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Positive and negative factors responsible for inter-domain DNA transfer between bacteria and yeasts

Research Project

Project/Area Number 20570221
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Evolutionary biology
Research InstitutionHiroshima University

Principal Investigator

SUZUKI Katsunori  広島大学, 大学院・理学研究科, 教授 (50221320)

Co-Investigator(Kenkyū-buntansha) 守口 和基  広島大学, 大学院・理学研究科, 講師 (30294523)
田中 克幸  広島大学, 大学院・理学研究科, 助教 (10363045)
Co-Investigator(Renkei-kenkyūsha) MORIGUCHI Kazuki  広島大学, 大学院・理学研究科, 講師 (30294523)
Research Collaborator TANAKA Katsuyuki  株式会社建設環境研究所 (10363045)
Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2010: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2009: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2008: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords水平遺伝子伝達 / 生物界間接合 / T-DNA輸送 / 細菌 / アグロバクテリア / 酵母 / 真核生物 / 接合遺伝子 / vir遺伝子
Research Abstract

Agrobacterial T-DNA transfer and Trans-kingdom conjugation from Gram-negative bacteria to yeasts are interesting phenomena in that bacteria actively transfer DNA horizontally to eukaryotes. This study with a yeast as a model eukaryotic recipient revealed that yeast genes mainly for vATPase subunits are important for Trans-kingdom conjugation, and that yeast genes including RAD2 and SRS2 are important for the agrobacteria-mediated transformation. Each of the genes is likely to function in a process which had been specialized between the two phenomena. This study also developed useful tools for accurate but easy modification on huge-size plasmids and enabled highly efficient but easy transformation.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (44 results)

All 2012 2011 2010 2009 2008

All Journal Article (13 results) (of which Peer Reviewed: 13 results) Presentation (27 results) Book (2 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Development of a reinforced Ti-evictionplasmid useful for construction of Tiplasmid-free Agrobacterium strains.2012

    • Author(s)
      S. Yamamoto, K. Suzuki
    • Journal Title

      J. Microbiol. Meth

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Yeasttrans for mation mediated by Agrobacteriumstrains harboring an Ri plasmid : comparativestudy between GALLS of an Ri plasmid andvirE of a Ti plasmid.2012

    • Author(s)
      K. Kiyokawa, S. Yamamoto, Y. Sato, N. Momota, K. Tanaka, K. Moriguchi and K. Suzuki
    • Journal Title

      Genes Cells

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Screening foryeast mutants defective in recipient ability for transkingdom conjugation with Escherichia colirevealed importance of vacuolar ATPase activityin the horizontal DNA transfer phenomenon.2011

    • Author(s)
      M. Mizuta, E. Satoh, C. Katoh, K. Tanaka, K. Moriguchi, K. Suzuki
    • Journal Title

      Microbiol Res.

      Pages: 1-6

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Screening for yeast mutants defective in recipient ability for transkingdom conjugation with Escherichia coli revealed importance of vacuolar ATP ase activity in the horizontal DNA transfer phenomenon2011

    • Author(s)
      M.Mizuta, E.Satoh, C.Katoh, K.Tanaka, K.Moriguchi, K.Suzuki
    • Journal Title

      Microbiol Res.doi : 10.1016/j.micres.2011.10.001

      Pages: 1-6

    • NAID

      120006551781

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] transferable between Escherichia coli andAgrobacterium species.2009

    • Author(s)
      K. Kiyokawa, S. Yamamoto, K. Sakuma, K. Tanaka, K. Moriguchi, and K. Suzuki
    • Journal Title

      Appl. Environ. Microbiol.

      Volume: 75 Pages: 1845-1851

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Noveltoxin-antitoxin system composed of serineprotease and AAA-ATPase homologuesdetermines the high stability andincompatibility of the tumor-inducing plasmidpTiC58.2009

    • Author(s)
      Yamamoto, S., Kiyokawa, K., Tanaka, K., Moriguchi, K, , Suzuki, K.
    • Journal Title

      J. Bacteriol.

      Volume: 191 Pages: 4656-4666

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Variation of 16S-23S internally transcribed spacer sequenceand intervening sequence in rDNA among the three major Agrobacterium species. Microbiol.2009

    • Author(s)
      J. Bautista-Zapanta, H. H. Arafat, K. Tanaka, H. Sawada, K. Suzuki
    • Journal Title

      Res

      Volume: 164 Pages: 604-612

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] A bility of Agrobacteriumtumefaciens and A. rhizogenes strains2009

    • Author(s)
      K. Tanaka, H. H. Arafat, H. Urbanczyk, S. Yamamoto, K. Moriguchi, H. Sawada, and K. Suzuki
    • Journal Title

      inability of A. vitis and A. rubi strains to adapt tosalt-insufficient environment, and taxonomicsignificance of a simple salt requirement test inthe pathogenic Agrobacterium speciesJ. Gen. Appl. Microbiol.

