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Analyses of DNA methylation and histone methylation changes in human malignancies

Research Project

Project/Area Number 20590325
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Pathological medical chemistry
Research InstitutionAichi Cancer Center Research Institute

Principal Investigator

KONDO Yutaka  Aichi Cancer Center Research Institute, 分子腫瘍学部, 室長 (00419897)

Research Collaborator 安 炳九  愛知県がんセンター(研究所), 分子腫瘍学部, リサーチレジデント
新城 恵子  愛知県がんセンター(研究所), 分子腫瘍学部, 連携大学院生
Project Period (FY) 2008 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2009: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2008: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords分子腫瘍学 / エピジェネティクス / 遺伝子制御機構 / ヒストンメチル化 / DNAメチル化 / 発がん / がん抑制遺伝子 / ヒストン修飾 / マイクロアレイ / 悪性胸膜中皮腫
Research Abstract

In the current study, to clarify the contribution of epigenetic abnormalities to the human tumorigenesis, we conducted high-throughput analysis of DNA methylation, lysine 27 trimethylation and genetic alterations in human malignancies. Using malignant mesothelioma as a model, we demonstrated a characteristic epigenetic profile of human mesothelioma and uncover multiple distinct epigenetic abnormalities that lead to the silencing of tumor-suppressor genes in mesothelioma and could serve as diagnostic or prognostic targets.

Report

(3 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • Research Products

    (43 results)

All 2010 2009 2008 Other

All Journal Article (17 results) (of which Peer Reviewed: 17 results) Presentation (17 results) Book (6 results) Remarks (1 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] DNA methylation predicts survival and response to therapy in patients with myelodysplastic syndromes.2010

    • Author(s)
      Shen L, Kantarjian H, Kondo Y, (他13名、11番目).
    • Journal Title

      J Clin Oncol. Vol.28,No.4

      Pages: 605-13

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Epigenetic profiles distinguish malignant pleural mesothelioma from lung adenocarcinoma.2009

    • Author(s)
      Goto Y, Shinjo K, Kondo Y, (他19名、3番目、責任著者)
    • Journal Title

      Cancer Res. Vol.69,No.23

      Pages: 9073-82

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article]2009

    • Author(s)
      Ohno M, Natsume A, Kondo Y, (他6名、3番目)
    • Journal Title

      Mol Cancer Res. Vol.7,No.12

      Pages: 2022-30

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Induction of oligodendrogenesis in glioblastoma-initiating cells by IFN-mediated activation of STAT3 signaling.2009

    • Author(s)
      Yuki K, Natsume A, Yokoyama H, Kondo Y, (他6名、4番目), Ohno M, Kato T, Chansakul P, Ito M, Kim S, Wakabayashi T.
    • Journal Title

      Cancer Lett. Vol.284,No.1

      Pages: 71-9

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Induction of oligodendrogenesis in glioblastoma-initiating cells by IFN-m ediated activation of STAT3 signaling2009

    • Author(s)
      Kanako Yuki
    • Journal Title

      Cancer Letter 284

      Pages: 71-79

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Combinational inhibition of MET and EGFR suppresses proliferation of malignant mesothelioma cells2009

    • Author(s)
      Koji Kawaguchi
    • Journal Title

      Carcinogenesis 30

      Pages: 1097-1105

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Epigenetic profiles distinguish malignant pleural mesothelioma from lung adenocarcinoma2009

    • Author(s)
      Yasuhiro Goto
    • Journal Title

      Cancer Research 69

      Pages: 9073-9082

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The modulation of microRNAs by Type I Interferon through the activation of STAT3 in human glioma2009

    • Author(s)
      Masasuke Ohno
    • Journal Title

      Molecular Cancer Research 7

      Pages: 2022-2030

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Downregulation of Histone H3 Lysine 9 Methyltransferase G9a Induces Centrosome Disruption and Chromosome Instability in Cancer Cells2008

    • Author(s)
      Kondo Y
    • Journal Title

      PloS One 3

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gene silencing in cancer by histone H3 lysine 27 tri-methylation independent of promoter DNA methylation2008

    • Author(s)
      Kondo Y
    • Journal Title

      Nat Genet. 40

      Pages: 741-750

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The DNA demethylating agent 5-aza-2'-deoxycytidine activates NY-ESO-1 antigenicity in orthotopic human glioma2008

    • Author(s)
      Natsume A
    • Journal Title

      Int J Cancer 122

      Pages: 2542-53

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Roles of ASH1 in DKK1 and E-cadherin repression and neuroendocrine differentiation in lung cancer2008

    • Author(s)
      Osada H
    • Journal Title

      Cancer Res. 68

      Pages: 1647-55

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An Sp1/Sp3 binding polymorphism confers methylation protection2008

    • Author(s)
      Boumber YA
    • Journal Title

      PLoS Genet. 4

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Variable DNA methylation patterns associated with progression of disease in hep atocellular carcinomas2008

    • Author(s)
      Gao W
    • Journal Title

      Carcinogenesis 29

      Pages: 2139-46

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synergistic induction of NY-ESO-1 antigen expression by a novel histone deacetyl ase inhibitor, valproic acid with 5-aza-2'-deoxycytidine, in glioma cells2008

    • Author(s)
      Oi S
    • Journal Title

      J Neurooncol 109

      Pages: 117-22

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A characteristic methylation profile in CpG island methylator phenotype-negative distal colorectal cancers.

