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Investigation of the mechanism by which novel phosphorylated RNA polymerase II-interacting factors coordinate processes required for gene expression

Research Project

Project/Area Number 20570162
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionUniversity of Toyama

Principal Investigator

HIROSE Yutaka  University of Toyama, 大学院・医学薬学研究部(薬学), 准教授 (00218851)

Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2010: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2009: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2008: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords遺伝子発現調節 / 転写 / RNAポリメラーゼII / リン酸化 / WWドメイン / 遺伝子発現 / RNAプロセシン / PCIF1 / Pin1 / RNAプロセシング / 遺伝情報発現調節
Research Abstract

RNA polymerase II (Pol II) copies genetic information from DNA to RNA. The carboxy-terminal domain (CTD) of Pol II is subjected to reversible phosphorylation during transcription cycle and plays an important role in gene expression. Recently, I identified a novel human protein PCIF1 as a phosphorylated CTD-interacting protein. In this study, I investigated PCIF1's function in gene expression. My data suggests that PCIF1 binds Pol II at promoter region during early phase of transcription cycle and modulates phosphorylation level of the CTD.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (49 results)

All 2011 2010 2009 2008

All Journal Article (14 results) (of which Peer Reviewed: 10 results) Presentation (35 results)

  • [Journal Article] A HIRA Complex Subunit Hip3 Plays an Important Role for Silencing of Meiosis-specific Genes in Schizosaccharomyces pombe2011

    • Author(s)
      Mizuki F, Tanaka A, Hirose Y, Ohkuma Y
    • Journal Title

      PLos One Vol.6, No.4

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Enhancing recombinant protein production in human cell lines with a constitutive transport element and mRNA export proteins2011

    • Author(s)
      Aihara Y, Fujiwara N, Yamazaki T, Kambe T, Nagao M, Hirose Y, Masuda S
    • Journal Title

      J Biotechnol. 153

    • NAID

      120003072129

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Enhancing recombinant protein production in human cell lines with a constitutive transport element and mRNA export proteins.2011

    • Author(s)
      Aihara Y.
    • Journal Title

      J Biotechnol.

      Volume: (in press,in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A HIRA Complex Subunit Hip3 Plays an Important Role for Silencing of Meiosis-specific Genes in Schizosaccharomyces pornbe2011

    • Author(s)
      Mizuki F.
    • Journal Title

      PLos One

      Volume: (in press,in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNAポリメラーゼII-CTDリン酸化制御による遺伝子発現過程の協調機構2010

    • Author(s)
      広瀬豊
    • Journal Title

      生化学 82巻、3号

      Pages: 221-231

    • Related Report
      2010 Final Research Report
  • [Journal Article] RNAポリメラーゼII-CTDリン酸化制御による遺伝子発現過程の協調機構2010

    • Author(s)
      広瀬豊
    • Journal Title

      生化学

      Volume: 82 Pages: 221-231

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Prolyl isomerase Pinl shares functional similarity with phosphorylated CTD interacting factor PCIF1 in vertebrate cells.2009

    • Author(s)
      Yunokuchi I, Fan H, Iwamoto Y, Araki C, Yuda M, Umemura H, Harada F, Ohkuma Y, Hirose Y
    • Journal Title

      Genes Cells 14

      Pages: 1105-1118

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] RNAポリメラーゼII-CTDリン酸化制御による転写とmRNAプロセシングの共役2009

    • Author(s)
      広瀬豊
    • Journal Title

      蛋白質・核酸・酵素 54巻

      Pages: 2080-2085

    • Related Report
      2010 Final Research Report
  • [Journal Article] Prolyl isomerase Pin1 shares functional similarity with phosphorylated CTD interacting factor PCIF1 in vertebrate cells2009

    • Author(s)
      Yunokuchi I.
    • Journal Title

      Genes to Cells 14

      Pages: 1105-1118

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNAポリメラーゼII-CTDリン酸化制御による転写とmRNAプロセシングの共役2009

    • Author(s)
      広瀬豊
    • Journal Title

      蛋白質・核酸・酵素 54

      Pages: 2080-2085

    • Related Report
      2009 Annual Research Report
  • [Journal Article] Human mediator kinase subunit CDK11 plays a negative role in viral activator VP16-dependent transcriptional regulation.2008

    • Author(s)
      Tsutsui T, Umemura H, Tanaka A, Mizuki F, Hirose Y, Ohkuma Y
    • Journal Title

      Genes Cells 13

      Pages: 817-826

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Human phosphorylated CTD-interacting protein, PCIF1, negatively modulates gene expression by RNA polymerase II.2008

    • Author(s)
      Hirose Y, Iwamoto Y, Sakuraba K, Yunokuchi I, Harada F, Ohkuma Y
    • Journal Title

