Fast and Flexible Searching Methods for Protein 3-D Structure Databases and Their Applications
| Project/Area Number |
20700264
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| Research Category |
Grant-in-Aid for Young Scientists (B)
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| Allocation Type | Single-year Grants |
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| Research Field |
Bioinformatics/Life informatics
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| Research Institution | The University of Tokyo |
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Principal Investigator |
SHIBUYA Tetsuo The University of Tokyo, 医科学研究所, 准教授 (60396893)
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| Project Period (FY) |
2008 – 2010
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| Project Status |
Completed (Fiscal Year 2010)
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| Budget Amount *help |
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2010: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2009: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2008: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
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| Keywords | アルゴリズム / 検索技術 / データベース / 生物情報 / タンパク質 / 3次元立体構造 |
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| Research Abstract |
We explored research on similarity search algorithms for protein 3-D structure databases, and succeeded in developing various algorithms which must benefit the future structural biology a lot and are highly praised in the international research community. Especially we developed a very fast fundamental linear-time protein 3-D structure database searching algorithm, which is practically and theoretically much faster than any of previous algorithms.
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Report
(4 results)
Research Products
(20 results)