    • Author(s)
      An B, Kondo Y, (他18名、2番目、責任著者)
    • Journal Title

      Int J Cancer (in press)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A characteristic methylation profile in CpG island methylator phenotype-negative distal colorectal cancers

    • Author(s)
      Byonggu An
    • Journal Title

      International Journal of Cancer (印刷中)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] がん細胞の可塑性を標的とした新規エピジェネティクス治療法の開発2010

    • Author(s)
      近藤豊
    • Organizer
      平成21年度文部科学省科学研究費補助金がん研究に係わる特定領域研究がん特定研究5領域合同シンポジウム
    • Place of Presentation
      東京(学術総合センター、一橋記念講堂)
    • Year and Date
      2010-02-03
    • Related Report
      2009 Annual Research Report
  • [Presentation] 「消化器癌におけるエピジェネティクス」がん細胞を制御するDNAメチル化とヒストン修飾の網羅的解析.2009

    • Author(s)
      近藤豊
    • Organizer
      第17回日本消化器関連学会
    • Place of Presentation
      基調講演、京都
    • Year and Date
      2009-10-15
    • Related Report
      2009 Final Research Report
  • [Presentation] がん細胞を制御するDNAメチル化とヒストン修飾の網羅的解析2009

    • Author(s)
      近藤豊
    • Organizer
      第17回日本消化器関連学会
    • Place of Presentation
      京都(京都国際会議場)
    • Year and Date
      2009-10-14
    • Related Report
      2009 Annual Research Report
  • [Presentation] 「Microarray-based approaches to cancer epigenetics」ChiP-chip法をはじめとした網羅的エピジェネティクス解析法のがん研究への応用2009

    • Author(s)
      近藤豊
    • Organizer
      第68回日本癌学会学術総会
    • Place of Presentation
      モーニングレクチャー、横浜
    • Year and Date
      2009-10-03
    • Related Report
      2009 Final Research Report
  • [Presentation] Chip-chip法をはじめとした網羅的エピジェネティクス解析法のがん研究への応用2009

    • Author(s)
      近藤豊
    • Organizer
      第68回日本癌学会学術総会
    • Place of Presentation
      横浜(パシフィコ横浜)
    • Year and Date
      2009-10-03
    • Related Report
      2009 Annual Research Report
  • [Presentation] 「Epigenetics in Development and Disease Conference」Role of histone H3 lysine 27 tri-methylation in human brain tumor-propagating cells.2009

    • Author(s)
      Kondo Y
    • Organizer
      The 4th Asian Epigenomics Meeting.
    • Place of Presentation
      Symposium. Singapore
    • Year and Date
      2009-08-25
    • Related Report
      2009 Final Research Report
  • [Presentation] Role of histone H3 lysine 27 tri-methylation in human brain tumor propagating cells2009

    • Author(s)
      Yutaka Kondo
    • Organizer
      The 4th Asian Epigenomics Meeting
    • Place of Presentation
      Singapore
    • Year and Date
      2009-08-24
    • Related Report
      2009 Annual Research Report
  • [Presentation] 「DNA Methylation & Chromatin Remodeling in Cancer」Role of DNA methylation and histone modifications in human neoplasia.2009

    • Author(s)
      Kondo Y
    • Organizer
      The 18th CRI Cancer Symposium.
    • Place of Presentation
      Symposium. Seoul, Korea
    • Year and Date
      2009-06-05
    • Related Report
      2009 Final Research Report
  • [Presentation] Role of DNA methylation and histone modifications in human neoplasia2009

    • Author(s)
      Yutaka Kondo
    • Organizer
      The 18th CRI Cancer Symposium
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2009-06-05
    • Related Report
      2009 Annual Research Report
  • [Presentation] Comprehensive methylation analysis reveals characteristic methylation profiling of CpG island methylator phenotype-negative colorectal cancers in distal colon2009

    • Author(s)
      Yutaka Kondo
    • Organizer
      100th American Association for Cancer Research Annual Meeting
    • Place of Presentation
      Denver, USA
    • Year and Date
      2009-04-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] 「At the Front of Epigenetic Research」Cross-talk of DNA methylation and histone methylation in human cancers.2009