      Biochem. Biophys. Res.Commun 369

      Pages: 449-455

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mouse nucleolin binds to 4.5S RNA_H, a small noncoding RNA.2008

    • Author(s)
      Hirose Y, Harada F
    • Journal Title

      Biochem. Biophys. Res.Commun 365

      Pages: 62-68

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Human phosphorylated CTD-interacting protein, PCIF1, negatively modulates gene expression by RNA polymerase II2008

    • Author(s)
      Hirose, Y.
    • Journal Title

      Biochem. Biophys. Res. Comm. 369

      Pages: 449-455

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] メディエーター複合体サブユニットの転写制御における機能解析2010

    • Author(s)
      西谷紗織
    • Organizer
      日本薬学会北陸支部第122回例会
    • Place of Presentation
      金沢
    • Year and Date
      2010-10-22
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] 脊椎動物CTDフォスファターゼSsu72の機能解析2010

    • Author(s)
      和仁翔太郎
    • Organizer
      第33回日本分子生物学会・第83回日本生化学会合同年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] リン酸RNAポリメラーゼII結合蛋白質PCIF1の機能解析2010

    • Author(s)
      石黒尋保
    • Organizer
      第33回日本分子生物学会・第83回日本生化学会合同年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Final Research Report
  • [Presentation] WWOXとmRNA前駆体ポリ(A)付加因子の相互作用2010

    • Author(s)
      熊野御堂悠
    • Organizer
      第33回日本分子生物学会・第83回日本生化学会合同年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] メディエーター複合体の2種のキナーゼサブユニットによる転写活性化と抑制という正反対の機能2010

    • Author(s)
      大熊芳明
    • Organizer
      第33回日本分子生物学会・第83回日本生化学会合同年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] 脊椎動物リン酸化RNAポリメラーゼII結合因子PCIF1の機能解析2010

    • Author(s)
      広瀬豊
    • Organizer
      第32回生体膜と薬物の相互作用シンポジウム
    • Place of Presentation
      富山大学
    • Related Report
      2010 Final Research Report
  • [Presentation] ヒト癌細胞における選択的ポリ(A)付加制御の分子機構2010

    • Author(s)
      熊野御堂悠
    • Organizer
      第12回日本RNA学会年会
    • Place of Presentation
      東京
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] 脊椎動物CTDフォスファターゼSsu72の機能解析2010

    • Author(s)
      和仁翔太郎
    • Organizer
      第12回日本RNA学会年会
    • Place of Presentation
      東京
    • Related Report
      2010 Final Research Report
  • [Presentation] 脊椎動物CTDフォスファターゼSsu72の機能解析2010

    • Author(s)
      和仁翔太郎
    • Organizer
      第12回日本RNA学会岸会
    • Place of Presentation
      東京
    • Related Report
      2010 Annual Research Report
  • [Presentation] 脊椎動物リン酸化RNAポリメラーゼII結合因子PCIFIの機能解析2010

    • Author(s)
      広瀬豊
    • Organizer
      第32回生体膜と薬物の相互作用シンポジウム
    • Place of Presentation
      富山
    • Related Report
      2010 Annual Research Report
  • [Presentation] リン酸RNAポリメラーゼII結合蛋白質PCIFIの機能解析2010

    • Author(s)
      石黒尋保
    • Organizer
      第33回日本分子生物学会・第83回日本生化学会合同年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Annual Research Report
  • [Presentation] ヒトPin1およびWWOXの新規核内標的因子の探索2009

    • Author(s)
      熊野御堂悠
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] ニワトリDT40細胞株を用いたリン酸化CTD結合蛋白質PCIF1の機能解析2009

    • Author(s)
      長田愛乃
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] リン酸化RNAポリメラーゼII結合蛋白質PCIF1の機能解析2009

    • Author(s)
      岩本悠
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] 脊椎動物CTDフォスファターゼSsu72の遺伝子発現制御における機能2009

    • Author(s)
      広瀬豊
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] 脊椎動物CTDフォスファターゼSsu72の遺伝子発現制御における機能2009

    • Author(s)
      和仁翔太郎
    • Organizer
      第82回日本生化学学会大会
    • Place of Presentation
      神戸
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] ニワトリDT40細胞株を用いたリン酸化CTD結合蛋白質PCIF1の機能解析2009

    • Author(s)
      長田愛乃
    • Organizer
      第11回日本RNA学会年会
    • Place of Presentation
      新潟
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] リン酸化RNAポリメラーゼII結合蛋白質PCIF1の機能解析2009

    • Author(s)
      岩本悠
    • Organizer
      第11回日本RNA学会年会
    • Place of Presentation
      新潟
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] CTDフォスファターゼSsu72の遺伝子発現制御における機能2009

    • Author(s)
      広瀬豊
    • Organizer
      第11回日本RNA学会年会
    • Place of Presentation
      新潟
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] リン酸化RNAポリメラーゼII結合蛋白質PCIF1の機能解析2009

    • Author(s)
      岩本悠
    • Organizer
      遺伝情報DECODE・冬のワークショップ
    • Place of Presentation
      越後湯沢
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] 脊椎動物リン酸化RNAポリメラーゼII制御因子の機能解析2009

    • Author(s)
      広瀬豊
    • Organizer
      遺伝情報DECODE・冬のワークショップ
    • Place of Presentation
      越後湯沢
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] Functional characterization of the vertebrate phosphorylated CTD-interacting protein PCIF12009

    • Author(s)
      広瀬豊
    • Organizer
      11th Cold Spring Harbor Meeting on Mechanisms of Eukaryotic Transcription
    • Place of Presentation
      Cold Spring Harbor(NY)
    • Related Report
      2010 Final Research Report
  • [Presentation] Functional characterization of the vertebrate phosphorylated CTD-interacting protein PCIF1.2009

    • Author(s)
      Hirose Y.
    • Organizer
      11th Cold Spring Harbor Meeting on Mechanisms of Eukaryotic Transcription
    • Place of Presentation
      Cold Spring Harbor(NY)
    • Related Report
      2009 Annual Research Report
  • [Presentation] リン酸化RNAポリメラーゼII結合蛋白質PCIF1の機能解析2008

    • Author(s)
      岩本悠
    • Organizer
      第31回日本分子生物学会・第81回日本生化学会合同年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Final Research Report
  • [Presentation] ニワトリDT40細胞株を用いたリン酸化CTD結合蛋白質PCIF1の機能解析2008

    • Author(s)
      長田愛乃
    • Organizer
      第31回日本分子生物学会・第81回日本生化学会合同年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Final Research Report
  • [Presentation] 脊椎動物CTD脱リン酸化酵素Ssu72の遺伝子発現制御における機能解析2008

    • Author(s)
      山本真也
    • Organizer
      第31回日本分子生物学会・第81回日本生化学会合同年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Final Research Report
  • [Presentation] Opposite functions in transcriptional activation by two kinase subunits of Mediator complexes2008

    • Author(s)
      Ohkuma Y
    • Organizer
      第31回日本分子生物学会・第81回日本生化学会合同年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Final Research Report
  • [Presentation] メディエーター複合体サブユニットhMed18の機能解析2008

    • Author(s)
      梅村啓靖
    • Organizer
      第31回日本分子生物学会・第81回日本生化学会合同年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Final Research Report
  • [Presentation] 転写制御におけるメディエーター複合体サブユニットMED15の機能解析2008

    • Author(s)
      中坪拓也
    • Organizer
      第31回日本分子生物学会・第81回日本生化学会合同年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Final Research Report
  • [Presentation] ヒト転写抑制型コファクター・Gdown1の機能解析2008

    • Author(s)
      大湊愛
    • Organizer
      第31回日本分子生物学会・第81回日本生化学会合同年会
    • Place of Presentation
      神戸
    • Related Report
      2010 Final Research Report
  • [Presentation] Functional study of novel Mediator kinase subunit CDK11 in transcriptional regulation2008

    • Author(s)
      Tsutsui T
    • Organizer
      The 21st Naito Conference on Nuclear Dynamics and RNA
    • Place of Presentation
      長野
    • Related Report
      2010 Final Research Report
  • [Presentation] リン酸化RNAポリメラーゼII結合蛋白質PCIF1の機能解析2008

    • Author(s)
      岩本悠
    • Organizer
      第10回日本RNA学会年会
    • Place of Presentation
      札幌
    • Related Report
      2010 Final Research Report 2008 Annual Research Report
  • [Presentation] 脊椎動物CTD脱リン酸化酵素Ssu72の遺伝子発現制御における機能2008

    • Author(s)
      山本真也
    • Organizer
      第10回日本RNA学会年会
    • Place of Presentation
      札幌
    • Related Report
      2010 Final Research Report
  • [Presentation] リン酸化RNAポリメラーゼII結合蛋白質PCIF1の機能解析2008

    • Author(s)
      岩本悠
    • Organizer
      第81回日本生化学学会大会、合同大会
    • Place of Presentation
      神戸
    • Related Report
      2008 Annual Research Report
  • [Presentation] ニワトリDT40細胞株を用いたリン酸化CTD結合蛋白質PCIF1の機能解析2008

    • Author(s)
      長田愛乃
    • Organizer
      第81回日本生化学学会大会、合同大会
    • Place of Presentation
      神戸
    • Related Report
      2008 Annual Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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