Development of a web resource for elucidating glycan function
Project/Area Number |
20680017
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Research Category |
Grant-in-Aid for Young Scientists (A)
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Allocation Type | Single-year Grants |
Research Field |
Bioinformatics/Life informatics
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Research Institution | Soka University |
Principal Investigator |
KINOSHITA Kiyoko 創価大学, 工学部生命情報工学科, 準教授 (50440235)
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Project Period (FY) |
2008 – 2010
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Project Status |
Completed (Fiscal Year 2010)
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Budget Amount *help |
¥25,610,000 (Direct Cost: ¥19,700,000、Indirect Cost: ¥5,910,000)
Fiscal Year 2010: ¥7,540,000 (Direct Cost: ¥5,800,000、Indirect Cost: ¥1,740,000)
Fiscal Year 2009: ¥7,540,000 (Direct Cost: ¥5,800,000、Indirect Cost: ¥1,740,000)
Fiscal Year 2008: ¥10,530,000 (Direct Cost: ¥8,100,000、Indirect Cost: ¥2,430,000)
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Keywords | バイオインフォマティクス / 糖鎖インフォマティクス / ウェブリソース / 機械学習 / 糖鎖 / 糖鎖関連データベース / 解析システム |
Research Abstract |
This project focused on the development of a web resource to analyze glycans using algorithmic and machine learning tools which glycobiologists could access and utilize easily. During the time of this project, we developed (a) DrawRINGS, a glycan structure drawing and search tool, (b) Glycan Miner, a tool to extract glycan features using machine learning, (c) Glycan Pathway Predictor, a tool to predict N-glycan biosynthesis pathways, (d) Kernel Tool, a tool for classifying different data sets of glycan structures, and (e) Profile PSTMM, a tool of a probabilistic model to extract glycan profiles.
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Report
(4 results)
Research Products
(30 results)
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[Journal Article] The RINGS resource for glycome informatics analysis and data mining on the Web2010
Author(s)
Akune, Y., Hosoda, M., Kaiya, S., Shinmachi, D., Aoki-Kinoshita, K.F.
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Journal Title
OMICS
Volume: Vol. 14, No. 4
Pages: 2010-2010
URL
Related Report
Peer Reviewed
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