      Volume: 55 Pages: 35-41

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Novel toxin-antitoxin system composed of serine protease and AAA-AT Pase homologues determines the high stability and incompatibility of the tumor-inducing plasmid pTiC582009

    • Author(s)
      S.Yamamoto, K.Kiyokawa, K.Tanaka, K.Moriguchi, K.Suzuki
    • Journal Title

      J.Bacteriol 191

      Pages: 4656-4666

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Variation of 16S-23S internally transcribed spacer sequence and interve ning sequence in rDNA among the three major Agrobacterium species2009

    • Author(s)
      J.Bautista-Zapanta, H.H.Araf at, K.Tanaka, H.Sawada, K.Suzuki
    • Journal Title

      Microbiol.Res 164

      Pages: 604-612

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Construction of disarmed Ti plasmids transferable between Escherichia coli and Agrobacterium species2009

    • Author(s)
      K. Kiyokawa, S. Yamamoto, K. Sakuma, K. Tanaka, K. Moriguchi, K. Suzuki
    • Journal Title

      Appl. Environ. Microbiol. 75

      Pages: 1845-1851

    • NAID

      120001700428

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ability of Agrobacterium tumefaciens and A. rhizogenes strains, inability of A. vitis and A. rubi strains to adapt to salt-insufficient environment, and taxonomic significance of a simple salt requirement test in the pathogenic Agrobacterium species2009

    • Author(s)
      K. ranaka, H. H. Arafat, H. Urbanczyk, S. Yamamoto, K. Moriguchi, H. Sawada, K. Suzuki
    • Journal Title

      J. Gen. Appl. Microbiol. 55

      Pages: 35-41

    • NAID

      130004802121

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Variation of lipopolysaccharide among the three major Agrobacterium species and the effect of environmental stress on the lipopolysaccharide profile2009

    • Author(s)
      H. H. Arafat, K. Tanaka, H. Sawada, K. Suzuki
    • Journal Title

      Plant Pathol. J. 8

      Pages: 1-8

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] IV型分泌系を応用した新規遺伝子導入法の確立2012

    • Author(s)
      守口和基, 枝廣憲孝池ヶ谷洋佑白木田中克幸、倉田のり、鈴木克周
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2010 Final Research Report
  • [Presentation] Yeasttrans for mation mediated by Agrobacteriumstrains harboring an Ri plasmid.2011

    • Author(s)
      K. Kiyokawa, S. Yamamoto, K. Tanaka, K. Moriguchi, K. Suzuki
    • Organizer
      32nd International Crown Gall Conference
    • Place of Presentation
      HiltonGarden Inn, Middleton, Wisconsin, USA
    • Year and Date
      2011-10-29
    • Related Report
      2010 Final Research Report
  • [Presentation] Stabilityenhancing genes of Ti plasmids and itsapplication.2011

    • Author(s)
      S. Yamamoto, K. Kiyokawa, K. Tanaka, K. Moriguchi, K. Suzuki
    • Organizer
      32nd International Crown Gall Conference
    • Place of Presentation
      Hilton Garden Inn, Middleton, Wisconsin, USA
    • Year and Date
      2011-10-29
    • Related Report
      2010 Final Research Report
  • [Presentation] Yeast transformation mediated by Agrobacterium strains harboring an Riplasmid2011

    • Author(s)
      K.Kiyokawa, S.Yamamoto, K.Tanaka, K.Moriguchi, K.Suzuki
    • Organizer
      32nd International Crown Gall Conference
    • Place of Presentation
      Hilton Garden Inn (Middleton, Wisconsin, USA)
    • Year and Date
      2011-10-29
    • Related Report
      2010 Annual Research Report
  • [Presentation] Stability enhancing genes of Ti plasmids and its application2011

    • Author(s)
      S.Yamamoto, K.Kiyokawa, K.Tanaka, K.Moriguchi, K.Suzuki
    • Organizer
      32nd International Crown Gall Conference
    • Place of Presentation
      Hilton Garden Inn (Middleton, Wisconsin, USA)(招待講演)
    • Year and Date
      2011-10-29
    • Related Report
      2010 Annual Research Report
  • [Presentation] Riプラスミドをもつアグロバクテリア株の出芽酵母に対する低形質転換能の解析2011

    • Author(s)
      清川一矢、山本真司、佐藤由香里、田中克幸、守口和基、鈴木克周
    • Organizer
      日本植物学会中四国支部香川大会
    • Place of Presentation
      香川大学
    • Related Report
      2010 Final Research Report
  • [Presentation] Riプラスミドをもつアグロバクテリア株の出芽酵母に対する低形質転換能の解析2011

