大学
    • Year and Date
      2010-01-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] Extracting phase dynamics from nonstationary data2009

    • Author(s)
      徳田功
    • Organizer
      Conference on Dynamics in Systems Biology
    • Place of Presentation
      Aberdeen, UK
    • Year and Date
      2009-09-15
    • Related Report
      2010 Final Research Report
  • [Presentation] Extracting phase dynamics from nonstationary data2009

    • Author(s)
      福田弘和
    • Organizer
      Conference on Dynamics in Systems Biology
    • Place of Presentation
      Aberdeen 大学 (英国)
    • Year and Date
      2009-09-15
    • Related Report
      2009 Annual Research Report
  • [Presentation] Synchronous firings in self-organized neural network through spike-timing-dependent plasticity for periodic external inputs2009

    • Author(s)
      H. Kato, T. Ikeguchi
    • Organizer
      Proceedings of the International Workshop on Nonlinear Circuits and Signal Processing
    • Place of Presentation
      Hawaii, USA
    • Year and Date
      2009-03-01
    • Related Report
      2008 Annual Research Report
  • [Presentation] Effect of periodic external inputs for neural network structures and dynamics through the STDP2008

    • Author(s)
      H. Kato, T. Ikeguchi
    • Organizer
      Proceedings of the International Workshop on Vision, Communications and Circuits
    • Place of Presentation
      Xi'an, China
    • Year and Date
      2008-11-01
    • Related Report
      2008 Annual Research Report
  • [Book] 同期理論の基礎と応用(徳田功(訳))2009

    • Author(s)
      アルカディ・ピコフスキー、ミヒャエル・ローゼンブラム、ユルゲン・クルツ(著)
    • Publisher
      丸善
    • Related Report
      2010 Final Research Report
  • [Book] 「同期理論の基礎と応用」、2009年2009

    • Author(s)
      アルカディ・ピコフスキー, ミヒャエル・ローゼンブラム, ユルゲン・クルツ(著), 徳田功(訳)
    • Total Pages
      427
    • Publisher
      丸善
    • Related Report
      2009 Annual Research Report
  • [Book] Applications of Nonlinear Dynamics Model and Design of Complex Systems (Understanding Complex Systems Series)2009

    • Author(s)
      H. Kato, T. Kimura, T. Ikeguchi
    • Publisher
      Springer Berlin / Heidelberg
    • Related Report
      2008 Annual Research Report
  • [Remarks] ホームページ等

    • Related Report
      2010 Final Research Report

URL: 

Published: 2008-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi