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Developing the computing procedures and systems for genetic evaluation of resource animals using the chromosome segment model

Research Project

Project/Area Number 20580303
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied animal science
Research InstitutionKyoto University

Principal Investigator

IWAISAKI Hiroaki  Kyoto University, 大学院・農学研究科, 教授 (00109042)

Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2010: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2009: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2008: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsゲノム情報科学 / 遺伝子効果 / 量的形質遺伝子座 / SNP / 予測法 / ゲノム評価 / ベイズ法 / カーネル多変量解析法 / アルゴリズム / 応用動物 / 染色体セグメント
Research Abstract

In this study, a computing procedure and system for genetic evaluation of resource animals using the chromosome segment model was considered. Those for the genetic evaluation using a large amount of SNP data were also investigated considering several approaches. Using simulated and actual data of hetero-stock mice and cattle, validities of those computing procedures were examined. Based on the theory and simulation study, the genetic evaluation of resource animals using the chromosome segment model was shown to be useful. Bayesian methods fitting SNP effects appeared to be relatively accurate and promising, in terms of estimation of total genetic merit, compared with the mixed model method using the polygene model.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (8 results)

All 2011 2010 2009

All Journal Article (2 results) Presentation (6 results)

  • [Journal Article] Genomic selection : some relevant topics2011

    • Author(s)
      H.Iwaisaki, et al.
    • Journal Title

      Japanese Journal of Animal Breeding Research

      Volume: 48 Pages: 1-33

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Genomic selection some relevant topics Japanese Journal of Animal Breeding Research Vol.18 2010 17-49 無2010

    • Author(s)
      H.Iwaisaki, A.Arakawa, H.Matsuda
    • Journal Title

      Japanese Journal of Animal Breeding Research Vol.18

      Pages: 17-49

    • Related Report
      2010 Final Research Report
  • [Presentation] Estimation of variance components for carcass traits in Japanese Black cattle using50K SNP genotype data2010

    • Author(s)
      T.Watanabe, A.Arakawa, S.Nishimura, T.Yamada, Y.Sugimoto, H.Iwaisaki.
    • Organizer
      32^<nd> Conference for the International SocietyforAnimalGenetics(p2025)
    • Place of Presentation
      Edinburgh, UK
    • Year and Date
      2010-07-28
    • Related Report
      2010 Final Research Report
  • [Presentation] Estimationofvariance components for carcass traits in Japanese Black cattle using 50K SNP genotype data2010

    • Author(s)
      T.Watanabe, A.Arakawa, H.Iwaisaki, et al.
    • Organizer
      32^<nd> Conference for the International Society for Animal Genetics
    • Place of Presentation
      Edinburgh, UK
    • Year and Date
      2010-07-28
    • Related Report
      2010 Annual Research Report
  • [Presentation] ゲノミック選抜における選択的タイピングの有効性の検討2010

    • Author(s)
      板東大三郎、荒川愛作、谷口幸雄、山田宜永、祝前博明
    • Organizer
      日本畜産学会第112回大会(p.55)
    • Place of Presentation
      明治大学駿河台キャンパス
    • Year and Date
      2010-03-29
    • Related Report
      2010 Final Research Report
  • [Presentation] 50K SNPデータを利用した黒毛和種枝肉重量の分散の推定2010

    • Author(s)
      渡邊敏夫、荒川愛作、西村翔太、山田宜永、杉本喜憲、祝前博明
    • Organizer
      日本畜産学会第112回大会(p.57)
    • Place of Presentation
      明治大学駿河台キャンパス
    • Year and Date
      2010-03-29
    • Related Report
      2010 Final Research Report
  • [Presentation] マウスのデータを用いたゲノミック評価法-MIXTURE-の評価2010

    • Author(s)
      荒川愛作、板東大三郎、谷口幸雄、山田宜永、祝前博明
    • Organizer
      日本畜産学会第112回大会(p.64)
    • Place of Presentation
      明治大学駿河台キャンパス
    • Year and Date
      2010-03-29
    • Related Report
      2010 Final Research Report
  • [Presentation] 10年後の動物遺伝育種事情はどう変わるか:とくに遺伝的評価とゲノム選抜の観点から2009

    • Author(s)
      祝前博明
    • Organizer
      動物遺伝育種学会
    • Place of Presentation
      群馬会館
    • Year and Date
      2009-11-09
    • Related Report
      2009 Annual Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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