    • Author(s)
      Kondo Y
    • Organizer
      Avison Biomedical Symposium.
    • Place of Presentation
      Symposium. Seoul, Korea
    • Year and Date
      2009-01-17
    • Related Report
      2009 Final Research Report
  • [Presentation] Cross-talk of DNA methylation and histone methylation in human cancers2009

    • Author(s)
      Kondo Y
    • Organizer
      Avison Biomedical Symposium 2009 "At the Front of Epigenetic Research"
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2009-01-17
    • Related Report
      2008 Annual Research Report
  • [Presentation] 「Cancer Epigenetics」Role of histone methylation in human cancers.2008

    • Author(s)
      Kondo Y
    • Organizer
      Northeastern Asian Symposium on Cancer Epigenetics.
    • Place of Presentation
      Symposium. Jeju, Korea
    • Year and Date
      2008-11-05
    • Related Report
      2009 Final Research Report
  • [Presentation] Role of histone methylation in human cancers2008

    • Author(s)
      Kondo Y
    • Organizer
      Northeastern Asian Symposium on "Cancer Epigenetics"
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      2008-11-05
    • Related Report
      2008 Annual Research Report
  • [Presentation] プロモーターアレイを用いたヒト腫瘍におけるDNAメチル化解析 (Array-based approach for identification of DNA methylation targets in human cancers)2008

    • Author(s)
      近藤豊
    • Organizer
      第67回日本癌学会学術総会
    • Place of Presentation
      名古屋
    • Year and Date
      2008-10-29
    • Related Report
      2008 Annual Research Report
  • [Presentation] Role of histone H3 lysine 27 tri-methylation in human cancers2008

    • Author(s)
      Kondo Y
    • Organizer
      The 2nd Shanghai Symposium of Epigenetics in Development and Diseases and The 3rd Annual Meeting of Asian Epigenome Alliance
    • Place of Presentation
      Shanghai, China
    • Year and Date
      2008-07-05
    • Related Report
      2008 Annual Research Report
  • [Presentation] Gene Silencing in Cancer by Histone H3 Lysine 27 Tri-methylation Independent of Promoter DNA Methylation2008

    • Author(s)
      Kondo Y
    • Organizer
      AACR special conference in Cancer Research, Cancer Epigenetics
    • Place of Presentation
      Boston, USA
    • Year and Date
      2008-05-31
    • Related Report
      2008 Annual Research Report
  • [Book] Inflammation-related aberrant patterns of DNA methylation: detection and role in epigenetic deregulation of cancer cell transcriptome2009

    • Author(s)
      Suzuki H, Toyota M, Kondo Y, Shinomura Y. Humana Press
    • Publisher
      Methods in Molecular Medicine
    • Related Report
      2009 Final Research Report
  • [Book] Chromatin Remodeling(Encyclopedia in Cancer)2009

    • Author(s)
      Kondo Y.
    • Total Pages
      4
    • Publisher
      Springer
    • Related Report
      2009 Final Research Report
  • [Book] G.I.Research「消化器がんにおけるヒストン修飾」2009

    • Author(s)
      岡本泰幸
    • Total Pages
      7
    • Publisher
      先端医学社
    • Related Report
      2009 Annual Research Report
  • [Book] Yonsei Medical Journal 「Epigenetic cross-talk between DNA methylation anc histone modifications in human cancers」2009

    • Author(s)
      Yutaka Kondo
    • Total Pages
      9
    • Publisher
      Yonsei University College of Medicine
    • Related Report
      2009 Annual Research Report
  • [Book] Encyclopedia in Cancer 「Chromatin Remodeling」2009

    • Author(s)
      Yutaka Kondo
    • Total Pages
      4
    • Publisher
      Springer
    • Related Report
      2009 Annual Research Report
  • [Book] エピジェネティクス実験プロトコール「Pyrosequencing (パイロシークエンス法)」2008

    • Author(s)
      近藤豊
    • Total Pages
      15
    • Publisher
      羊土社
    • Related Report
      2008 Annual Research Report
  • [Remarks] ホームページ等

    • URL

      http://www.pref.aichi.jp/cancer-center/400/420/421/421-03.html#02

    • Related Report
      2009 Final Research Report
  • [Patent(Industrial Property Rights)] 悪性中皮腫の検出のための方法及びキット2009

    • Inventor(s)
      近藤豊、関戸好孝
    • Industrial Property Rights Holder
      近藤豊、関戸好孝
    • Filing Date
      2009-06-05
    • Acquisition Date
      2009-06-05
    • Related Report
      2009 Final Research Report
  • [Patent(Industrial Property Rights)] 悪性中皮腫の検出のための方法及びキット2009

    • Inventor(s)
      近藤豊
    • Industrial Property Rights Holder
      愛知県がんセンター
    • Industrial Property Number
      2009-136624
    • Filing Date
      2009-06-05
    • Related Report
      2009 Annual Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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