    • Author(s)
      清川一矢、山本真司、佐藤由香里、田中克幸、守口和基、鈴木克周
    • Organizer
      生物系三学会中四国支部香川大会
    • Place of Presentation
      香川大学幸町キャンパス
    • Related Report
      2010 Annual Research Report
  • [Presentation] Diversity among strains inAgrobacterium species.2010

    • Author(s)
      S. Yamamoto, K. Tanaka, H. H. Arafat, J. Bautista-Zapanta, H. Urbanczyk, K. Suzuki
    • Organizer
      ISBDS2010International Symposium of BiodiversitySciences" Genome, Evolution and Environment
    • Place of Presentation
      名古屋市ルブラ王山
    • Year and Date
      2010-08-01
    • Related Report
      2010 Final Research Report
  • [Presentation] Diversity among strains in Agrobacterium species2010

    • Author(s)
      S.Yamamoto, K.Tanaka, H.H.Arafat, J.Bautista-Zapanta, H.Urbanczyk, K.Suzuki
    • Organizer
      ISBDS2010 International Symposium of Biodiversity Sciences "Genome, Evolution and Environment"
    • Place of Presentation
      ルブラ王山(名古屋市)
    • Year and Date
      2010-08-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] TiプラスミドpTiC58上に見出された新しいタイプのトキシン-アンチトキシンシステムietASの研究2010

    • Author(s)
      山本真司、清川一矢、田中克幸、守口和基、鈴木克周
    • Organizer
      農芸化学会大会
    • Place of Presentation
      東京大学
    • Year and Date
      2010-03-30
    • Related Report
      2010 Final Research Report
  • [Presentation] TiプラスミドvirEとRiプラスミドGALLSの比較:出芽酵母に対する形質転換能.2009

    • Author(s)
      清川一矢, 山本真司, 佐藤由香里, 百田直人, 田中克幸, 守口和基, 鈴木克周
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-09-12
    • Related Report
      2010 Final Research Report
  • [Presentation] 大腸菌から出芽酵母への生物界間接合を利用した高効率かつ安定な新規遺伝子導入法の検討2009

    • Author(s)
      枝廣憲孝, 守口和基, 池ヶ谷洋佑, 藤原慎哉, 田中克幸, 鈴木克周
    • Organizer
      日本植物学会中国四国支部大会
    • Place of Presentation
      高知大学
    • Related Report
      2010 Final Research Report
  • [Presentation] T-DNA輸送システムによる出芽酵母の形質転換に関与する遺伝子の網羅的スクリーニング法の確立2009

    • Author(s)
      佐藤由香里, 清川一矢, 山本真司, 百田直人, 高松詩穂理, 田中克幸, 守口和基, 鈴木克周
    • Organizer
      日本植物学会中国四国支部大会
    • Place of Presentation
      高知大学
    • Related Report
      2010 Final Research Report
  • [Presentation] TiプラスミドvirEとRiプラスミドGALLSの比較:出芽酵母に対する形質転換能2009

    • Author(s)
      清川一矢, 山本真司, 佐藤由香里, 百田直人, 田中克幸, 守口和基, 鈴木克周
    • Organizer
      日本植物学会中国四国支部大会
    • Place of Presentation
      高知大学
    • Related Report
      2010 Final Research Report
  • [Presentation] TiプラスミドvirEとRiプラスミドGALLSの比較 : 出芽酵母に対する形質転換能2009

    • Author(s)
      清川一矢, 山本真司, 佐藤由香里, 百田直人, 田中克幸, 守口和基, 鈴木克周
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] IV型分泌系を応用した新規遺伝子導入法の確立2009

    • Author(s)
      守口和基, 枝廣憲孝, 池ヶ谷洋佑, 白木英介, 田中克幸, 倉田のり, 鈴木克周
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 大腸菌から出芽酵母への生物界間接合を利用した高効率かつ安定な新規遺伝子導入法の検討2009

    • Author(s)
      枝廣憲孝, 守口和基, 池ヶ谷洋佑, 藤原慎哉, 田中克幸, 鈴木克周
    • Organizer
      日本植物学会中国四国支部会第66回大会
    • Place of Presentation
      高知大学 朝倉キャンパス(高知市)
    • Related Report
      2009 Annual Research Report
  • [Presentation] T-DNA輸送システムによる出芽酵母の形質転換に関与する遺伝子の網羅的スクリーニング法の確立2009

    • Author(s)
      佐藤由香里, 清川一矢, 山本真司, 百田直人, 高松詩穂理, 田中克幸, 守口和基, 鈴木克周
    • Organizer
      日本植物学会中国四国支部会第66回大会
    • Place of Presentation
      高知大学 朝倉キャンパス(高知市)
    • Related Report
      2009 Annual Research Report
  • [Presentation] Tiプラスミド virE とRiプラスミド virE/GALLSの比較:出芽酵母に対する形質転換能2009

