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Detection of frequent genomic deletions in malignant mesothelioma cells

Research Project

Project/Area Number 20590590
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Laboratory medicine
Research InstitutionHyogo Medical University

Principal Investigator

TAMAOKI Tomoko (HASHIMOTO Tomoko)  兵庫医科大学, 医学部, 教授 (10172868)

Co-Investigator(Kenkyū-buntansha) TSUJIMURA Toru  兵庫医科大学, 医学部, 教授 (20227408)
NAKANO Takashi  兵庫医科大学, 医学部, 教授 (10155781)
FUKUOKA Kazuya  兵庫医科大学, 医学部, 准教授 (80305721)
MORINAGA Tomonori  兵庫医科大学, 医学部, 助教 (10351818)
YOSHIKAWA Reigetsu  兵庫医科大学, 医学部, 助教 (90319864)
SAITO Yuko  兵庫医科大学, 医学部, 講師 (00254350)
YOSHIKAWA Yoshie  兵庫医科大学, 医学部, 助教 (10566673)
Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2010: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2009: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2008: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords悪性中皮腫 / 上皮型中皮腫 / ゲノム解析 / CDKN2A・2B / セマフォリン / VEGF / BAP1 / アレイCGH / 組織型特異性 / がん抑制遺伝子 / アスベスト暴露 / 遺伝子多型 / 遺伝子欠損 / p15 / アスベスト曝露
Research Abstract

Malignant mesothelioma(MM) is an asbestos-related tumor. Array-based CGH was performed using MM primary-cultured cells established in Hyogo College of Medicine(HCM). In HCM-MM cell samples, frequent deletions were detected in 1p, 3p21, 4q, 9p21, 16p13 and 22q. We also used ATCC and Riken MM cells. All 21 MM cells showed homozygous deletions in the 9p21 region carrying the CDKN2A/p16 and CDKN2B/p15 genes. Homozygous or heterozygous deletions in the 22q region carrying the NF2 gene were detected in 80% of HCC-MM cells, and deletions in 3p21.1-21.31 in 50%. We focused on the 3p21 region because it was specific to the epithelioid type. Since 3p21.1 and 3p21.31 regions contain Semaphorin family genes that inhibit VEGF activity, we analyzed gene expression profiles and found that lower expression of several SEMA genes and higher expression of VEGFA in epithelioid MMs than in Met5a, a normal mesothelial cell line, suggesting that VEGFA biological activity may be higher in epithelioid MMs. Genome alterations of BAP1, located in 3p21.1, was detected in 15 of 16 epithelioid MMs ; biallelic deletions or monoallelic deletions with or without mutations. Immunostaining with anti-BAP1 antibody showed negative nuclear staining in most of epithelioid MMs. These BAP1 mutations and deletions were somatic, since no germinal mutations were detected. These results showed that BAP1 mutation plays a significant role in the pathogenesis of epithelioid MMs.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (5 results)

All 2012 2011 2010 2008

All Journal Article (2 results) Presentation (3 results)

  • [Journal Article] Frequent inactivation of BAP1 gene in epithelioid-type malignant mesothelioma2012

    • Author(s)
      Yoshikawa Y, Sato A, Tsujimura T, Emi M, Morinaga T, Fukuoka K, Yamada S, Murakami A, Kondo N, Matsumoto S, Okumura Y, Tanaka F, Hasegawa S, Nakano T, Hashimoto-Tamaoki T.
    • Journal Title

      Cancer Sci

    • Related Report
      2010 Final Research Report
  • [Journal Article] Frequent deltion of 3p21.1 region carrying semaphorin 3G and aberrant expression of the genes participating in semaphorin signaling in the epithelioid type of malignant mesothelioma cells2011

    • Author(s)
      Yoshikawa Y, Sato A, Tsujimura T, Morinaga T, Fukuoka K, Yamada S, Murakami A, Kondo N, Matsumoto S, Okumura Y, Tanaka F, Hasegawa S, Hashimoto-Tamaoki T, Nakano T.
    • Journal Title

      Int J Oncol

      Volume: 39(6) Pages: 1365-74

    • Related Report
      2010 Final Research Report
  • [Presentation] 悪性中皮腫におけるBAP1(BRCA1 associated protein 1)遺伝子の高頻度欠失2010

    • Author(s)
      吉川良恵, 森永伴法, 佐藤鮎子, 福岡和也, 辻村亨, 玉置(橋本)知子, 中野孝司
    • Organizer
      第69回日本癌学会学術総会(JCA2010)
    • Place of Presentation
      大阪
    • Year and Date
      2010-09-24
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] Frequent deletions in 3p21.1region in malignant mesothelioma cell lines established from Japanese patients(IMIG2010)2010

    • Author(s)
      Yoshikawa Y, Nakano Y, Sato A, Fukuoka K, Murakami A, Yamada S, Morinaga T, Tsujimura T, Hashimoto-Tamaoki T.
    • Place of Presentation
      Kyoto
    • Related Report
      2010 Final Research Report
  • [Presentation] 悪性中皮腫より樹立細胞株のアレイCGH解析2008

    • Author(s)
      吉川良恵
    • Organizer
      第67回日本癌学会学術総会
    • Place of Presentation
      名古屋
    • Related Report
      2008 Annual Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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