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Molecular evolution of microRNA gene families

Research Project

Project/Area Number 20570222
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Evolutionary biology
Research InstitutionKagawa University

Principal Investigator

IWAMA Hisakazu  Kagawa University, 総合生命科学研究センター, 准教授 (20398035)

Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2010: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2009: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2008: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
KeywordsマイクロRNA / 遺伝子族 / ターゲット配列 / 遺伝子制御網 / オルソログ / 冗長性 / 協調的遺伝子制御 / フィードフォワード回路 / UTR / フィードフォーワード / マイクロRNAプレカーサー / シミュレーション / ゲノム
Research Abstract

MicroRNA (miRNA) gene families are shown to have evolved to alter their network configurations so that they increase the network redundancy and, in contrast, reduce their target gene repertoire. These findings suggest that a large part of the redundancy-adding role of miRNA gene families is attributable to non-adaptive processes of avoiding conflicts with the established transcription factor regulatory networks. This further indicates that the high redundancy in the miRNA regulatory networks is not necessarily a hallmark of adaptive roles such as robustness, failsafe or fine-tuning.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (20 results)

All 2011 2010 2009 2008 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (10 results) Remarks (5 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] MicroRNA networks alter to conform to transcription factor networks adding redundancy and reducing the repertoire of target genes for coordinated regulation.2011

    • Author(s)
      Iwama H, Murao K, Imachi H, Ishida T
    • Journal Title

      Molecular Biology and Evolution. Vol28(1)

      Pages: 639-646

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Transcriptional double-autorepression feedforward circuits act for multicellularity and nervous system development.2011

    • Author(s)
      Iwama H, Murao K, Imachi H, Ishida T
    • Journal Title

      BMC Genomics. 12(1)

      Pages: 228-228

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] MicroRNA Networks Alter to Conform to Transcription Factor Networks Adding Redundancy and Reducing the Repertoire of Target Genes for Coordinated Regulation.2011

    • Author(s)
      Hisakazu Iwama
    • Journal Title

      Molecular Biology and Evolution

      Volume: Vol 28 Pages: 639-648

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transcriptional double-autorepression feedforward circuits act for multicellularity and nervous system development2011

    • Author(s)
      Hisakazu Iwama
    • Journal Title

      BMC Genomics

      Volume: (掲載確定)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] マイクロRNA遺伝子族による遺伝子制御網の変化の特性2010

    • Author(s)
      岩間久和, 他
    • Organizer
      日本遺伝学会第82回大会(口演、査読有)
    • Place of Presentation
      北海道
    • Year and Date
      2010-09-20
    • Related Report
      2010 Final Research Report
  • [Presentation] マイクロRNA遺伝子族による遺伝子制御網の変化の特性2010

    • Author(s)
      岩間久和
    • Organizer
      日本遺伝学会・第82回大会
    • Place of Presentation
      北海道大学・高等昨日開発総合センター(北海道)
    • Year and Date
      2010-09-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] マイクロRNA遺伝子族による遺伝子制御網構成の特質2010

    • Author(s)
      岩間久和, 他
    • Organizer
      日本進化学会第12回大会(口演、査読有)
    • Place of Presentation
      東京
    • Year and Date
      2010-08-04
    • Related Report
      2010 Final Research Report
  • [Presentation] マイクロRNA遺伝子族による遺伝子制御網構成の特質2010

    • Author(s)
      岩間久和
    • Organizer
      日本進化学会・第12回大会
    • Place of Presentation
      東京工業大学・大岡山キャンパス(東京)
    • Year and Date
      2010-08-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] マイクロRNA及び転写因子により構成される自己制御組み込み型フィードフォワード回路のヒトゲノムにおけるin silico解析2009

    • Author(s)
      岩間久和, 他
    • Organizer
      日本人類遺伝学会第54回大会(口演、査読有)
    • Place of Presentation
      東京
    • Year and Date
      2009-09-26
    • Related Report
      2010 Final Research Report
  • [Presentation] マイクロRNA及び転写因子により構成される自己制御組み込み型フィードフォワード回路のヒトゲノムにおける in silico 解析2009

    • Author(s)
      岩間久和
    • Organizer
      日本人類遺伝学会 第54回大会
    • Place of Presentation
      東京・グランドプリンスホテル高輪
    • Year and Date
      2009-09-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] マイクロRNAと転写因子の遺伝子制御ネットワークにおける役割の差異に関する比較ゲノム解析2009

    • Author(s)
      岩間久和, 他
    • Organizer
      第81回日本遺伝学会大会(口演、査読有)
    • Place of Presentation
      長野
    • Year and Date
      2009-09-17
    • Related Report
      2010 Final Research Report
  • [Presentation] マイクロRNAと転写因子の遺伝子制御ネットワークにおける役割の差異に関する比較ゲノム解析2009

    • Author(s)
      岩間久和
    • Organizer
      第81回日本遺伝学会大会
    • Place of Presentation
      松本・信州大学理学部
    • Year and Date
      2009-09-17
    • Related Report
      2009 Annual Research Report
  • [Presentation] マイクロRNAと転写因子による協調的制御のヒトゲノムにおける網羅的in silico解析2008

    • Author(s)
      岩間久和, 他
    • Organizer
      日本人類遺伝学会第53回大会(口演、査読有)
    • Place of Presentation
      神奈川
    • Year and Date
      2008-09-28
    • Related Report
      2010 Final Research Report
  • [Presentation] マイクロRNAと転写因子による協調的制御のヒトゲノムにおける網羅的 in silico 解析2008

    • Author(s)
      岩間久和
    • Organizer
      日本人類遺伝学会
    • Place of Presentation
      横浜
    • Year and Date
      2008-09-28
    • Related Report
      2008 Annual Research Report
  • [Remarks] ホームページ等

    • Related Report
      2010 Final Research Report
  • [Remarks] 開発したプログラムの公開

    • URL

      http://genet.med.kagawa-u.ac.jp/

    • Related Report
      2010 Final Research Report
  • [Remarks] 開発データの公開

    • URL

      http://genet.med.kagawa-u.ac.jp/pub/HMO_5169/List.htm

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://genet.med.kagawa-u.ac.jp/

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://genet.med.kagawa-u.ac.jp/pub/HMO_5169/List.htm

    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] ReAlignerVR(プログラム)2010

    • Inventor(s)
      Hisakazu Iwama
    • Industrial Property Rights Holder
      Hisakazu Iwama
    • Acquisition Date
      2010-06-20
    • Related Report
      2010 Final Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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