    • Author(s)
      清川一矢, 山本真司, 佐藤由香里, 百田直人, 田中克幸, 守口和基, 鈴木克周
    • Organizer
      日本植物学会中国四国支部会第66回大会
    • Place of Presentation
      高知大学 朝倉キャンパス(高知市)
    • Related Report
      2009 Annual Research Report
  • [Presentation] vir 遺伝子を構成的に発現するアグロバクテリア株の発見2009

    • Author(s)
      田中克幸, 清川一矢, 山本真司, 守日和基, 澤田宏之, 鈴木克周
    • Organizer
      日本植物学会中国四国支部会第66回大会
    • Place of Presentation
      高知大学 朝倉キャンパス(高知市)
    • Related Report
      2009 Annual Research Report
  • [Presentation] 生物界間接合-その分子メカニズムの解析と遺伝子導入系としての応用(II)2008

    • Author(s)
      藤原慎哉, 池ヶ谷洋佑, 影居聡子, 守口和基, 田中克幸, 鈴木克周
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2010 Final Research Report
  • [Presentation] 植物病原菌Agrobacteriumbiovar 2(Rhizobium rhizogenes)の染色体バックグランドの違いによる植物形質転換能の比較.2008

    • Author(s)
      田中克幸, 清川一矢, 山本桃子, 寺田良介, 山本真司, 守口和基, 澤田宏之, 鈴木克周
    • Organizer
      第31回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2010 Final Research Report
  • [Presentation] Noveltoxin-antitoxin genes on pTiC58 determine thestability and high incompatibility of theplasmid2008

    • Author(s)
      S. Yamamoto, K Kiyokawa, K Tanaka, KMoriguchi, K Suzuki
    • Organizer
      Annual Crown Gall Conference
    • Place of Presentation
      University of Michigan, USA
    • Related Report
      2010 Final Research Report
  • [Presentation] Construction of disarmed Ti plasmidstrasferable between Escherichia coli andAgrobacterium2008

    • Author(s)
      K Kiyokawa, S Yamamoto, K Tanaka, KMoriguchi, K Suzuki
    • Organizer
      Annual Crown Gall Conference
    • Place of Presentation
      University of Michigan, USA
    • Related Report
      2010 Final Research Report
  • [Presentation] Agrobacterium rhizogenes(biovar 2)の染色体側バックグランドに基づいた植物形質転換能の比較2008

    • Author(s)
      山本桃子, 田中克幸, 清川一矢, 山本真司, 守口和基, 澤田宏之, 鈴木克周
    • Organizer
      第65回日本植物学会中国四国支部大会
    • Place of Presentation
      広島大学
    • Related Report
      2010 Final Research Report
  • [Presentation] pTiC58の不和合性・安定性増大遺伝子.2008

    • Author(s)
      山本真司, 田中克幸, 守口和基, 鈴木克周
    • Organizer
      第65回日本植物学会中国四国支部大会
    • Place of Presentation
      広島大学
    • Related Report
      2010 Final Research Report
  • [Presentation] 生物界間接合-その分子メカニズムの解析と遺伝子導入系としての応用(II)2008

    • Author(s)
      藤原慎哉, 池ヶ谷洋佑, 影居聡子, 守口和基, 田中克幸, 鈴木克周
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2008 Annual Research Report
  • [Book] Tiand Ri plasmids. In : Microbial Megaplasmids. E. Schwartz(ed.) in Microbiology Monographseries.2009

    • Author(s)
      K. Suzuki, K. Tanaka, S. Yamamoto, K. Kiyokawa, K. Moriguchi, K. Yoshida
    • Publisher
      Springer Verlag, Heidelberg
    • Related Report
      2010 Final Research Report
  • [Book] Ti and Ri plasmids. In : Microbial Megaplasmids. E. Schwartz (ed. ) in Microbiology Monograph series2009

    • Author(s)
      K. Suzuki, K. Tanaka, S. Yamamoto, K. Kiyokawa, K. Moriguchi, K. Yoshida
    • Total Pages
      15
    • Publisher
      springer Verlag, Heidelberg
    • Related Report
      2008 Annual Research Report
  • [Patent(Industrial Property Rights)] :プラスミド除去用組み換えプラスミドおよびその利用2011

    • Inventor(s)
      山本真司、鈴木克周
    • Industrial Property Rights Holder
      国立大学法人広島大学
    • Filing Date
      2011-07-13
    • Related Report
      2010 Final Research Report
  • [Patent(Industrial Property Rights)] プラスミド除去用組み換えプラスミドおよびその利用2011

    • Inventor(s)
      山本真司、鈴木克周
    • Industrial Property Rights Holder
      広島大学
    • Filing Date
      2011-07-13
    • Related Report
      2010 Annual Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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